Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g02046 Nelumbo nucifera HOM05D005351 ORTHO05D006542 0.0e+00 1865.1 1010 100.0
Nn3g19476 Nelumbo nucifera HOM05D005351 ORTHO05D006542 0.0e+00 1453.0 956 84.5
TAR626G0279 Trochodendron aralioides HOM05D005351 ORTHO05D006542 7.1e-267 924.5 1038 55.5
Dinv40885 Davidia involucrata HOM05D005351 ORTHO05D006542 9.5e-195 684.9 982 48.0
CSS0045517 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 2.0e-192 677.2 1040 46.1
CSS0029070 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 7.5e-192 675.2 1040 46.0
Haze_09867 Corylus avellana HOM05D005351 ORTHO05D006542 6.0e-189 665.6 1025 45.7
Cfa021891 Carpinus fangiana HOM05D005351 ORTHO05D006542 2.5e-187 660.2 1025 45.2
Sabra16G0244200 Salix brachista HOM05D005351 ORTHO05D006542 2.4e-174 617.1 1048 42.8
MBI14_g37362_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 4.8e-170 602.8 995 45.3
MD11G1037100 Malus domestica HOM05D005351 ORTHO05D006542 6.9e-169 599.0 1041 42.7
Actinidia03651 Actinidia chinensis HOM05D005351 ORTHO05D006542 9.9e-168 595.1 1023 43.0
PSO210G4843 Papaver somniferum HOM05D005351 ORTHO05D006542 6.4e-167 592.4 1035 43.4
Duzib213G0009 Durio zibethinus HOM05D005351 ORTHO05D006542 2.4e-166 590.5 1023 42.9
PSO210G4950 Papaver somniferum HOM05D005351 ORTHO05D006542 1.4e-161 574.7 1032 44.1
FAN21G2745 Fragaria x ananassa HOM05D005351 ORTHO05D006542 1.5e-160 571.2 1030 41.7
Prupe.6G028400 Prunus persica HOM05D005351 ORTHO05D006542 2.9e-159 567.0 987 42.2
vmacro09623 Vaccinium macrocarpon HOM05D005351 ORTHO05D006542 4.9e-159 566.2 1023 42.2
FAN25G1298 Fragaria x ananassa HOM05D005351 ORTHO05D006542 1.6e-157 561.2 1029 41.8
FAN11G1247 Fragaria x ananassa HOM05D005351 ORTHO05D006542 6.0e-157 559.3 1030 40.9
FAN16G2746 Fragaria x ananassa HOM05D005351 ORTHO05D006542 7.9e-157 558.9 1030 41.0
TWI38G2212 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 1.0e-156 558.5 1055 40.9
GSVIVG01014743001 Vitis vinifera HOM05D005351 ORTHO05D006542 6.7e-156 555.8 1045 39.9
Thecc.07G007900 Theobroma cacao HOM05D005351 ORTHO05D006542 1.6e-154 551.2 1036 42.0
Manes.01G003500 Manihot esculenta HOM05D005351 ORTHO05D006542 3.7e-154 550.1 1046 41.6
Gorai.009G450800 Gossypium raimondii HOM05D005351 ORTHO05D006542 4.8e-154 549.7 1037 41.2
Gohir.D05G384000 Gossypium hirsutum HOM05D005351 ORTHO05D006542 8.2e-154 548.9 1040 41.2
Rhsim04G0010500 Rhododendron simsii HOM05D005351 ORTHO05D006542 6.9e-153 545.8 1156 39.7
Gohir.A04G005700 Gossypium hirsutum HOM05D005351 ORTHO05D006542 1.5e-152 544.7 1036 41.6
Lj8A180G96 Lonicera japonica HOM05D005351 ORTHO05D006542 2.6e-152 543.9 1041 41.2
MD03G1035400 Malus domestica HOM05D005351 ORTHO05D006542 1.0e-151 542.0 968 41.8
Dinv10362 Davidia involucrata HOM05D005351 ORTHO05D006542 6.5e-151 539.3 918 44.1
RcHm_v2.0_Chr5g0075571 Rosa chinensis HOM05D005351 ORTHO05D006542 4.2e-150 536.6 963 41.6
TWI38G1324 Tripterygium wilfordii HOM05D005351 ORTHO05D006542 1.5e-147 528.1 1040 39.9
