Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g02028 Nelumbo nucifera HOM05D003592 ORTHO05D004208 1.7e-66 255.8 122 100.0
TAR629G1675 Trochodendron aralioides HOM05D003592 ORTHO05D004208 1.5e-33 146.4 97 71.1
CSS0031198 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 8.4e-29 130.6 89 69.7
Nn3g19269 Nelumbo nucifera HOM05D003592 ORTHO05D004208 1.4e-28 129.8 93 68.8
CSS0018534 Camellia sinensis var. sinensis HOM05D003592 ORTHO05D004208 1.9e-28 129.4 89 65.2
vmacro06490 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 1.9e-28 129.4 89 69.7
Dinv29178 Davidia involucrata HOM05D003592 ORTHO05D004208 4.6e-27 124.8 89 67.4
MBI04_g21153_MAGBIO Magnolia biondii HOM05D003592 ORTHO05D004208 1.0e-26 123.6 95 60.0
Manes.09G123900 Manihot esculenta HOM05D003592 ORTHO05D004208 1.3e-26 123.2 90 66.7
Rhsim03G0219900 Rhododendron simsii HOM05D003592 ORTHO05D004208 2.3e-26 122.5 89 66.3
Dinv17270 Davidia involucrata HOM05D003592 ORTHO05D004208 8.7e-26 120.6 89 64.0
Potri.013G081700 Populus trichocarpa HOM05D003592 ORTHO05D004208 8.7e-26 120.6 102 56.9
GSVIVG01024455001 Vitis vinifera HOM05D003592 ORTHO05D004208 1.9e-25 119.4 89 61.8
Actinidia28268 Actinidia chinensis HOM05D003592 ORTHO05D004208 2.5e-25 119.0 98 61.2
Atru.chr12.2033 Acer truncatum HOM05D003592 ORTHO05D004208 5.6e-25 117.9 117 52.1
Actinidia08730 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.3e-24 116.7 89 67.4
CANSAT21G0974 Cannabis sativa HOM05D003592 ORTHO05D004208 1.3e-24 116.7 104 55.8
Manes.08G164900 Manihot esculenta HOM05D003592 ORTHO05D004208 1.6e-24 116.3 118 51.7
Haze_00584 Corylus avellana HOM05D003592 ORTHO05D004208 1.8e-23 112.8 90 62.2
Hma1.2p1_1235F.1_g269160 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 1.8e-23 112.8 89 59.6
Prupe.2G323400 Prunus persica HOM05D003592 ORTHO05D004208 1.8e-23 112.8 119 52.9
CiPaw.05G236400 Carya illinoinensis HOM05D003592 ORTHO05D004208 2.4e-23 112.5 90 64.4
Actinidia34296 Actinidia chinensis HOM05D003592 ORTHO05D004208 4.0e-23 111.7 89 64.0
Sabra13G0071400 Salix brachista HOM05D003592 ORTHO05D004208 4.0e-23 111.7 106 52.8
PGSC0003DMG400000541 Solanum tuberosum HOM05D003592 ORTHO05D004208 4.0e-23 111.7 93 60.2
Thecc.05G207700 Theobroma cacao HOM05D003592 ORTHO05D004208 9.0e-23 110.5 123 49.6
Sed0022386 Sechium edule HOM05D003592 ORTHO05D004208 2.0e-22 109.4 117 50.4
AUR62005925 Chenopodium quinoa HOM05D003592 ORTHO05D004208 2.6e-22 109.0 89 58.4
MD07G1305300 Malus domestica HOM05D003592 ORTHO05D004208 2.6e-22 109.0 89 59.6
Nitab4.5_0000021g0300 Nicotiana tabacum HOM05D003592 ORTHO05D004208 3.4e-22 108.6 110 53.6
