Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g02102 Nelumbo nucifera HOM05D004613 ORTHO05D006095 2.9e-171 605.1 305 100.0
TAR365G0571 Trochodendron aralioides HOM05D004613 ORTHO05D006095 9.8e-103 377.5 315 63.5
Cfa006537 Carpinus fangiana HOM05D004613 ORTHO05D006095 4.4e-95 352.1 253 71.1
PSO170G6761 Papaver somniferum HOM05D004613 ORTHO05D006095 2.3e-91 339.7 278 65.1
PSO407G0072 Papaver somniferum HOM05D004613 ORTHO05D006095 2.3e-91 339.7 276 65.6
Ciclev10001987m.g Citrus clementina HOM05D004613 ORTHO05D006095 3.0e-91 339.3 251 67.7
QL03p004304 Quercus lobata HOM05D004613 ORTHO05D006095 5.1e-91 338.6 286 61.9
CiPaw.08G167100 Carya illinoinensis HOM05D004613 ORTHO05D006095 9.5e-90 334.3 253 66.4
MBI17_g29025_MAGBIO Magnolia biondii HOM05D004613 ORTHO05D006095 6.2e-89 331.6 266 66.9
Sopen01g042180 Solanum pennellii HOM05D004613 ORTHO05D006095 6.2e-89 331.6 253 66.0
MD12G1224400 Malus domestica HOM05D004613 ORTHO05D006095 1.1e-88 330.9 275 62.2
Solyc01g098630.3 Solanum lycopersicum HOM05D004613 ORTHO05D006095 1.8e-88 330.1 253 65.6
TWI56G1338 Tripterygium wilfordii HOM05D004613 ORTHO05D006095 3.1e-88 329.3 251 66.1
Manes.09G163100 Manihot esculenta HOM05D004613 ORTHO05D006095 6.8e-88 328.2 254 65.4
Aqoxy2G03209 Aquilegia oxysepala HOM05D004613 ORTHO05D006095 1.5e-87 327.0 257 64.6
Thecc.05G300000 Theobroma cacao HOM05D004613 ORTHO05D006095 1.1e-85 320.9 253 64.8
Eucgr.B02002 Eucalyptus grandis HOM05D004613 ORTHO05D006095 2.4e-85 319.7 253 64.0
CANSAT54G0471 Cannabis sativa HOM05D004613 ORTHO05D006095 3.2e-85 319.3 255 63.5
RcHm_v2.0_Chr3g0454031 Rosa chinensis HOM05D004613 ORTHO05D006095 7.1e-85 318.2 274 59.9
Sed0016876 Sechium edule HOM05D004613 ORTHO05D006095 4.3e-82 308.9 253 62.1
MELO3C015343.2 Cucumis melo HOM05D004613 ORTHO05D006095 1.6e-81 307.0 248 65.3
Dinv40253 Davidia involucrata HOM05D004613 ORTHO05D006095 1.6e-81 307.0 195 75.4
FvH4_6g05290 Fragaria vesca HOM05D004613 ORTHO05D006095 4.7e-81 305.4 274 57.7
Rhsim07G0179300 Rhododendron simsii HOM05D004613 ORTHO05D006095 1.4e-80 303.9 361 47.1
Glyma.20G231400 Glycine max HOM05D004613 ORTHO05D006095 2.4e-80 303.1 298 55.7
Haze_04249 Corylus avellana HOM05D004613 ORTHO05D006095 5.2e-80 302.0 274 59.9
Sc09g0003370 Simmondsia chinensis HOM05D004613 ORTHO05D006095 5.2e-80 302.0 274 56.9
HanXRQChr09g0258721 Helianthus annuus HOM05D004613 ORTHO05D006095 6.9e-80 301.6 274 59.1
FAN14G3061 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.2e-79 300.8 274 57.7
ECA232G1001 Erigeron canadensis HOM05D004613 ORTHO05D006095 1.5e-79 300.4 282 58.5
Potri.013G026700 Populus trichocarpa HOM05D004613 ORTHO05D006095 2.6e-79 299.7 260 60.8
Gohir.D08G229400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 2.2e-78 296.6 273 59.3
Phvul.007G182600 Phaseolus vulgaris HOM05D004613 ORTHO05D006095 2.2e-78 296.6 267 59.2
VMungo0720G0951 Vigna mungo HOM05D004613 ORTHO05D006095 2.9e-78 296.2 267 59.2
