Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g02106 Nelumbo nucifera HOM05D005701 ORTHO05D007058 2.8e-117 425.2 205 100.0
Potri.002G212400 Populus trichocarpa HOM05D005701 ORTHO05D007058 6.0e-80 301.2 170 80.0
Cfa006081 Carpinus fangiana HOM05D005701 ORTHO05D007058 1.0e-79 300.4 168 81.0
QL02p002445 Quercus lobata HOM05D005701 ORTHO05D007058 2.3e-79 299.3 164 82.3
GSVIVG01011062001 Vitis vinifera HOM05D005701 ORTHO05D007058 3.0e-79 298.9 171 80.7
Dinv11265 Davidia involucrata HOM05D005701 ORTHO05D007058 5.1e-79 298.1 175 78.3
Actinidia24310 Actinidia chinensis HOM05D005701 ORTHO05D007058 6.7e-79 297.7 170 80.0
PGR119G1915 Punica granatum HOM05D005701 ORTHO05D007058 1.9e-78 296.2 162 84.0
Ciclev10022400m.g Citrus clementina HOM05D005701 ORTHO05D007058 4.3e-78 295.0 171 79.5
Gohir.A12G006700 Gossypium hirsutum HOM05D005701 ORTHO05D007058 4.3e-78 295.0 184 77.7
CiPaw.08G102100 Carya illinoinensis HOM05D005701 ORTHO05D007058 7.4e-78 294.3 163 82.2
Aqoxy2G03192 Aquilegia oxysepala HOM05D005701 ORTHO05D007058 9.6e-78 293.9 179 78.8
Duzib138G1703 Durio zibethinus HOM05D005701 ORTHO05D007058 2.1e-77 292.7 171 80.1
TWI59G0853 Tripterygium wilfordii HOM05D005701 ORTHO05D007058 4.8e-77 291.6 164 81.7
Oeu006228.1 Olea europaea HOM05D005701 ORTHO05D007058 6.2e-77 291.2 174 75.9
PSO170G3928 Papaver somniferum HOM05D005701 ORTHO05D007058 8.1e-77 290.8 173 76.9
vmacro02538 Vaccinium macrocarpon HOM05D005701 ORTHO05D007058 8.1e-77 290.8 170 78.2
Haze_04768 Corylus avellana HOM05D005701 ORTHO05D007058 1.1e-76 290.4 190 72.6
PSO302G0130 Papaver somniferum HOM05D005701 ORTHO05D007058 1.1e-76 290.4 173 77.5
TAR365G0921 Trochodendron aralioides HOM05D005701 ORTHO05D007058 3.1e-76 288.9 147 88.4
CSS0017429 Camellia sinensis var. sinensis HOM05D005701 ORTHO05D007058 6.9e-76 287.7 170 77.6
Rhsim13G0021200 Rhododendron simsii HOM05D005701 ORTHO05D007058 9.0e-76 287.3 173 76.3
Lalb_Chr06g0163181 Lupinus albus HOM05D005701 ORTHO05D007058 1.5e-75 286.6 167 81.4
PGSC0003DMG401020044 Solanum tuberosum HOM05D005701 ORTHO05D007058 3.4e-75 285.4 179 74.9
Thecc.01G285600 Theobroma cacao HOM05D005701 ORTHO05D007058 3.4e-75 285.4 175 76.6
MD03G1271500 Malus domestica HOM05D005701 ORTHO05D007058 1.7e-74 283.1 170 76.5
HanXRQChr14g0430981 Helianthus annuus HOM05D005701 ORTHO05D007058 3.8e-74 282.0 169 76.9
Lsat_1_v5_gn_5_187740 Lactuca sativa HOM05D005701 ORTHO05D007058 3.8e-74 282.0 166 75.9
Sed0003723 Sechium edule HOM05D005701 ORTHO05D007058 3.8e-74 282.0 176 73.9
Nitab4.5_0002093g0100 Nicotiana tabacum HOM05D005701 ORTHO05D007058 4.9e-74 281.6 180 72.8
ClCG09G006770 Citrullus lanatus HOM05D005701 ORTHO05D007058 6.4e-74 281.2 180 73.9
Eucgr.H01544 Eucalyptus grandis HOM05D005701 ORTHO05D007058 6.4e-74 281.2 162 79.0
Manes.05G072000 Manihot esculenta HOM05D005701 ORTHO05D007058 6.4e-74 281.2 170 77.1