AUR62018884 Chenopodium quinoa HOM05D003592 ORTHO05D004208 4.4e-22 108.2 89 58.4
Nitab4.5_0002302g0040 Nicotiana tabacum HOM05D003592 ORTHO05D004208 4.4e-22 108.2 93 59.1
MELO3C017620.2 Cucumis melo HOM05D003592 ORTHO05D004208 7.6e-22 107.5 91 56.0
Migut.F00955 Erythranthe guttata HOM05D003592 ORTHO05D004208 9.9e-22 107.1 97 54.6
Lsat_1_v5_gn_0_9420 Lactuca sativa HOM05D003592 ORTHO05D004208 9.9e-22 107.1 104 52.9
COL.COLO4_08909 Corchorus olitorius HOM05D003592 ORTHO05D004208 1.3e-21 106.7 120 49.2
Sopen03g027580 Solanum pennellii HOM05D003592 ORTHO05D004208 1.7e-21 106.3 90 60.0
Hma1.2p1_0758F.1_g213540 Hydrangea macrophylla HOM05D003592 ORTHO05D004208 2.9e-21 105.5 96 53.1
Solyc03g096840.4 Solanum lycopersicum HOM05D003592 ORTHO05D004208 3.8e-21 105.1 87 60.9
CsaV3_4G004470 Cucumis sativus L. HOM05D003592 ORTHO05D004208 6.4e-21 104.4 101 54.5
Actinidia18695 Actinidia chinensis HOM05D003592 ORTHO05D004208 1.1e-20 103.6 87 58.6
Ah.04g157330 Amaranthus hybridus HOM05D003592 ORTHO05D004208 2.4e-20 102.4 87 57.5
Ca_24466_v3 Cicer arietinum L. HOM05D003592 ORTHO05D004208 2.4e-20 102.4 119 47.9
Duzib177G0010 Durio zibethinus HOM05D003592 ORTHO05D004208 2.4e-20 102.4 96 58.3
Sc13g0010720 Simmondsia chinensis HOM05D003592 ORTHO05D004208 2.4e-20 102.4 98 58.2
EL10Ac3g05109 Beta vulgaris HOM05D003592 ORTHO05D004208 3.2e-20 102.1 93 59.1
Duzib106G0206 Durio zibethinus HOM05D003592 ORTHO05D004208 4.2e-20 101.7 123 47.2
MSTRG.8553 Avicennia marina HOM05D003592 ORTHO05D004208 7.1e-20 100.9 99 52.5
CAN.G303.68 Capsicum annuum HOM05D003592 ORTHO05D004208 7.1e-20 100.9 93 53.8
Ciclev10013115m.g Citrus clementina HOM05D003592 ORTHO05D004208 7.1e-20 100.9 120 48.3
Sed0007086 Sechium edule HOM05D003592 ORTHO05D004208 7.1e-20 100.9 119 50.4
Peaxi162Scf00815g00235 Petunia axillaris HOM05D003592 ORTHO05D004208 9.3e-20 100.5 104 51.0
TWI32G0722 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 9.3e-20 100.5 92 58.7
Eucgr.A02954 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.6e-19 99.8 111 45.0
Eucgr.L03660 Eucalyptus grandis HOM05D003592 ORTHO05D004208 1.6e-19 99.8 89 53.9
Glyma.11G013200 Glycine max HOM05D003592 ORTHO05D004208 2.1e-19 99.4 119 47.9
FAN03G1827 Fragaria x ananassa HOM05D003592 ORTHO05D004208 2.7e-19 99.0 108 48.1
TWI34G2026 Tripterygium wilfordii HOM05D003592 ORTHO05D004208 2.7e-19 99.0 108 54.6
Oeu063742.2 Olea europaea HOM05D003592 ORTHO05D004208 3.5e-19 98.6 88 55.7
RcHm_v2.0_Chr1g0383761 Rosa chinensis HOM05D003592 ORTHO05D004208 3.5e-19 98.6 89 55.1
DCAR_010550 Daucus carota HOM05D003592 ORTHO05D004208 4.6e-19 98.2 108 48.1
