Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g02093 Nelumbo nucifera HOM05D006416 ORTHO05D008054 3.3e-159 565.1 304 100.0
Nn4g26146 Nelumbo nucifera HOM05D006416 ORTHO05D008054 5.3e-141 504.6 304 88.5
TAR362G1050 Trochodendron aralioides HOM05D006416 ORTHO05D008054 7.2e-130 467.6 304 80.6
Rhsim07G0179600 Rhododendron simsii HOM05D006416 ORTHO05D008054 5.7e-127 458.0 304 78.9
Actinidia23608 Actinidia chinensis HOM05D006416 ORTHO05D008054 2.6e-124 449.1 304 78.3
Prupe.6G330400 Prunus persica HOM05D006416 ORTHO05D008054 5.0e-123 444.9 304 77.0
QL03p004338 Quercus lobata HOM05D006416 ORTHO05D008054 1.1e-122 443.7 303 78.5
Lj9A681T37 Lonicera japonica HOM05D006416 ORTHO05D008054 1.6e-121 439.9 305 77.0
GSVIVG01000004001 Vitis vinifera HOM05D006416 ORTHO05D008054 4.7e-121 438.3 305 77.4
ClCG02G016070 Citrullus lanatus HOM05D006416 ORTHO05D008054 2.3e-120 436.0 304 75.3
Aqoxy2G03216 Aquilegia oxysepala HOM05D006416 ORTHO05D008054 3.0e-120 435.6 304 73.4
CiPaw.08G166800 Carya illinoinensis HOM05D006416 ORTHO05D008054 4.0e-120 435.3 304 74.7
MELO3C004307.2 Cucumis melo HOM05D006416 ORTHO05D008054 6.8e-120 434.5 304 75.0
Thecc.05G308500 Theobroma cacao HOM05D006416 ORTHO05D008054 8.8e-120 434.1 304 74.7
EL10Ac4g09303 Beta vulgaris HOM05D006416 ORTHO05D008054 1.2e-119 433.7 304 76.3
Duzib128G1696 Durio zibethinus HOM05D006416 ORTHO05D008054 1.2e-119 433.7 304 75.0
MBI19_g27532_MAGBIO Magnolia biondii HOM05D006416 ORTHO05D008054 1.2e-119 433.7 304 77.3
Gohir.A11G262900 Gossypium hirsutum HOM05D006416 ORTHO05D008054 5.7e-119 431.4 304 74.3
CANSAT54G1414 Cannabis sativa HOM05D006416 ORTHO05D008054 1.7e-118 429.9 305 75.7
Phvul.007G182400 Phaseolus vulgaris HOM05D006416 ORTHO05D008054 2.8e-118 429.1 304 74.7
Gohir.D11G272900 Gossypium hirsutum HOM05D006416 ORTHO05D008054 3.7e-118 428.7 304 74.0
Gorai.007G294200 Gossypium raimondii HOM05D006416 ORTHO05D008054 3.7e-118 428.7 305 74.1
Potri.013G026400 Populus trichocarpa HOM05D006416 ORTHO05D008054 3.7e-118 428.7 305 76.1
Ah.06g190130 Amaranthus hybridus HOM05D006416 ORTHO05D008054 1.1e-117 427.2 305 76.4
Ciclev10002001m.g Citrus clementina HOM05D006416 ORTHO05D008054 1.8e-117 426.4 309 75.4
Cpa.g.sc48.9 Carica papaya HOM05D006416 ORTHO05D008054 7.0e-117 424.5 304 74.7
Manes.09G163500 Manihot esculenta HOM05D006416 ORTHO05D008054 7.0e-117 424.5 304 75.0
Nitab4.5_0007238g0010 Nicotiana tabacum HOM05D006416 ORTHO05D008054 7.0e-117 424.5 304 74.7
Oeu043843.1 Olea europaea HOM05D006416 ORTHO05D008054 7.0e-117 424.5 304 74.0
Nitab4.5_0004940g0060 Nicotiana tabacum HOM05D006416 ORTHO05D008054 1.2e-116 423.7 304 75.0
Sabra05G0037800 Salix brachista HOM05D006416 ORTHO05D008054 2.0e-116 422.9 305 75.4