Phvul.006G059260 Phaseolus vulgaris HOM05D005351 ORTHO05D006542 1.1e-142 511.9 1053 39.3
Potri.001G371600 Populus trichocarpa HOM05D005351 ORTHO05D006542 1.1e-142 511.9 914 42.0
QL08p002685 Quercus lobata HOM05D005351 ORTHO05D006542 1.4e-142 511.5 1000 41.7
COL.COLO4_07741 Corchorus olitorius HOM05D005351 ORTHO05D006542 1.6e-141 508.1 1038 39.6
VMungo0540G1402 Vigna mungo HOM05D005351 ORTHO05D006542 1.4e-140 505.0 1051 40.1
Aqoxy1G04296 Aquilegia oxysepala HOM05D005351 ORTHO05D006542 1.8e-140 504.6 1065 38.9
PGSC0003DMG400014404 Solanum tuberosum HOM05D005351 ORTHO05D006542 8.8e-140 502.3 1027 39.8
Lj6g0009098 Lotus japonicus HOM05D005351 ORTHO05D006542 1.5e-139 501.5 1036 39.0
Nitab4.5_0005478g0030 Nicotiana tabacum HOM05D005351 ORTHO05D006542 2.0e-139 501.1 1031 38.8
CiPaw.12G140700 Carya illinoinensis HOM05D005351 ORTHO05D006542 1.7e-138 498.0 847 43.2
Nitab4.5_0003328g0090 Nicotiana tabacum HOM05D005351 ORTHO05D006542 1.8e-137 494.6 1031 38.7
Cc05_g15290 Coffea canephora HOM05D005351 ORTHO05D006542 4.1e-137 493.4 1052 40.4
Cpa.g.sc12.108 Carica papaya HOM05D005351 ORTHO05D006542 1.2e-136 491.9 990 39.0
CsaV3_7G023840 Cucumis sativus L. HOM05D005351 ORTHO05D006542 3.2e-134 483.8 1033 38.5
CAN.G492.50 Capsicum annuum HOM05D005351 ORTHO05D006542 3.0e-132 477.2 1024 40.1
Medtr3g461030 Medicago truncatula HOM05D005351 ORTHO05D006542 3.9e-132 476.9 1051 39.3
Sed0019267 Sechium edule HOM05D005351 ORTHO05D006542 3.9e-132 476.9 1041 38.1
ATR0751G017 Amborella trichopoda HOM05D005351 ORTHO05D006542 5.1e-132 476.5 1082 39.1
Oeu049420.1 Olea europaea HOM05D005351 ORTHO05D006542 4.4e-131 473.4 1045 38.9
SalBow8G3039 Salvia bowleyana HOM05D005351 ORTHO05D006542 2.2e-127 461.1 1039 37.4
Ca_12455_v3 Cicer arietinum L. HOM05D005351 ORTHO05D006542 5.0e-127 459.9 1050 37.4
Hund23091 Selenicereus undatus HOM05D005351 ORTHO05D006542 2.7e-125 454.1 1043 38.4
FvH4_3g42241 Fragaria vesca HOM05D005351 ORTHO05D006542 4.7e-125 453.4 984 38.4
Lalb_Chr15g0082311 Lupinus albus HOM05D005351 ORTHO05D006542 8.0e-125 452.6 1041 37.7
DCAR_013254 Daucus carota HOM05D005351 ORTHO05D006542 5.2e-124 449.9 1042 38.2
PGR083G0334 Punica granatum HOM05D005351 ORTHO05D006542 3.3e-123 447.2 1059 36.7
Hma1.2p1_0193F.1_g083920 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 8.2e-122 442.6 1111 36.7
THA.LOC104815687 Tarenaya hassleriana HOM05D005351 ORTHO05D006542 5.3e-121 439.9 1035 36.7
Migut.M01635 Erythranthe guttata HOM05D005351 ORTHO05D006542 1.2e-120 438.7 1031 37.4
MSTRG.15808 Avicennia marina HOM05D005351 ORTHO05D006542 2.9e-119 434.1 1033 37.5
AUR62017130 Chenopodium quinoa HOM05D005351 ORTHO05D006542 1.6e-117 428.3 1054 37.4
AUR62035679 Chenopodium quinoa HOM05D005351 ORTHO05D006542 3.6e-117 427.2 1049 37.3
Ciclev10007493m.g Citrus clementina HOM05D005351 ORTHO05D006542 1.4e-116 425.2 862 40.5
TPR.G17956 Trifolium pratense HOM05D005351 ORTHO05D006542 8.8e-116 422.5 1046 37.2