Solyc06g084390.3 Solanum lycopersicum HOM05D005701 ORTHO05D007058 1.4e-73 280.0 179 74.9
Sopen06g035780 Solanum pennellii HOM05D005701 ORTHO05D007058 1.4e-73 280.0 179 74.9
FAN15G1986 Fragaria x ananassa HOM05D005701 ORTHO05D007058 1.9e-73 279.6 170 76.5
Glyma.02G150100 Glycine max HOM05D005701 ORTHO05D007058 1.9e-73 279.6 165 77.6
MD11G1292100 Malus domestica HOM05D005701 ORTHO05D007058 1.9e-73 279.6 170 77.1
FAN20G1753 Fragaria x ananassa HOM05D005701 ORTHO05D007058 3.2e-73 278.9 170 76.5
FAN27G2557 Fragaria x ananassa HOM05D005701 ORTHO05D007058 3.2e-73 278.9 170 76.5
Prupe.8G247700 Prunus persica HOM05D005701 ORTHO05D007058 1.2e-72 276.9 170 76.5
SalBow6G2366 Salvia bowleyana HOM05D005701 ORTHO05D007058 1.2e-72 276.9 166 73.5
MSTRG.17433 Avicennia marina HOM05D005701 ORTHO05D007058 1.6e-72 276.6 174 70.7
MELO3C015871.2 Cucumis melo HOM05D005701 ORTHO05D007058 2.1e-72 276.2 176 72.7
RcHm_v2.0_Chr6g0291961 Rosa chinensis HOM05D005701 ORTHO05D007058 2.7e-72 275.8 175 75.4
Ca_10397_v3 Cicer arietinum L. HOM05D005701 ORTHO05D007058 3.5e-72 275.4 166 76.5
ECA248G0764 Erigeron canadensis HOM05D005701 ORTHO05D007058 3.5e-72 275.4 158 77.8
Migut.N02139 Erythranthe guttata HOM05D005701 ORTHO05D007058 4.6e-72 275.0 173 69.9
Migut.N02175 Erythranthe guttata HOM05D005701 ORTHO05D007058 4.6e-72 275.0 179 67.6
CANSAT25G0672 Cannabis sativa HOM05D005701 ORTHO05D007058 6.0e-72 274.6 182 72.5
FAN24G1361 Fragaria x ananassa HOM05D005701 ORTHO05D007058 6.0e-72 274.6 170 75.3
CsaV3_7G028500 Cucumis sativus L. HOM05D005701 ORTHO05D007058 7.9e-72 274.2 168 75.6
Cc01_g05150 Coffea canephora HOM05D005701 ORTHO05D007058 1.8e-71 273.1 147 83.0
Peaxi162Scf00783g00418 Petunia axillaris HOM05D005701 ORTHO05D007058 1.8e-71 273.1 160 77.5
Phvul.007G168600 Phaseolus vulgaris HOM05D005701 ORTHO05D007058 1.8e-71 273.1 174 74.1
Sc24g0004070 Simmondsia chinensis HOM05D005701 ORTHO05D007058 3.0e-71 272.3 174 74.1
Lj5g0014836 Lotus japonicus HOM05D005701 ORTHO05D007058 5.1e-71 271.6 168 75.0
Medtr1g089810 Medicago truncatula HOM05D005701 ORTHO05D007058 1.5e-70 270.0 162 74.1
TPR.G26671 Trifolium pratense HOM05D005701 ORTHO05D007058 1.5e-70 270.0 184 71.7
Nitab4.5_0010603g0020 Nicotiana tabacum HOM05D005701 ORTHO05D007058 1.9e-70 269.6 161 77.0
Psat6g169920 Pisum sativum HOM05D005701 ORTHO05D007058 1.9e-70 269.6 175 73.1
Ah.08g212880 Amaranthus hybridus HOM05D005701 ORTHO05D007058 4.3e-70 268.5 180 72.2
EL10Ac7g17192 Beta vulgaris HOM05D005701 ORTHO05D007058 9.6e-70 267.3 171 70.8
CAN.G1682.11 Capsicum annuum HOM05D005701 ORTHO05D007058 2.8e-69 265.8 147 79.6
Hund06566 Selenicereus undatus HOM05D005701 ORTHO05D007058 1.4e-68 263.5 175 72.0
Lj2A1180T63 Lonicera japonica HOM05D005701 ORTHO05D007058 6.9e-68 261.2 168 73.8
THA.LOC104801212 Tarenaya hassleriana HOM05D005701 ORTHO05D007058 6.9e-68 261.2 163 69.9
THA.LOC104826003 Tarenaya hassleriana HOM05D005701 ORTHO05D007058 9.0e-68 260.8 171 66.7
