Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g02014 Nelumbo nucifera HOM05D000071 ORTHO05D000029 1.9e-36 155.6 96 100.0
Hma1.2p1_0142F.1_g064260 Hydrangea macrophylla HOM05D000071 ORTHO05D000029 2.6e-09 65.5 54 55.6
GSVIVG01028773001 Vitis vinifera HOM05D000071 ORTHO05D000029 2.6e-09 65.5 49 63.3
Hma1.2p1_0148F.1_g066050 Hydrangea macrophylla HOM05D003241 ORTHO05D003812 3.4e-09 65.1 55 54.5
GSVIVG01028764001 Vitis vinifera HOM05D000071 ORTHO05D000029 4.4e-09 64.7 57 56.1
GSVIVG01018682001 Vitis vinifera HOM05D000071 ORTHO05D000029 9.9e-09 63.5 49 59.2
CAN.G248.26 Capsicum annuum HOM05D000071 ORTHO05D000029 1.3e-08 63.2 53 54.7
Lsat_1_v5_gn_6_45060 Lactuca sativa HOM05D000071 ORTHO05D000029 2.2e-08 62.4 50 54.0
Lsat_1_v5_gn_6_45200 Lactuca sativa HOM05D000071 ORTHO05D000029 2.9e-08 62.0 50 54.0
Migut.N02353 Erythranthe guttata HOM05D000071 ORTHO05D000029 3.8e-08 61.6 62 51.6
Gohir.A05G394800 Gossypium hirsutum HOM05D000071 ORTHO05D000029 3.8e-08 61.6 65 49.2
Lsat_1_v5_gn_6_43080 Lactuca sativa HOM05D000071 ORTHO05D000029 3.8e-08 61.6 50 54.0
GSVIVG01018692001 Vitis vinifera HOM05D000071 ORTHO05D000029 3.8e-08 61.6 49 61.2
CAN.G248.28 Capsicum annuum HOM05D000071 ORTHO05D000029 4.9e-08 61.2 53 54.7
Dinv28358 Davidia involucrata HOM05D000071 ORTHO05D000029 4.9e-08 61.2 60 46.7
CAN.G248.29 Capsicum annuum HOM05D000071 ORTHO05D000029 6.4e-08 60.8 52 53.8
Gohir.D11G074100 Gossypium hirsutum HOM05D000071 ORTHO05D000029 6.4e-08 60.8 67 50.7
Gorai.007G079500 Gossypium raimondii HOM05D000071 ORTHO05D000029 6.4e-08 60.8 67 50.7
CANSAT11G1634 Cannabis sativa HOM05D000071 ORTHO05D000029 8.4e-08 60.5 48 50.0
Lsat_1_v5_gn_6_42540 Lactuca sativa HOM05D000071 ORTHO05D000029 8.4e-08 60.5 55 49.1
GSVIVG01024424001 Vitis vinifera HOM05D000071 ORTHO05D000029 8.4e-08 60.5 49 59.2
Dinv36144 Davidia involucrata HOM05D000071 ORTHO05D000029 1.1e-07 60.1 53 52.8
Duzib114G0642 Durio zibethinus HOM05D000071 ORTHO05D000029 1.1e-07 60.1 81 54.3
Lsat_1_v5_gn_6_42241 Lactuca sativa HOM05D000071 ORTHO05D000029 1.1e-07 60.1 55 49.1
Nitab4.5_0000512g0130 Nicotiana tabacum HOM05D000071 ORTHO05D000029 1.4e-07 59.7 53 54.7
Peaxi162Scf00132g00239 Petunia axillaris HOM05D000071 ORTHO05D000029 1.4e-07 59.7 52 50.0
Rhsim03G0185800 Rhododendron simsii HOM05D000071 ORTHO05D000029 1.4e-07 59.7 67 46.3
GSVIVG01028799001 Vitis vinifera HOM05D000071 ORTHO05D000029 1.4e-07 59.7 49 59.2
Dinv34740 Davidia involucrata HOM05D000071 ORTHO05D000029 1.9e-07 59.3 73 45.2