Psat5g166400 Pisum sativum HOM05D005351 ORTHO05D006542 7.0e-113 412.9 1066 36.4
CANSAT11G0508 Cannabis sativa HOM05D005351 ORTHO05D006542 1.7e-111 408.3 930 38.2
HanXRQChr11g0334131 Helianthus annuus HOM05D005351 ORTHO05D006542 6.5e-111 406.4 1023 36.6
Ah.06g181500 Amaranthus hybridus HOM05D005351 ORTHO05D006542 8.5e-111 406.0 1075 36.4
Carub.0003s1261 Capsella rubella HOM05D005351 ORTHO05D006542 8.5e-111 406.0 1031 34.6
SGA_v2.0_scaffold168G38576 Striga asiatica HOM05D005351 ORTHO05D006542 3.2e-110 404.1 844 38.7
AT3G13225 Arabidopsis thaliana HOM05D005351 ORTHO05D006542 2.1e-109 401.4 1027 35.4
ECA236G3149 Erigeron canadensis HOM05D005351 ORTHO05D006542 2.7e-109 401.0 1019 35.7
Solyc10g005850.4 Solanum lycopersicum HOM05D005351 ORTHO05D006542 3.6e-109 400.6 957 37.0
Atru.chr2.3836 Acer truncatum HOM05D005351 ORTHO05D006542 1.5e-107 395.2 790 39.6
EL10Ac4g07541 Beta vulgaris HOM05D005351 ORTHO05D006542 1.5e-107 395.2 1098 35.7
Glyma.08G332700 Glycine max HOM05D005351 ORTHO05D006542 2.6e-107 394.4 960 37.9
Sopen10g001810 Solanum pennellii HOM05D005351 ORTHO05D006542 1.4e-105 388.7 958 36.4
SEGI_31992 Sequoiadendron giganteum HOM05D005351 ORTHO05D006542 7.0e-105 386.3 1134 33.7
ClCG09G021540 Citrullus lanatus HOM05D005351 ORTHO05D006542 1.6e-104 385.2 1043 33.7
Sp3g11430 Schrenkiella parvula HOM05D005351 ORTHO05D006542 2.7e-104 384.4 1050 35.1
HPP92_017874 Vanilla planifolia HOM05D005351 ORTHO05D006542 1.2e-101 375.6 999 35.6
CDE05G2589 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 1.8e-100 371.7 1032 35.3
Peaxi162Scf00018g00155 Petunia axillaris HOM05D005351 ORTHO05D006542 4.0e-100 370.5 924 36.5
arahy.Tifrunner.gnm1.ann1.1R5J8M Arachis hypogaea HOM05D005351 ORTHO05D006542 1.2e-99 369.0 1027 35.6
Eucgr.F02026 Eucalyptus grandis HOM05D005351 ORTHO05D006542 2.6e-99 367.9 893 37.3
Glyma.18G074300 Glycine max HOM05D005351 ORTHO05D006542 7.5e-99 366.3 955 36.1
BcaC09g48295 Brassica carinata HOM05D005351 ORTHO05D006542 9.8e-99 365.9 1047 34.9
Aa31LG8G460 Aethionema arabicum HOM05D005351 ORTHO05D006542 1.4e-97 362.1 1070 33.6
BolC1t05130H Brassica oleracea HOM05D005351 ORTHO05D006542 3.5e-96 357.5 1054 34.5
BraA01t04066Z Brassica rapa HOM05D005351 ORTHO05D006542 2.9e-95 354.4 1064 33.0
Os06g0298400 Oryza sativa ssp. japonica HOM05D005351 ORTHO05D006542 5.6e-94 350.1 1023 33.9
BcaB04g21006 Brassica carinata HOM05D005351 ORTHO05D006542 1.5e-91 342.0 1029 34.2
MELO3C024969.2 Cucumis melo HOM05D005351 ORTHO05D006542 7.5e-91 339.7 937 34.4
arahy.Tifrunner.gnm1.ann1.LDHF9L Arachis hypogaea HOM05D005351 ORTHO05D006542 7.0e-89 333.2 1013 34.0
unitig_0.g707 Utricularia gibba HOM05D005351 ORTHO05D006542 4.6e-88 330.5 1034 33.5
C01p51820 Brassica napus HOM05D005351 ORTHO05D006542 6.6e-87 326.6 982 33.9
Sc03g0011530 Simmondsia chinensis HOM05D005351 ORTHO05D006542 8.9e-84 316.2 679 40.1
A01p40300 Brassica napus HOM05D005351 ORTHO05D006542 4.4e-83 313.9 987 32.0