unitig_8.g3319 Utricularia gibba HOM05D005701 ORTHO05D007058 9.0e-68 260.8 172 68.6
ECA248G1579 Erigeron canadensis HOM05D005701 ORTHO05D007058 2.0e-67 259.6 179 66.5
AT4G02980 Arabidopsis thaliana HOM05D005701 ORTHO05D007058 1.7e-66 256.5 170 69.4
Migut.D00251 Erythranthe guttata HOM05D005701 ORTHO05D007058 6.5e-66 254.6 169 68.6
Hma1.2p1_0628F.1_g191820 Hydrangea macrophylla HOM05D005701 ORTHO05D007058 1.1e-65 253.8 147 78.9
Aa31LG5G2530 Aethionema arabicum HOM05D005701 ORTHO05D007058 1.9e-65 253.1 170 68.2
Manes.01G211300 Manihot esculenta HOM05D005701 ORTHO05D007058 1.9e-65 253.1 144 81.9
AL6G49950 Arabidopsis lyrata HOM05D005701 ORTHO05D007058 2.5e-65 252.7 170 68.8
A09p02300 Brassica napus HOM05D005701 ORTHO05D007058 3.2e-65 252.3 170 68.2
BraA09t35879Z Brassica rapa HOM05D005701 ORTHO05D007058 3.2e-65 252.3 170 68.2
SGA_v2.0_scaffold1G00437 Striga asiatica HOM05D005701 ORTHO05D007058 3.2e-65 252.3 184 63.6
HPP92_010620 Vanilla planifolia HOM05D005701 ORTHO05D007058 3.2e-65 252.3 170 70.6
Gorai.008G006100 Gossypium raimondii HOM05D005701 ORTHO05D007058 4.2e-65 251.9 159 78.6
Atru.chr5.1332 Acer truncatum HOM05D005701 ORTHO05D007058 1.6e-64 250.0 150 79.3
Carub.0006s3407 Capsella rubella HOM05D005701 ORTHO05D007058 2.1e-64 249.6 166 69.9
Sp6g03020 Schrenkiella parvula HOM05D005701 ORTHO05D007058 3.5e-64 248.8 170 68.2
BolC9t53172H Brassica oleracea HOM05D005701 ORTHO05D007058 6.0e-64 248.1 171 67.3
Thhalv10028980m.g Eutrema salsugineum HOM05D005701 ORTHO05D007058 1.3e-63 246.9 166 68.1
C09p02410 Brassica napus HOM05D005701 ORTHO05D007058 3.9e-63 245.4 171 66.7
CARHR251350 Cardamine hirsuta HOM05D005701 ORTHO05D007058 3.9e-63 245.4 148 74.3
CDE08G1024 Ceratophyllum demersum HOM05D005701 ORTHO05D007058 8.7e-63 244.2 173 65.3
AUR62036778 Chenopodium quinoa HOM05D005701 ORTHO05D007058 8.7e-63 244.2 220 55.9
Thecc.01G285700 Theobroma cacao HOM05D005701 ORTHO05D007058 8.7e-63 244.2 167 68.3
BolC3t16031H Brassica oleracea HOM05D005701 ORTHO05D007058 1.9e-62 243.0 175 64.0
C03p37390 Brassica napus HOM05D005701 ORTHO05D007058 2.5e-62 242.7 175 64.0
BcaC01g06714 Brassica carinata HOM05D005701 ORTHO05D007058 3.3e-62 242.3 175 64.0
BraA03t12248Z Brassica rapa HOM05D005701 ORTHO05D007058 3.3e-62 242.3 175 64.6
A03p30690 Brassica napus HOM05D005701 ORTHO05D007058 5.7e-62 241.5 175 64.0
BcaB01g02494 Brassica carinata HOM05D005701 ORTHO05D007058 9.6e-62 240.7 175 62.9
Cc01_g03720 Coffea canephora HOM05D005701 ORTHO05D007058 1.1e-60 237.3 125 84.8
Zm00001eb410800 Zea mays HOM05D005701 ORTHO05D007058 3.1e-60 235.7 145 74.5
VMungo0720G2830 Vigna mungo HOM05D005701 ORTHO05D007058 1.5e-59 233.4 150 72.7
Os12g0529400 Oryza sativa ssp. japonica HOM05D005701 ORTHO05D007058 3.4e-59 232.3 171 63.7
SGA_v2.0_scaffold172G39038 Striga asiatica HOM05D005701 ORTHO05D007058 1.1e-57 227.3 158 66.5
Zm00001eb410760 Zea mays HOM05D005701 ORTHO05D007058 1.1e-57 227.3 151 70.9