FAN09G4458 Fragaria x ananassa HOM05D004613 ORTHO05D006095 3.8e-78 295.8 253 59.3
Lj5g0014952 Lotus japonicus HOM05D004613 ORTHO05D006095 4.9e-78 295.4 276 57.6
Gorai.004G243600 Gossypium raimondii HOM05D004613 ORTHO05D006095 8.4e-78 294.7 273 59.0
FAN02G3501 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.1e-77 294.3 288 54.5
Gohir.A08G212400 Gossypium hirsutum HOM05D004613 ORTHO05D006095 3.2e-77 292.7 273 58.6
CSS0015750 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 5.4e-77 292.0 204 70.1
PGSC0003DMG400028600 Solanum tuberosum HOM05D004613 ORTHO05D006095 5.4e-77 292.0 230 64.3
Lsat_1_v5_gn_8_116060 Lactuca sativa HOM05D004613 ORTHO05D006095 9.3e-77 291.2 253 59.7
FAN05G3359 Fragaria x ananassa HOM05D004613 ORTHO05D006095 1.2e-76 290.8 274 55.5
Nitab4.5_0015025g0020 Nicotiana tabacum HOM05D004613 ORTHO05D006095 1.2e-76 290.8 284 55.6
FAN05G4103 Fragaria x ananassa HOM05D004613 ORTHO05D006095 4.6e-76 288.9 288 53.5
COL.COLO4_13522 Corchorus olitorius HOM05D004613 ORTHO05D006095 6.0e-76 288.5 254 59.4
FAN14G4578 Fragaria x ananassa HOM05D004613 ORTHO05D006095 6.0e-76 288.5 293 53.2
TPR.G2750 Trifolium pratense HOM05D004613 ORTHO05D006095 7.8e-76 288.1 277 57.0
PGR083G0604 Punica granatum HOM05D004613 ORTHO05D006095 6.6e-75 285.0 248 59.3
CsaV3_1G039190 Cucumis sativus L. HOM05D004613 ORTHO05D006095 1.9e-74 283.5 202 69.8
Sp2g20610 Schrenkiella parvula HOM05D004613 ORTHO05D006095 2.5e-74 283.1 270 57.0
Atru.chr2.494 Acer truncatum HOM05D004613 ORTHO05D006095 3.3e-74 282.7 213 65.7
arahy.Tifrunner.gnm1.ann1.R33V11 Arachis hypogaea HOM05D004613 ORTHO05D006095 4.3e-74 282.3 277 56.3
MSTRG.20469 Avicennia marina HOM05D004613 ORTHO05D006095 4.3e-74 282.3 172 79.7
EL10Ac4g09300 Beta vulgaris HOM05D004613 ORTHO05D006095 7.3e-74 281.6 294 51.0
BcaNung02466 Brassica carinata HOM05D004613 ORTHO05D006095 7.3e-74 281.6 269 55.8
THA.LOC104818675 Tarenaya hassleriana HOM05D004613 ORTHO05D006095 9.6e-74 281.2 250 59.6
Aa31LG11G9160 Aethionema arabicum HOM05D004613 ORTHO05D006095 1.6e-73 280.4 255 58.8
BcaNung04365 Brassica carinata HOM05D004613 ORTHO05D006095 1.6e-73 280.4 249 59.4
A06p37600 Brassica napus HOM05D004613 ORTHO05D006095 1.6e-73 280.4 269 56.9
Prupe.6G330700 Prunus persica HOM05D004613 ORTHO05D006095 2.8e-73 279.6 253 58.9
AL6G39630 Arabidopsis lyrata HOM05D004613 ORTHO05D006095 3.6e-73 279.3 229 63.3
CARHR185980 Cardamine hirsuta HOM05D004613 ORTHO05D006095 3.6e-73 279.3 310 51.3
ATR0626G318 Amborella trichopoda HOM05D004613 ORTHO05D006095 6.2e-73 278.5 236 63.1
Thhalv10004565m.g Eutrema salsugineum HOM05D004613 ORTHO05D006095 8.1e-73 278.1 250 58.0
Migut.B01124 Erythranthe guttata HOM05D004613 ORTHO05D006095 1.1e-72 277.7 215 64.2
Cpa.g.sc48.6 Carica papaya HOM05D004613 ORTHO05D006095 4.0e-72 275.8 265 55.1
BraA06t26679Z Brassica rapa HOM05D004613 ORTHO05D006095 6.9e-72 275.0 271 55.0
AT5G27395 Arabidopsis thaliana HOM05D004613 ORTHO05D006095 2.0e-71 273.5 270 55.6