Zm00001eb381020 Zea mays HOM05D005351 ORTHO05D006542 4.1e-81 307.4 1020 32.8
AL3G25030 Arabidopsis lyrata HOM05D005351 ORTHO05D006542 1.2e-80 305.8 899 33.4
CARHR087840 Cardamine hirsuta HOM05D005351 ORTHO05D006542 1.5e-78 298.9 925 31.0
Thhalv10020110m.g Eutrema salsugineum HOM05D005351 ORTHO05D006542 9.5e-78 296.2 917 33.2
CDE05G0998 Ceratophyllum demersum HOM05D005351 ORTHO05D006542 3.5e-72 277.7 1004 30.6
Zm00001eb281160 Zea mays HOM05D005351 ORTHO05D006542 8.6e-71 273.1 1003 33.2
Lsat_1_v5_gn_7_114900 Lactuca sativa HOM05D005351 ORTHO05D006542 9.6e-70 269.6 1085 29.6
CSS0030315 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 3.2e-65 254.6 449 39.2
CSS0028997 Camellia sinensis var. sinensis HOM05D005351 ORTHO05D006542 1.6e-64 252.3 441 39.7
PSO782G2183 Papaver somniferum HOM05D005351 ORTHO05D006542 2.0e-59 235.3 155 77.4
Actinidia00844 Actinidia chinensis HOM05D005351 ORTHO05D006542 6.9e-52 210.3 483 36.9
Oeu017994.1 Olea europaea HOM05D005351 ORTHO05D006542 1.5e-51 209.1 227 55.5
MBI14_g27041_MAGBIO Magnolia biondii HOM05D005351 ORTHO05D006542 1.7e-50 205.7 151 70.2
AagrBONN_evm.TU.Sc2ySwM_368.1722__1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 3.7e-37 161.4 1086 27.2
CBR_g12012 Chara braunii HOM05D005351 ORTHO05D006542 3.4e-35 154.8 206 46.6
Hma1.2p1_3473F.1_g336240 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 1.8e-31 142.5 299 42.5
SMO164G0196 Selaginella moellendorffii HOM05D005351 ORTHO05D006542 3.3e-30 138.3 160 51.2
PSO782G1978 Papaver somniferum HOM05D005351 ORTHO05D006542 2.8e-29 135.2 494 31.8
HPP92_028497 Vanilla planifolia HOM05D005351 ORTHO05D006542 3.7e-29 134.8 159 47.8
Hma1.2p1_3473F.1_g336230 Hydrangea macrophylla HOM05D005351 ORTHO05D006542 1.5e-27 129.4 102 69.6
vmacro11082 Vaccinium macrocarpon HOM05D000009 ORTHO05D006542 1.1e-25 123.2 97 68.0
Pp3c7_8580 Physcomitrium patens HOM05D005351 ORTHO05D006542 1.4e-25 122.9 1072 26.4
CiPaw.12G140800 Carya illinoinensis HOM05D005351 ORTHO05D006542 6.9e-20 104.0 136 48.5
Lsat_1_v5_gn_6_88041 Lactuca sativa HOM05D005351 ORTHO05D006542 9.1e-20 103.6 233 38.6
AagrBONN_evm.TU.Sc2ySwM_368.1723 Anthoceros agrestis HOM05D005351 ORTHO05D006542 2.0e-19 102.4 128 55.5
Dinv10361 Davidia involucrata HOM05D005351 ORTHO05D006542 7.7e-19 100.5 73 64.4
Cre09.g388430 Chlamydomonas reinhardtii HOM05D005351 ORTHO05D006542 1.8e-12 79.3 188 31.9
Peaxi162Scf00018g00154 Petunia axillaris HOM05D005351 ORTHO05D006542 1.8e-12 79.3 59 69.5
Solyc10g005860.3 Solanum lycopersicum HOM05D005351 ORTHO05D006542 2.4e-12 79.0 59 69.5
Oeu017995.1 Olea europaea HOM05D005351 ORTHO05D006542 1.7e-10 72.8 234 32.1
HPP92_028499 Vanilla planifolia HOM05D005351 ORTHO05D006542 6.5e-10 70.9 90 55.6
Cc00_g23250 Coffea canephora HOM05D000874 ORTHO05D001049 4.0e-07 61.6 40 60.0
MCO09G310 Micromonas commoda HOM05D005351 ORTHO05D006542 4.0e-07 61.6 173 29.5


User provided reference genes

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