PGSC0003DMG400018308 Solanum tuberosum HOM05D000071 ORTHO05D000029 1.9e-07 59.3 48 54.2
SGA_v2.0_scaffold83G26406 Striga asiatica HOM05D000071 ORTHO05D000029 1.9e-07 59.3 68 48.5
Migut.N02336 Erythranthe guttata HOM05D000071 ORTHO05D000029 2.4e-07 58.9 57 50.9
Peaxi162Scf00023g00085 Petunia axillaris HOM05D000071 ORTHO05D000029 2.4e-07 58.9 48 56.2
Thecc.10G091700 Theobroma cacao HOM05D000071 ORTHO05D000029 2.4e-07 58.9 52 57.7
Lsat_1_v5_gn_6_44620 Lactuca sativa HOM05D000071 ORTHO05D000029 3.2e-07 58.5 49 53.1
Oeu022000.1 Olea europaea HOM05D000071 ORTHO05D000029 3.2e-07 58.5 44 59.1
Prupe.2G155100 Prunus persica HOM05D000071 ORTHO05D000029 3.2e-07 58.5 60 55.0
Rhsim03G0185600 Rhododendron simsii HOM05D000071 ORTHO05D000029 3.2e-07 58.5 56 50.0
CSS0016951 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 4.2e-07 58.2 62 48.4
Ciclev10007014m.g Citrus clementina HOM05D000071 ORTHO05D000029 4.2e-07 58.2 77 40.3
Oeu059691.1 Olea europaea HOM05D000071 ORTHO05D000029 4.2e-07 58.2 62 50.0
Sabra12G0023700 Salix brachista HOM05D000071 ORTHO05D000029 4.2e-07 58.2 52 48.1
CAN.G280.13 Capsicum annuum HOM05D000071 ORTHO05D000029 5.4e-07 57.8 79 38.0
Ciclev10007021m.g Citrus clementina HOM05D000071 ORTHO05D000029 5.4e-07 57.8 48 54.2
Lsat_1_v5_gn_6_45160 Lactuca sativa HOM05D000071 ORTHO05D000029 5.4e-07 57.8 48 54.2
Prupe.2G168700 Prunus persica HOM05D000071 ORTHO05D000029 5.4e-07 57.8 48 58.3
QL05p086603 Quercus lobata HOM05D000071 ORTHO05D000029 5.4e-07 57.8 68 42.6
QL09p011709 Quercus lobata HOM05D000071 ORTHO05D000029 5.4e-07 57.8 56 44.6
Dinv36141 Davidia involucrata HOM05D000071 ORTHO05D000029 7.1e-07 57.4 50 54.0
Gohir.A11G070200 Gossypium hirsutum HOM05D000071 ORTHO05D000029 7.1e-07 57.4 64 50.0
Oeu005944.1 Olea europaea HOM05D000071 ORTHO05D000029 7.1e-07 57.4 46 56.5
CSS0038152 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 9.3e-07 57.0 53 52.8
Lsat_1_v5_gn_2_39061 Lactuca sativa HOM05D000071 ORTHO05D000029 9.3e-07 57.0 64 42.2
SGA_v2.0_scaffold295G47531 Striga asiatica HOM05D000071 ORTHO05D000029 9.3e-07 57.0 53 52.8
SGA_v2.0_scaffold439G51648 Striga asiatica HOM05D000071 ORTHO05D000029 9.3e-07 57.0 59 50.8
vmacro10345 Vaccinium macrocarpon HOM05D000071 ORTHO05D000029 9.3e-07 57.0 50 56.0
Ciclev10027645m.g Citrus clementina HOM05D000071 ORTHO05D000029 1.2e-06 56.6 49 51.0
Dinv03601 Davidia involucrata HOM05D000071 ORTHO05D000029 1.2e-06 56.6 48 54.2
Dinv32117 Davidia involucrata HOM05D000071 ORTHO05D000029 1.2e-06 56.6 56 50.0