FAN10G0119 Fragaria x ananassa HOM05D003592 ORTHO05D004208 4.6e-19 98.2 108 48.1
FAN10G2200 Fragaria x ananassa HOM05D003592 ORTHO05D004208 4.6e-19 98.2 108 48.1
Glyma.01G230200 Glycine max HOM05D003592 ORTHO05D004208 4.6e-19 98.2 105 51.4
Gohir.A02G139000 Gossypium hirsutum HOM05D003592 ORTHO05D004208 4.6e-19 98.2 90 58.9
Gohir.D03G049600 Gossypium hirsutum HOM05D003592 ORTHO05D004208 4.6e-19 98.2 90 58.9
Gorai.003G051000 Gossypium raimondii HOM05D003592 ORTHO05D004208 4.6e-19 98.2 90 58.9
FAN01G2998 Fragaria x ananassa HOM05D003592 ORTHO05D004208 6.0e-19 97.8 110 49.1
Peaxi162Scf01650g00057 Petunia axillaris HOM05D003592 ORTHO05D004208 1.0e-18 97.1 96 52.1
MSTRG.14 Avicennia marina HOM05D003592 ORTHO05D004208 1.7e-18 96.3 90 53.3
Sopen06g029230 Solanum pennellii HOM05D003592 ORTHO05D004208 1.7e-18 96.3 106 50.9
FvH4_7g33540 Fragaria vesca HOM05D003592 ORTHO05D004208 2.3e-18 95.9 108 47.2
Sc19g0000280 Simmondsia chinensis HOM05D003592 ORTHO05D004208 2.3e-18 95.9 88 56.8
Medtr5g008210 Medicago truncatula HOM05D003592 ORTHO05D004208 3.9e-18 95.1 96 54.2
Ah.13g071180 Amaranthus hybridus HOM05D003592 ORTHO05D004208 5.1e-18 94.7 89 53.9
ClCG07G017260 Citrullus lanatus HOM05D003592 ORTHO05D004208 5.1e-18 94.7 80 60.0
TPR.G37953 Trifolium pratense HOM05D003592 ORTHO05D004208 5.1e-18 94.7 104 48.1
Peaxi162Scf00133g00111 Petunia axillaris HOM05D003592 ORTHO05D004208 8.7e-18 94.0 93 47.3
PGSC0003DMG400026933 Solanum tuberosum HOM05D003592 ORTHO05D004208 8.7e-18 94.0 105 45.7
LjContig00222g0008170 Lotus japonicus HOM05D003592 ORTHO05D004208 1.1e-17 93.6 99 51.5
PGSC0003DMG400027031 Solanum tuberosum HOM05D003592 ORTHO05D004208 1.1e-17 93.6 106 48.1
Phvul.002G036900 Phaseolus vulgaris HOM05D003592 ORTHO05D004208 1.5e-17 93.2 126 42.1
Psat2g187520 Pisum sativum HOM05D003592 ORTHO05D004208 1.5e-17 93.2 90 56.7
Solyc06g072845.1 Solanum lycopersicum HOM05D003592 ORTHO05D004208 1.5e-17 93.2 106 50.0
PGR042G3489 Punica granatum HOM05D003592 ORTHO05D004208 1.9e-17 92.8 93 51.6
vmacro10180 Vaccinium macrocarpon HOM05D003592 ORTHO05D004208 2.5e-17 92.4 79 55.7
SGA_v2.0_scaffold18G08501 Striga asiatica HOM05D003592 ORTHO05D004208 4.3e-17 91.7 91 51.6
Cpa.g.sc39.41 Carica papaya HOM05D003592 ORTHO05D004208 5.6e-17 91.3 74 58.1
Aqoxy161s001 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 7.3e-17 90.9 95 47.4
Aqoxy161s002 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 7.3e-17 90.9 95 47.4
Aqoxy3G02065 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 7.3e-17 90.9 95 47.4
Aqoxy3G02066 Aquilegia oxysepala HOM05D003592 ORTHO05D004208 7.3e-17 90.9 95 47.4