Carub.0006s2516 Capsella rubella HOM05D004613 ORTHO05D006095 2.6e-71 273.1 308 51.0
C07p40710 Brassica napus HOM05D004613 ORTHO05D006095 7.6e-71 271.6 284 52.8
BolC7t44599H Brassica oleracea HOM05D004613 ORTHO05D006095 1.3e-70 270.8 325 48.6
Nitab4.5_0004940g0150 Nicotiana tabacum HOM05D004613 ORTHO05D006095 3.8e-70 269.2 258 57.0
arahy.Tifrunner.gnm1.ann1.LT91QM Arachis hypogaea HOM05D004613 ORTHO05D006095 8.4e-70 268.1 302 51.7
Medtr1g082380 Medicago truncatula HOM05D004613 ORTHO05D006095 1.4e-69 267.3 276 52.5
vmacro05035 Vaccinium macrocarpon HOM05D004613 ORTHO05D006095 2.4e-69 266.5 210 65.2
Cc02_g32610 Coffea canephora HOM05D004613 ORTHO05D006095 5.4e-69 265.4 251 58.2
CDE12G0359 Ceratophyllum demersum HOM05D004613 ORTHO05D006095 3.5e-68 262.7 157 79.0
Lalb_Chr02g0148411 Lupinus albus HOM05D004613 ORTHO05D006095 3.5e-68 262.7 268 53.7
DCAR_015964 Daucus carota HOM05D004613 ORTHO05D006095 1.9e-66 256.9 208 64.9
CAN.G1134.17 Capsicum annuum HOM05D004613 ORTHO05D006095 4.3e-66 255.8 179 69.8
Duzib128G1218 Durio zibethinus HOM05D004613 ORTHO05D006095 8.1e-65 251.5 281 51.6
Zm00001eb329390 Zea mays HOM05D004613 ORTHO05D006095 4.9e-62 242.3 204 57.8
Peaxi162Scf00434g00335 Petunia axillaris HOM05D004613 ORTHO05D006095 8.4e-62 241.5 172 69.2
GSVIVG01022058001 Vitis vinifera HOM05D004613 ORTHO05D006095 4.2e-61 239.2 170 67.6
Hund07039 Selenicereus undatus HOM05D004613 ORTHO05D006095 1.6e-60 237.3 253 53.8
HPP92_006941 Vanilla planifolia HOM05D004613 ORTHO05D006095 2.3e-59 233.4 180 63.9
Actinidia05726 Actinidia chinensis HOM05D004613 ORTHO05D006095 8.7e-59 231.5 270 46.3
Sabra13G0027500 Salix brachista HOM05D004613 ORTHO05D006095 1.4e-56 224.2 337 43.9
Lj9A681T39 Lonicera japonica HOM05D004613 ORTHO05D006095 1.5e-55 220.7 128 82.0
PGR083G1611 Punica granatum HOM05D004613 ORTHO05D006095 1.0e-54 218.0 259 47.9
SalBow8G2842 Salvia bowleyana HOM05D004613 ORTHO05D006095 1.7e-54 217.2 201 53.7
MD04G1209800 Malus domestica HOM05D004613 ORTHO05D006095 3.2e-53 213.0 236 50.8
Oeu012099.1 Olea europaea HOM05D004613 ORTHO05D006095 2.1e-52 210.3 218 54.1
SEGI_25140 Sequoiadendron giganteum HOM05D004613 ORTHO05D006095 6.7e-51 205.3 155 63.9
Glyma.10G157300 Glycine max HOM05D004613 ORTHO05D006095 3.3e-50 203.0 267 46.8
ClCG03G016790 Citrullus lanatus HOM05D000665 ORTHO05D006095 7.6e-47 191.8 296 42.9
SHI18214 Sapria himalayana HOM05D004613 ORTHO05D006095 1.7e-41 174.1 133 63.2
SGA_v2.0_scaffold199G41179 Striga asiatica HOM05D004613 ORTHO05D006095 1.2e-39 167.9 244 43.9
Mapoly0007s0105 Marchantia polymorpha HOM05D004613 ORTHO05D006095 2.1e-36 157.1 168 45.8
Pp3c24_5170 Physcomitrium patens HOM05D004613 ORTHO05D006095 3.6e-36 156.4 227 38.3
unitig_747.g21346 Utricularia gibba HOM05D004613 ORTHO05D006095 6.1e-36 155.6 160 51.9
SMO115G0217 Selaginella moellendorffii HOM05D004613 ORTHO05D006095 1.8e-35 154.1 146 52.1