Sed0000831 Sechium edule HOM05D006416 ORTHO05D008054 5.9e-116 421.4 304 75.0
FAN02G3793 Fragaria x ananassa HOM05D006416 ORTHO05D008054 7.7e-116 421.0 306 74.5
Glyma.20G231600 Glycine max HOM05D006416 ORTHO05D008054 7.7e-116 421.0 305 74.1
Sopen01g042190 Solanum pennellii HOM05D006416 ORTHO05D008054 1.0e-115 420.6 304 75.0
PGSC0003DMG402028574 Solanum tuberosum HOM05D006416 ORTHO05D008054 1.0e-115 420.6 304 75.7
Glyma.10G157100 Glycine max HOM05D006416 ORTHO05D008054 1.3e-115 420.2 304 74.3
Lalb_Chr06g0167821 Lupinus albus HOM05D006416 ORTHO05D008054 1.3e-115 420.2 304 73.0
Duzib177G0710 Durio zibethinus HOM05D006416 ORTHO05D008054 2.2e-115 419.5 304 73.4
FAN09G2836 Fragaria x ananassa HOM05D006416 ORTHO05D008054 2.2e-115 419.5 305 74.1
Eucgr.H04456 Eucalyptus grandis HOM05D006416 ORTHO05D008054 2.9e-115 419.1 304 73.4
Oeu032896.2 Olea europaea HOM05D006416 ORTHO05D008054 3.8e-115 418.7 304 72.7
CAN.G1134.18 Capsicum annuum HOM05D006416 ORTHO05D008054 6.5e-115 417.9 304 75.7
Cfa006543 Carpinus fangiana HOM05D006416 ORTHO05D008054 6.5e-115 417.9 304 72.7
CDE08G0960 Ceratophyllum demersum HOM05D006416 ORTHO05D008054 1.1e-114 417.2 305 73.4
FAN05G2936 Fragaria x ananassa HOM05D006416 ORTHO05D008054 1.1e-114 417.2 304 74.0
RcHm_v2.0_Chr3g0454061 Rosa chinensis HOM05D006416 ORTHO05D008054 1.1e-114 417.2 305 74.1
Solyc01g098640.3 Solanum lycopersicum HOM05D006416 ORTHO05D008054 1.1e-114 417.2 304 74.7
COL.COLO4_13518 Corchorus olitorius HOM05D006416 ORTHO05D008054 1.5e-114 416.8 305 72.1
Haze_04238 Corylus avellana HOM05D006416 ORTHO05D008054 1.9e-114 416.4 304 73.4
FvH4_6g05320 Fragaria vesca HOM05D006416 ORTHO05D008054 1.9e-114 416.4 306 73.9
FAN05G0060 Fragaria x ananassa HOM05D006416 ORTHO05D008054 2.5e-114 416.0 304 74.0
arahy.Tifrunner.gnm1.ann1.ICF70N Arachis hypogaea HOM05D006416 ORTHO05D008054 4.2e-114 415.2 298 75.8
FAN14G3791 Fragaria x ananassa HOM05D006416 ORTHO05D008054 5.5e-114 414.8 306 73.5
FAN14G2526 Fragaria x ananassa HOM05D006416 ORTHO05D008054 1.2e-113 413.7 306 73.5
Potri.005G038700 Populus trichocarpa HOM05D006416 ORTHO05D008054 2.1e-113 412.9 305 73.1
arahy.Tifrunner.gnm1.ann1.L7FLNG Arachis hypogaea HOM05D006416 ORTHO05D008054 2.7e-113 412.5 298 75.2
PGR031G2709 Punica granatum HOM05D006416 ORTHO05D008054 3.6e-113 412.1 304 73.0
Ca_10088_v3 Cicer arietinum L. HOM05D006416 ORTHO05D008054 6.1e-113 411.4 294 73.1
SGA_v2.0_scaffold204G41638 Striga asiatica HOM05D006416 ORTHO05D008054 8.0e-113 411.0 304 73.4
CsaV3_2G004910 Cucumis sativus L. HOM05D006416 ORTHO05D008054 1.0e-112 410.6 318 69.2
CSS0022908 Camellia sinensis var. sinensis HOM05D006416 ORTHO05D008054 1.4e-112 410.2 301 73.8
PSO407G0317 Papaver somniferum HOM05D006416 ORTHO05D008054 1.4e-112 410.2 305 72.1