PSO063G2386 Papaver somniferum HOM05D003592 ORTHO05D004208 7.3e-17 90.9 93 48.4
Rhsim09G0211800 Rhododendron simsii HOM05D003592 ORTHO05D004208 7.3e-17 90.9 59 69.5
QL09p026459 Quercus lobata HOM05D003592 ORTHO05D004208 1.3e-16 90.1 119 42.9
VMungo1215G0435 Vigna mungo HOM05D003592 ORTHO05D004208 1.3e-16 90.1 119 42.9
Migut.F00107 Erythranthe guttata HOM05D003592 ORTHO05D004208 1.6e-16 89.7 88 52.3
arahy.Tifrunner.gnm1.ann1.F45BIC Arachis hypogaea HOM05D003592 ORTHO05D004208 2.1e-16 89.4 117 44.4
arahy.Tifrunner.gnm1.ann1.I6057L Arachis hypogaea HOM05D003592 ORTHO05D004208 2.1e-16 89.4 117 44.4
Duzib128G1398 Durio zibethinus HOM05D003592 ORTHO05D004208 3.6e-16 88.6 95 53.7
Actinidia08732 Actinidia chinensis HOM05D003592 ORTHO05D004208 4.8e-16 88.2 82 57.3
MBI04_g29825_MAGBIO Magnolia biondii HOM05D000463 ORTHO05D013433 6.2e-16 87.8 54 72.2
Nitab4.5_0006270g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 8.1e-16 87.4 106 46.2
Hund21085 Selenicereus undatus HOM05D003592 ORTHO05D004208 1.1e-15 87.0 66 62.1
CiPaw.06G020500 Carya illinoinensis HOM05D003592 ORTHO05D004208 1.4e-15 86.7 91 48.4
SalBow2G2852 Salvia bowleyana HOM05D003592 ORTHO05D004208 1.8e-15 86.3 89 48.3
MSTRG.26939 Avicennia marina HOM05D003592 ORTHO05D004208 3.1e-15 85.5 93 47.3
Oeu061060.1 Olea europaea HOM05D003592 ORTHO05D004208 4.0e-15 85.1 91 50.5
PSO170G2965 Papaver somniferum HOM05D003592 ORTHO05D004208 4.0e-15 85.1 91 45.1
SEGI_20020 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 4.0e-15 85.1 95 47.4
CDE12G0763 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 6.9e-15 84.3 86 52.3
Cc02_g00450 Coffea canephora HOM05D003592 ORTHO05D004208 9.0e-15 84.0 49 73.5
Cc05_g00720 Coffea canephora HOM05D003592 ORTHO05D004208 9.0e-15 84.0 49 73.5
Thhalv10021768m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 9.0e-15 84.0 82 47.6
Sopen06g029220 Solanum pennellii HOM05D003592 ORTHO05D004208 9.0e-15 84.0 104 46.2
CDE01G0008 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 1.2e-14 83.6 86 52.3
Solyc06g072840.3 Solanum lycopersicum HOM05D003592 ORTHO05D004208 1.2e-14 83.6 102 46.1
Peaxi162Scf00815g00250 Petunia axillaris HOM05D003592 ORTHO05D004208 1.5e-14 83.2 93 44.1
Nitab4.5_0000115g0310 Nicotiana tabacum HOM05D003592 ORTHO05D004208 2.6e-14 82.4 103 41.7
Nitab4.5_0000115g0330 Nicotiana tabacum HOM05D003592 ORTHO05D004208 4.5e-14 81.6 89 47.2
Eucgr.A02956 Eucalyptus grandis HOM05D003592 ORTHO05D004208 5.8e-14 81.3 58 63.8
HanXRQChr09g0257211 Helianthus annuus HOM05D003592 ORTHO05D004208 7.6e-14 80.9 83 47.0