Duzib114G0006 Durio zibethinus HOM05D000071 ORTHO05D000029 1.2e-06 56.6 53 54.7
Duzib133G0379 Durio zibethinus HOM05D000071 ORTHO05D000029 1.2e-06 56.6 50 56.0
Gorai.012G024000 Gossypium raimondii HOM05D000071 ORTHO05D000029 1.2e-06 56.6 65 46.2
HanXRQChr07g0202571 Helianthus annuus HOM05D000071 ORTHO05D000029 1.2e-06 56.6 48 58.3
HanXRQChr07g0202631 Helianthus annuus HOM05D000071 ORTHO05D000029 1.2e-06 56.6 48 58.3
Lsat_1_v5_gn_6_49060 Lactuca sativa HOM05D000071 ORTHO05D000029 1.2e-06 56.6 56 46.4
PSO210G4457 Papaver somniferum HOM05D000071 ORTHO05D000029 1.2e-06 56.6 64 43.8
Rhsim03G0184700 Rhododendron simsii HOM05D000071 ORTHO05D000029 1.2e-06 56.6 54 51.9
Sed0025272 Sechium edule HOM05D000071 ORTHO05D000029 1.2e-06 56.6 54 53.7
PGSC0003DMG400018385 Solanum tuberosum HOM05D000071 ORTHO05D000029 1.2e-06 56.6 48 52.1
vmacro06850 Vaccinium macrocarpon HOM05D000071 ORTHO05D000029 1.2e-06 56.6 56 51.8
arahy.Tifrunner.gnm1.ann1.HLJC29 Arachis hypogaea HOM05D000071 ORTHO05D000029 1.6e-06 56.2 83 41.0
CANSAT56G4228 Cannabis sativa HOM05D000071 ORTHO05D000029 1.6e-06 56.2 72 41.7
Ciclev10004252m.g Citrus clementina HOM05D000071 ORTHO05D000029 1.6e-06 56.2 49 51.0
CSS0041720 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 2.1e-06 55.8 53 50.9
Ciclev10010397m.g Citrus clementina HOM05D000071 ORTHO05D000029 2.1e-06 55.8 71 40.8
Duzib174G0003 Durio zibethinus HOM05D000071 ORTHO05D000029 2.1e-06 55.8 50 56.0
Gohir.D04G020250 Gossypium hirsutum HOM05D000071 ORTHO05D000029 2.1e-06 55.8 57 50.9
Lsat_1_v5_gn_6_43160 Lactuca sativa HOM05D000071 ORTHO05D000029 2.1e-06 55.8 44 54.5
Prupe.2G168400 Prunus persica HOM05D000071 ORTHO05D000029 2.1e-06 55.8 66 43.9
Prupe.2G169500 Prunus persica HOM05D000071 ORTHO05D000029 2.1e-06 55.8 49 53.1
QL05p086426 Quercus lobata HOM05D000071 ORTHO05D000029 2.1e-06 55.8 48 54.2
QL09p011737 Quercus lobata HOM05D000071 ORTHO05D000029 2.1e-06 55.8 73 42.5
Rhsim03G0157000 Rhododendron simsii HOM05D000071 ORTHO05D000029 2.1e-06 55.8 47 57.4
Sed0019536 Sechium edule HOM05D000071 ORTHO05D000029 2.1e-06 55.8 47 61.7
Sopen07g028050 Solanum pennellii HOM05D000071 ORTHO05D000029 2.1e-06 55.8 48 50.0
CANSAT11G0148 Cannabis sativa HOM05D000071 ORTHO05D000029 2.7e-06 55.5 64 40.6
CANSAT11G2454 Cannabis sativa HOM05D000071 ORTHO05D000029 2.7e-06 55.5 48 54.2
Migut.N02331 Erythranthe guttata HOM05D000071 ORTHO05D000029 2.7e-06 55.5 47 53.2
Lsat_1_v5_gn_6_44800 Lactuca sativa HOM05D000071 ORTHO05D000029 2.7e-06 55.5 49 49.0