MD04G1209400 Malus domestica HOM05D006416 ORTHO05D008054 1.8e-112 409.8 305 70.8
TWI12G1406 Tripterygium wilfordii HOM05D006416 ORTHO05D008054 1.8e-112 409.8 304 71.7
CDE02G0677 Ceratophyllum demersum HOM05D006416 ORTHO05D008054 3.0e-112 409.1 305 72.5
MD12G1224000 Malus domestica HOM05D006416 ORTHO05D008054 5.2e-112 408.3 305 71.1
Cc02_g32670 Coffea canephora HOM05D006416 ORTHO05D008054 1.2e-111 407.1 304 72.0
Atru.chr2.491 Acer truncatum HOM05D006416 ORTHO05D008054 1.5e-111 406.8 308 72.1
Peaxi162Scf00434g00329 Petunia axillaris HOM05D006416 ORTHO05D008054 2.0e-111 406.4 305 70.5
Lsat_1_v5_gn_8_116020 Lactuca sativa HOM05D006416 ORTHO05D008054 3.4e-111 405.6 308 72.1
Dinv22903 Davidia involucrata HOM05D006416 ORTHO05D008054 9.8e-111 404.1 227 89.9
PSO170G0754 Papaver somniferum HOM05D006416 ORTHO05D008054 3.7e-110 402.1 304 70.1
ATR0626G312 Amborella trichopoda HOM05D006416 ORTHO05D008054 4.8e-110 401.7 307 72.6
TPR.G2722 Trifolium pratense HOM05D006416 ORTHO05D008054 1.4e-109 400.2 295 71.2
THA.LOC104823736 Tarenaya hassleriana HOM05D006416 ORTHO05D008054 2.4e-109 399.4 307 70.4
Lj5g0006935 Lotus japonicus HOM05D006416 ORTHO05D008054 4.1e-109 398.7 304 70.7
Psat6g148880 Pisum sativum HOM05D006416 ORTHO05D008054 4.1e-109 398.7 294 70.7
Medtr1g082420 Medicago truncatula HOM05D006416 ORTHO05D008054 1.2e-108 397.1 306 68.3
MSTRG.2929 Avicennia marina HOM05D006416 ORTHO05D008054 3.5e-108 395.6 304 71.7
HPP92_006953 Vanilla planifolia HOM05D006416 ORTHO05D008054 3.8e-107 392.1 310 70.0
Sc16g0008340 Simmondsia chinensis HOM05D006416 ORTHO05D008054 4.2e-106 388.7 304 69.7
SpUn0002_0460 Schrenkiella parvula HOM05D006416 ORTHO05D008054 2.8e-105 386.0 279 73.8
BcaB04g20144 Brassica carinata HOM05D006416 ORTHO05D008054 4.7e-105 385.2 304 70.1
BcaC09g49606 Brassica carinata HOM05D006416 ORTHO05D008054 4.7e-105 385.2 279 74.2
A01p27150 Brassica napus HOM05D006416 ORTHO05D008054 4.7e-105 385.2 279 74.2
C01p34560 Brassica napus HOM05D006416 ORTHO05D008054 4.7e-105 385.2 279 74.2
BolC1t03427H Brassica oleracea HOM05D006416 ORTHO05D008054 4.7e-105 385.2 279 74.2
BraA01t02850Z Brassica rapa HOM05D006416 ORTHO05D008054 4.7e-105 385.2 279 74.2
Migut.H00517 Erythranthe guttata HOM05D006416 ORTHO05D008054 4.7e-105 385.2 304 69.1
DCAR_029435 Daucus carota HOM05D006416 ORTHO05D008054 1.8e-104 383.3 385 58.2
ECA232G3707 Erigeron canadensis HOM05D006416 ORTHO05D008054 1.8e-104 383.3 235 82.6
Aa31LG2G11890 Aethionema arabicum HOM05D006416 ORTHO05D008054 2.0e-103 379.8 307 67.8
HanXRQChr15g0486581 Helianthus annuus HOM05D006416 ORTHO05D008054 2.0e-103 379.8 304 68.4
CARHR055910 Cardamine hirsuta HOM05D006416 ORTHO05D008054 2.6e-103 379.4 304 68.4