A03p33220 Brassica napus HOM05D003592 ORTHO05D004208 1.3e-13 80.1 70 54.3
BraA03t12494Z Brassica rapa HOM05D003592 ORTHO05D004208 1.3e-13 80.1 70 54.3
HanXRQChr02g0041191 Helianthus annuus HOM05D003592 ORTHO05D004208 1.3e-13 80.1 85 55.3
Oeu038117.1 Olea europaea HOM05D003592 ORTHO05D004208 1.3e-13 80.1 54 63.0
SGA_v2.0_scaffold165G38224 Striga asiatica HOM05D003592 ORTHO05D004208 1.7e-13 79.7 99 45.5
AT3G03150 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 2.2e-13 79.3 64 51.6
C03p40480 Brassica napus HOM05D003592 ORTHO05D004208 2.2e-13 79.3 60 58.3
BolC3t16311H Brassica oleracea HOM05D003592 ORTHO05D004208 2.2e-13 79.3 60 58.3
BcaC04g18828 Brassica carinata HOM05D003592 ORTHO05D004208 2.9e-13 79.0 90 46.7
C09p60040 Brassica napus HOM05D003592 ORTHO05D004208 2.9e-13 79.0 90 46.7
BolC9t58839H Brassica oleracea HOM05D003592 ORTHO05D004208 2.9e-13 79.0 90 46.7
THA.LOC104827220 Tarenaya hassleriana HOM05D003592 ORTHO05D004208 2.9e-13 79.0 65 58.5
unitig_62.g23842 Utricularia gibba HOM05D003592 ORTHO05D004208 2.9e-13 79.0 50 74.0
Ah.13g071140 Amaranthus hybridus HOM05D003592 ORTHO05D004208 3.8e-13 78.6 90 51.1
Carub.0006s1535 Capsella rubella HOM05D003592 ORTHO05D004208 3.8e-13 78.6 82 43.9
Oeu055446.1 Olea europaea HOM05D003592 ORTHO05D004208 3.8e-13 78.6 84 47.6
ATR0829G020 Amborella trichopoda HOM05D003592 ORTHO05D004208 4.9e-13 78.2 63 54.0
C05p63660 Brassica napus HOM05D003592 ORTHO05D004208 4.9e-13 78.2 74 45.9
Sed0014997 Sechium edule HOM05D003592 ORTHO05D004208 4.9e-13 78.2 114 35.1
HPP92_014706 Vanilla planifolia HOM05D003592 ORTHO05D004208 6.4e-13 77.8 117 41.0
CDE11G0498 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 8.4e-13 77.4 88 50.0
SEGI_37277 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 8.4e-13 77.4 86 48.8
Aa31LG5G13630 Aethionema arabicum HOM05D003592 ORTHO05D004208 1.1e-12 77.0 79 45.6
BcaC01g04411 Brassica carinata HOM05D003592 ORTHO05D004208 1.1e-12 77.0 60 56.7
BolC5t35035H Brassica oleracea HOM05D003592 ORTHO05D004208 1.1e-12 77.0 73 49.3
MD01G1233000 Malus domestica HOM05D003592 ORTHO05D004208 1.1e-12 77.0 48 68.8
Nitab4.5_0003012g0010 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.1e-12 77.0 88 43.2
CARHR196060 Cardamine hirsuta HOM05D003592 ORTHO05D004208 1.4e-12 76.6 83 45.8
Cfa015910 Carpinus fangiana HOM05D003592 ORTHO05D004208 1.4e-12 76.6 80 48.8
Hund09766 Selenicereus undatus HOM05D003592 ORTHO05D004208 1.4e-12 76.6 75 50.7
A05p44040 Brassica napus HOM05D003592 ORTHO05D004208 1.9e-12 76.3 62 56.5
BraSC90t46707Z Brassica rapa HOM05D003592 ORTHO05D004208 1.9e-12 76.3 62 56.5