BcaB04g19666 Brassica carinata HOM05D004613 ORTHO05D006095 1.5e-34 151.0 150 54.0
CBR_g37761 Chara braunii HOM05D004613 ORTHO05D006095 5.5e-29 132.5 167 42.5
AUR62005113 Chenopodium quinoa HOM05D004613 ORTHO05D006095 3.3e-26 123.2 253 36.4
HanXRQChr13g0397031 Helianthus annuus HOM05D004613 ORTHO05D006095 1.2e-20 104.8 116 53.4
AUR62000861 Chenopodium quinoa HOM05D004613 ORTHO05D006095 1.1e-16 91.7 110 47.3
AagrBONN_evm.TU.Sc2ySwM_117.373 Anthoceros agrestis HOM05D004613 ORTHO05D006095 1.0e-14 85.1 89 44.9
MCO14G439 Micromonas commoda HOM05D004613 ORTHO05D006095 1.0e-11 75.1 151 31.1
A09p05250 Brassica napus HOM05D004613 ORTHO05D006095 3.0e-11 73.6 49 71.4
BolC1t02515H Brassica oleracea HOM05D004613 ORTHO05D006095 4.0e-11 73.2 71 53.5
GSVIVG01000001001 Vitis vinifera HOM05D004613 ORTHO05D006095 2.0e-10 70.9 98 45.9
C04p20640 Brassica napus HOM05D004613 ORTHO05D006095 2.6e-10 70.5 71 52.1
C09p05710 Brassica napus HOM05D004613 ORTHO05D006095 2.6e-10 70.5 50 64.0
BolC4t23591H Brassica oleracea HOM05D004613 ORTHO05D006095 2.6e-10 70.5 71 52.1
BcaC04g22128 Brassica carinata HOM05D004613 ORTHO05D006095 7.5e-10 68.9 96 41.7
C09p23030 Brassica napus HOM05D004613 ORTHO05D006095 7.5e-10 68.9 98 40.8
CSS0002320 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 7.5e-10 68.9 49 67.3
CSS0009134 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 7.5e-10 68.9 49 67.3
CSS0011661 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 7.5e-10 68.9 49 67.3
CSS0019992 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 7.5e-10 68.9 49 67.3
CSS0023662 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 7.5e-10 68.9 49 67.3
CSS0033019 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 7.5e-10 68.9 49 67.3
CSS0041443 Camellia sinensis var. sinensis HOM05D004613 ORTHO05D006095 7.5e-10 68.9 49 67.3
C05p42320 Brassica napus HOM05D004613 ORTHO05D006095 2.2e-09 67.4 71 50.7
BolC5t32960H Brassica oleracea HOM05D004613 ORTHO05D006095 2.2e-09 67.4 71 50.7
BolC4t23587H Brassica oleracea HOM05D004613 ORTHO05D006095 3.7e-09 66.6 58 55.2
C07p27290 Brassica napus HOM05D004613 ORTHO05D040533 4.8e-09 66.2 58 55.2
BolC7t43257H Brassica oleracea HOM05D004613 ORTHO05D040533 4.8e-09 66.2 58 55.2
C01p25640 Brassica napus HOM05D004613 ORTHO05D006095 8.3e-09 65.5 58 55.2
BcaC09g50421 Brassica carinata HOM05D004613 ORTHO05D006095 3.1e-08 63.5 57 54.4
C09p29080 Brassica napus HOM05D004613 ORTHO05D006095 3.1e-08 63.5 71 47.9
BcaC02g11087 Brassica carinata HOM05D004010 ORTHO05D006095 1.2e-07 61.6 73 45.2
BcaC07g37284 Brassica carinata HOM05D004613 ORTHO05D006095 1.6e-07 61.2 58 51.7
BolC8t47558H Brassica oleracea HOM05D004613 ORTHO05D006095 1.6e-07 61.2 58 51.7
C03p78440 Brassica napus HOM05D012085 ORTHO05D006095 2.0e-07 60.8 69 46.4
C09p20670 Brassica napus HOM05D004613 ORTHO05D006095 7.7e-07 58.9 49 55.1


User provided reference genes

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