Medtr0087s0070 Medicago truncatula HOM05D000071 ORTHO05D000029 2.7e-06 55.5 49 55.1
Prupe.2G078100 Prunus persica HOM05D000071 ORTHO05D000029 2.7e-06 55.5 52 51.9
Prupe.2G078600 Prunus persica HOM05D000071 ORTHO05D000029 2.7e-06 55.5 52 51.9
Prupe.2G167600 Prunus persica HOM05D000071 ORTHO05D000029 2.7e-06 55.5 51 52.9
Prupe.2G168800 Prunus persica HOM05D000071 ORTHO05D000029 2.7e-06 55.5 48 54.2
Prupe.2G169100 Prunus persica HOM05D000071 ORTHO05D000029 2.7e-06 55.5 66 43.9
Atru.chr1.3012 Acer truncatum HOM05D000071 ORTHO05D000029 3.5e-06 55.1 40 62.5
CSS0008133 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 3.5e-06 55.1 44 59.1
Migut.N02352 Erythranthe guttata HOM05D000071 ORTHO05D000029 3.5e-06 55.1 48 54.2
Gorai.007G337300 Gossypium raimondii HOM05D000071 ORTHO05D000029 3.5e-06 55.1 68 47.1
Lalb_Chr02g0158661 Lupinus albus HOM05D000071 ORTHO05D000029 3.5e-06 55.1 64 42.2
Potri.012G034600 Populus trichocarpa HOM05D000071 ORTHO05D000029 3.5e-06 55.1 52 46.2
Prupe.2G166100 Prunus persica HOM05D000071 ORTHO05D000029 3.5e-06 55.1 48 54.2
Prupe.2G169200 Prunus persica HOM05D000071 ORTHO05D000029 3.5e-06 55.1 48 56.2
Rhsim03G0186100 Rhododendron simsii HOM05D000071 ORTHO05D000029 3.5e-06 55.1 49 53.1
arahy.Tifrunner.gnm1.ann1.6DA5XH Arachis hypogaea HOM05D000071 ORTHO05D000029 4.6e-06 54.7 50 52.0
arahy.Tifrunner.gnm1.ann1.SDR89X Arachis hypogaea HOM05D000071 ORTHO05D000029 4.6e-06 54.7 50 52.0
CANSAT11G1134 Cannabis sativa HOM05D000071 ORTHO05D000029 4.6e-06 54.7 48 54.2
Ciclev10017769m.g Citrus clementina HOM05D000071 ORTHO05D000029 4.6e-06 54.7 44 56.8
Duzib133G0880 Durio zibethinus HOM05D000071 ORTHO05D000029 4.6e-06 54.7 51 54.9
Duzib133G1006 Durio zibethinus HOM05D000071 ORTHO05D000029 4.6e-06 54.7 56 50.0
ECA238G3902 Erigeron canadensis HOM05D000071 ORTHO05D000029 4.6e-06 54.7 50 54.0
Lsat_1_v5_gn_5_30961 Lactuca sativa HOM05D000071 ORTHO05D000029 4.6e-06 54.7 43 58.1
Lsat_1_v5_gn_6_49001 Lactuca sativa HOM05D000071 ORTHO05D000029 4.6e-06 54.7 62 48.4
MD14G1186300 Malus domestica HOM05D000071 ORTHO05D000029 4.6e-06 54.7 49 53.1
Rhsim09G0139300 Rhododendron simsii HOM05D000071 ORTHO05D000029 4.6e-06 54.7 48 56.2
SGA_v2.0_scaffold83G26399 Striga asiatica HOM05D000071 ORTHO05D000029 4.6e-06 54.7 48 54.2
TAR636G2949 Trochodendron aralioides HOM05D000071 ORTHO05D000029 4.6e-06 54.7 57 49.1
Ciclev10004253m.g Citrus clementina HOM05D000071 ORTHO05D000029 6.0e-06 54.3 49 51.0