AUR62028136 Chenopodium quinoa HOM05D003592 ORTHO05D004208 1.9e-12 76.3 41 78.0
Sp3g02190 Schrenkiella parvula HOM05D003592 ORTHO05D004208 1.9e-12 76.3 47 68.1
AL3G12760 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 2.4e-12 75.9 63 50.8
BcaC05g30524 Brassica carinata HOM05D003592 ORTHO05D004208 2.4e-12 75.9 57 56.1
CARHR077170 Cardamine hirsuta HOM05D003592 ORTHO05D004208 2.4e-12 75.9 78 43.6
Carub.0003s0230 Capsella rubella HOM05D003592 ORTHO05D004208 4.2e-12 75.1 54 63.0
HPP92_020881 Vanilla planifolia HOM05D003592 ORTHO05D004208 4.2e-12 75.1 90 45.6
HPP92_020885 Vanilla planifolia HOM05D003592 ORTHO05D004208 4.2e-12 75.1 90 45.6
BcaB04g19374 Brassica carinata HOM05D003592 ORTHO05D004208 5.4e-12 74.7 45 66.7
A10p22230 Brassica napus HOM05D003592 ORTHO05D004208 7.1e-12 74.3 59 55.9
BraA10t44282Z Brassica rapa HOM05D003592 ORTHO05D004208 7.1e-12 74.3 59 55.9
AT5G17165 Arabidopsis thaliana HOM05D003592 ORTHO05D004208 9.3e-12 73.9 47 61.7
ECA232G0247 Erigeron canadensis HOM05D003592 ORTHO05D004208 1.2e-11 73.6 58 62.1
BcaB08g36801 Brassica carinata HOM05D003592 ORTHO05D004208 2.1e-11 72.8 55 56.4
Zm00001eb430170 Zea mays HOM05D003592 ORTHO05D004208 2.7e-11 72.4 105 41.0
TAR375G0874 Trochodendron aralioides HOM05D003592 ORTHO05D004208 3.5e-11 72.0 61 57.4
Os04g0598000 Oryza sativa ssp. japonica HOM05D003592 ORTHO05D004208 6.0e-11 71.2 89 47.2
AL6G28210 Arabidopsis lyrata HOM05D003592 ORTHO05D004208 1.8e-10 69.7 47 59.6
Thhalv10017419m.g Eutrema salsugineum HOM05D003592 ORTHO05D004208 3.0e-10 68.9 90 37.8
Sp6g27060 Schrenkiella parvula HOM05D003592 ORTHO05D004208 3.0e-10 68.9 83 43.4
ClCG01G004940 Citrullus lanatus HOM05D003592 ORTHO05D004208 6.7e-10 67.8 57 56.1
HPP92_014744 Vanilla planifolia HOM05D003592 ORTHO05D004208 1.5e-09 66.6 71 47.9
CDE02G0247 Ceratophyllum demersum HOM05D003592 ORTHO05D004208 5.6e-09 64.7 57 52.6
Eucgr.K00100 Eucalyptus grandis HOM05D003592 ORTHO05D004208 9.6e-09 63.9 43 65.1
PGR142G3032 Punica granatum HOM05D003592 ORTHO05D004208 1.6e-08 63.2 46 58.7
MELO3C005442.2 Cucumis melo HOM05D003592 ORTHO05D004208 2.8e-08 62.4 46 56.5
CsaV3_5G005170 Cucumis sativus L. HOM05D003592 ORTHO05D004208 1.1e-07 60.5 46 54.3
Nitab4.5_0000750g0030 Nicotiana tabacum HOM05D003592 ORTHO05D004208 1.1e-07 60.5 54 55.6
Sed0022343 Sechium edule HOM05D003592 ORTHO05D004208 3.1e-07 58.9 81 38.3
unitig_0.g1634 Utricularia gibba HOM05D003592 ORTHO05D004208 6.9e-07 57.8 94 38.3
SEGI_16015 Sequoiadendron giganteum HOM05D003592 ORTHO05D004208 2.6e-06 55.8 51 49.0


User provided reference genes

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