AT1G54780 Arabidopsis thaliana HOM05D006416 ORTHO05D008054 3.4e-103 379.0 280 72.1
Thhalv10023632m.g Eutrema salsugineum HOM05D006416 ORTHO05D008054 3.4e-103 379.0 278 74.5
AL1G65240 Arabidopsis lyrata HOM05D006416 ORTHO05D008054 7.5e-103 377.9 280 71.8
Carub.0002s0864 Capsella rubella HOM05D006416 ORTHO05D008054 7.5e-103 377.9 281 72.2
HanXRQChr09g0258731 Helianthus annuus HOM05D006416 ORTHO05D008054 6.3e-102 374.8 304 68.8
Zm00001eb346800 Zea mays HOM05D006416 ORTHO05D008054 4.1e-101 372.1 288 70.8
SalBow1G1453 Salvia bowleyana HOM05D006416 ORTHO05D008054 7.0e-101 371.3 225 84.0
unitig_899.g15132 Utricularia gibba HOM05D000909 ORTHO05D000928 1.6e-100 370.2 294 67.7
Os05g0401100 Oryza sativa ssp. japonica HOM05D006416 ORTHO05D008054 7.8e-100 367.9 234 79.1
Pp3c11_19220 Physcomitrium patens HOM05D006416 ORTHO05D008054 4.9e-94 348.6 231 77.5
Hma1.2p1_0666F.1_g199430 Hydrangea macrophylla HOM05D006416 ORTHO05D008054 4.1e-93 345.5 237 74.7
AagrBONN_evm.TU.Sc2ySwM_228.2947 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.2e-92 344.0 225 77.3
Pp3c7_6980 Physcomitrium patens HOM05D006416 ORTHO05D008054 1.6e-92 343.6 226 77.4
Migut.C00218 Erythranthe guttata HOM05D006416 ORTHO05D008054 2.5e-90 336.3 205 82.4
SEGI_37406 Sequoiadendron giganteum HOM05D006416 ORTHO05D008054 2.0e-87 326.6 226 73.9
SMO329G0005 Selaginella moellendorffii HOM05D006416 ORTHO05D008054 2.2e-86 323.2 221 72.4
Mapoly0079s0006 Marchantia polymorpha HOM05D006416 ORTHO05D008054 2.7e-84 316.2 235 70.2
SMO353G0282 Selaginella moellendorffii HOM05D006416 ORTHO05D008054 1.1e-77 294.3 203 70.9
CBR_g30711 Chara braunii HOM05D006416 ORTHO05D008054 4.0e-72 275.8 229 61.6
Lalb_Chr02g0148391 Lupinus albus HOM05D006416 ORTHO05D008054 6.4e-70 268.5 221 66.5
Aa31LG1G5580 Aethionema arabicum HOM05D006416 ORTHO05D008054 8.4e-62 241.5 137 84.7
Hma1.2p1_0666F.1_g199440 Hydrangea macrophylla HOM05D006416 ORTHO05D008054 3.0e-59 233.0 144 77.8
Cre03.g182150 Chlamydomonas reinhardtii HOM05D006416 ORTHO05D008054 1.5e-50 204.1 222 47.7
MCO01G659 Micromonas commoda HOM05D006416 ORTHO05D008054 5.6e-50 202.2 209 50.7
PRCOL_00003436 Prasinoderma coloniale HOM05D006416 ORTHO05D008054 5.0e-38 162.5 218 39.4
arahy.Tifrunner.gnm1.ann1.SGB0EA Arachis hypogaea HOM05D006416 ORTHO05D008054 2.5e-37 160.2 86 90.7
Dinv23978 Davidia involucrata HOM05D006416 ORTHO05D008054 7.9e-36 155.2 89 87.6
Lalb_Chr02g0148401 Lupinus albus HOM05D006416 ORTHO05D008054 6.7e-35 152.1 83 90.4
Haze_01725 Corylus avellana HOM05D006416 ORTHO05D008054 4.3e-26 122.9 64 87.5
AUR62000865 Chenopodium quinoa HOM05D006416 ORTHO05D008054 5.3e-08 62.8 93 46.2


User provided reference genes

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