Oeu047892.2 Olea europaea HOM05D005701 ORTHO05D007058 1.6e-56 223.4 252 47.2
Zm00001eb137840 Zea mays HOM05D005701 ORTHO05D007058 1.6e-56 223.4 150 68.7
SalBow3G3506 Salvia bowleyana HOM05D005701 ORTHO05D007058 1.0e-55 220.7 153 62.7
TPR.G13316 Trifolium pratense HOM05D005701 ORTHO05D007058 8.7e-55 217.6 215 53.0
BcaB01g01993 Brassica carinata HOM05D005701 ORTHO05D007058 5.7e-54 214.9 129 75.2
MSTRG.12575 Avicennia marina HOM05D005701 ORTHO05D007058 8.2e-53 211.1 176 55.1
Cpa.g.sc9.126 Carica papaya HOM05D005701 ORTHO05D007058 4.1e-52 208.8 134 76.1
FvH4_2g24150 Fragaria vesca HOM05D005701 ORTHO05D007058 1.1e-49 200.7 127 73.2
SMO164G0245 Selaginella moellendorffii HOM05D005701 ORTHO05D007058 9.4e-49 197.6 152 61.2
Rhsim13G0021400 Rhododendron simsii HOM05D005701 ORTHO05D007058 3.9e-47 192.2 141 63.1
Pp3c4_12750 Physcomitrium patens HOM05D005701 ORTHO05D007058 6.7e-47 191.4 198 50.5
Pp3c4_12660 Physcomitrium patens HOM05D005701 ORTHO05D007058 3.3e-46 189.1 173 53.2
MBI19_g33449_MAGBIO Magnolia biondii HOM05D005701 ORTHO05D007058 9.7e-46 187.6 110 77.3
Cc00_g05320 Coffea canephora HOM05D005701 ORTHO05D007058 1.3e-45 187.2 154 57.8
MBI19_g39288_MAGBIO Magnolia biondii HOM05D005701 ORTHO05D007058 3.7e-45 185.7 104 80.8
vmacro02539 Vaccinium macrocarpon HOM05D005701 ORTHO05D007058 4.8e-45 185.3 126 69.0
Gohir.D12G006100 Gossypium hirsutum HOM05D005701 ORTHO05D007058 2.6e-43 179.5 112 78.6
CAN.G996.16 Capsicum annuum HOM05D005701 ORTHO05D007058 2.2e-42 176.4 126 64.3
ATR0626G241 Amborella trichopoda HOM05D005701 ORTHO05D007058 3.8e-42 175.6 135 63.0
QL02p081958 Quercus lobata HOM05D005701 ORTHO05D007058 1.1e-41 174.1 97 79.4
Zm00001eb440220 Zea mays HOM05D005701 ORTHO05D007058 1.1e-41 174.1 113 72.6
Zm00001eb410780 Zea mays HOM05D005701 ORTHO05D007058 2.0e-35 153.3 102 71.6
AUR62033690 Chenopodium quinoa HOM05D005701 ORTHO05D007058 3.5e-35 152.5 91 73.6
AagrBONN_evm.TU.Sc2ySwM_117.1970 Anthoceros agrestis HOM05D005701 ORTHO05D007058 1.0e-34 151.0 158 48.1
CBR_g38020 Chara braunii HOM05D005701 ORTHO05D007058 5.0e-34 148.7 116 58.6
Rhsim13G0021300 Rhododendron simsii HOM05D005701 ORTHO05D007058 1.1e-28 131.0 210 35.7
Ah.04g164000 Amaranthus hybridus HOM05D005701 ORTHO05D007058 6.5e-26 121.7 85 62.4
Os12g0529300 Oryza sativa ssp. japonica HOM05D005701 ORTHO05D007058 3.6e-24 115.9 70 68.6
Lsat_1_v5_gn_4_17561 Lactuca sativa HOM05D005701 ORTHO05D007058 2.6e-22 109.8 98 60.2
CSS0004068 Camellia sinensis var. sinensis HOM05D005701 ORTHO05D007058 3.5e-19 99.4 170 41.8
C09p02610 Brassica napus HOM05D005701 ORTHO05D007058 6.5e-18 95.1 82 53.7
HPP92_017198 Vanilla planifolia HOM05D005701 ORTHO05D051565 7.2e-17 91.7 175 36.6
Rhsim11G0018300 Rhododendron simsii HOM05D003327 ORTHO05D004535 1.8e-12 77.0 45 75.6


User provided reference genes

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