Ciclev10006889m.g Citrus clementina HOM05D000071 ORTHO05D000029 6.0e-06 54.3 49 51.0
Dinv36138 Davidia involucrata HOM05D000071 ORTHO05D000029 6.0e-06 54.3 48 52.1
Dinv36139 Davidia involucrata HOM05D000071 ORTHO05D000029 6.0e-06 54.3 48 52.1
Duzib114G0166 Durio zibethinus HOM05D000071 ORTHO05D000029 6.0e-06 54.3 51 47.1
FvH4_7g14070 Fragaria vesca HOM05D000071 ORTHO05D000029 6.0e-06 54.3 48 54.2
FvH4_7g14090 Fragaria vesca HOM05D000071 ORTHO05D000029 6.0e-06 54.3 48 54.2
Lsat_1_v5_gn_6_51580 Lactuca sativa HOM05D000071 ORTHO05D000029 6.0e-06 54.3 64 46.9
Oeu005947.1 Olea europaea HOM05D000071 ORTHO05D000029 6.0e-06 54.3 46 54.3
Prupe.2G171500 Prunus persica HOM05D000071 ORTHO05D000029 6.0e-06 54.3 49 53.1
Prupe.2G172300 Prunus persica HOM05D000071 ORTHO05D000029 6.0e-06 54.3 48 56.2
RcHm_v2.0_Chr1g0352901 Rosa chinensis HOM05D000071 ORTHO05D000029 6.0e-06 54.3 48 54.2
RcHm_v2.0_Chr1g0354701 Rosa chinensis HOM05D000071 ORTHO05D000029 6.0e-06 54.3 48 54.2
RcHm_v2.0_Chr1g0354751 Rosa chinensis HOM05D000071 ORTHO05D000029 6.0e-06 54.3 48 54.2
vmacro22574 Vaccinium macrocarpon HOM05D000071 ORTHO05D000029 6.0e-06 54.3 48 52.1
CSS0041362 Camellia sinensis var. sinensis HOM05D000071 ORTHO05D000029 7.8e-06 53.9 53 52.8
Ciclev10006774m.g Citrus clementina HOM05D000071 ORTHO05D000029 7.8e-06 53.9 49 51.0
Ciclev10007027m.g Citrus clementina HOM05D000071 ORTHO05D000029 7.8e-06 53.9 49 51.0
Dinv07788 Davidia involucrata HOM05D000071 ORTHO05D000029 7.8e-06 53.9 43 55.8
Dinv36145 Davidia involucrata HOM05D000071 ORTHO05D000029 7.8e-06 53.9 65 47.7
Migut.N02354 Erythranthe guttata HOM05D000071 ORTHO05D000029 7.8e-06 53.9 47 57.4
Hma1.2p1_0142F.1_g064270 Hydrangea macrophylla HOM05D000071 ORTHO05D000029 7.8e-06 53.9 51 52.9
Lsat_1_v5_gn_5_31140 Lactuca sativa HOM05D000071 ORTHO05D000029 7.8e-06 53.9 40 60.0
MD14G1186700 Malus domestica HOM05D000071 ORTHO05D000029 7.8e-06 53.9 51 52.9
QL05p086271 Quercus lobata HOM05D000071 ORTHO05D000029 7.8e-06 53.9 49 55.1
Rhsim05G0176800 Rhododendron simsii HOM05D000071 ORTHO05D000029 7.8e-06 53.9 49 53.1
RcHm_v2.0_Chr1g0352861 Rosa chinensis HOM05D000071 ORTHO05D000029 7.8e-06 53.9 48 54.2
RcHm_v2.0_Chr1g0354881 Rosa chinensis HOM05D000071 ORTHO05D000029 7.8e-06 53.9 48 54.2
SGA_v2.0_scaffold439G51641 Striga asiatica HOM05D000071 ORTHO05D000029 7.8e-06 53.9 52 51.9
vmacro10343 Vaccinium macrocarpon HOM05D000071 ORTHO05D000029 7.8e-06 53.9 44 59.1


User provided reference genes

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