Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g02011 Nelumbo nucifera HOM05D002799 ORTHO05D008889 2.8e-100 368.6 186 100.0
TAR629G0193 Trochodendron aralioides HOM05D002799 ORTHO05D008889 4.8e-68 261.5 181 71.8
Actinidia08736 Actinidia chinensis HOM05D002799 ORTHO05D008889 9.0e-67 257.3 176 72.7
Dinv29173 Davidia involucrata HOM05D002799 ORTHO05D008889 3.4e-66 255.4 177 71.8
Manes.08G164500 Manihot esculenta HOM05D002799 ORTHO05D008889 5.9e-66 254.6 178 70.8
CSS0012005 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D008889 1.0e-65 253.8 180 71.1
CSS0036576 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D008889 1.0e-65 253.8 180 71.1
Nn3g19277 Nelumbo nucifera HOM05D002799 ORTHO05D008889 5.0e-65 251.5 161 77.6
RcHm_v2.0_Chr1g0383841 Rosa chinensis HOM05D002799 ORTHO05D008889 1.2e-63 246.9 179 68.2
Thecc.04G001600 Theobroma cacao HOM05D002799 ORTHO05D008889 2.7e-63 245.7 180 68.3
CiPaw.05G237000 Carya illinoinensis HOM05D002799 ORTHO05D008889 2.3e-62 242.7 180 67.8
Haze_00591 Corylus avellana HOM05D002799 ORTHO05D008889 3.0e-62 242.3 171 71.3
Gohir.D11G175400 Gossypium hirsutum HOM05D002799 ORTHO05D008889 3.0e-62 242.3 180 67.8
Gorai.007G188000 Gossypium raimondii HOM05D002799 ORTHO05D008889 3.0e-62 242.3 180 67.8
FvH4_7g33591 Fragaria vesca HOM05D002799 ORTHO05D008889 6.7e-62 241.1 179 67.0
Prupe.2G323800 Prunus persica HOM05D002799 ORTHO05D008889 6.7e-62 241.1 180 67.8
Gohir.A11G169200 Gossypium hirsutum HOM05D002799 ORTHO05D008889 8.8e-62 240.7 180 67.2
Sabra19G0057600 Salix brachista HOM05D002799 ORTHO05D008889 8.8e-62 240.7 181 66.9
Cc05_g12950 Coffea canephora HOM05D002799 ORTHO05D008889 1.1e-61 240.4 176 68.2
DCAR_010548 Daucus carota HOM05D002799 ORTHO05D008889 1.1e-61 240.4 173 68.2
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.1e-61 240.4 179 67.0
GSVIVG01024450001 Vitis vinifera HOM05D002799 ORTHO05D008889 1.5e-61 240.0 175 66.3
FvH4_7g33580 Fragaria vesca HOM05D002799 ORTHO05D008889 2.0e-61 239.6 179 66.5
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 2.0e-61 239.6 179 67.0
Rhsim03G0220500 Rhododendron simsii HOM05D000526 ORTHO05D000956 2.5e-61 239.2 173 71.1
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 3.3e-61 238.8 179 67.0
Eucgr.K03383 Eucalyptus grandis HOM05D002799 ORTHO05D008889 4.3e-61 238.4 180 67.2
Potri.019G048200 Populus trichocarpa HOM05D002799 ORTHO05D008889 4.3e-61 238.4 174 67.8
MD07G1305700 Malus domestica HOM05D002799 ORTHO05D008889 1.3e-60 236.9 174 68.4
MELO3C005426.2 Cucumis melo HOM05D002799 ORTHO05D008889 2.2e-60 236.1 178 66.9
QL09p025834 Quercus lobata HOM05D002799 ORTHO05D008889 2.8e-60 235.7 171 69.0
Ciclev10032834m.g Citrus clementina HOM05D002799 ORTHO05D008889 3.7e-60 235.3 172 68.6
TWI60G0329 Tripterygium wilfordii HOM05D002799 ORTHO05D008889 4.8e-60 235.0 172 65.7
Atru.chr12.2012 Acer truncatum HOM05D002799 ORTHO05D008889 1.1e-59 233.8 192 62.5
Sopen10g002540 Solanum pennellii HOM05D002799 ORTHO05D008889 1.8e-59 233.0 180 65.6
Nitab4.5_0000207g0420 Nicotiana tabacum HOM05D002799 ORTHO05D008889 3.1e-59 232.3 180 65.0
PGSC0003DMG400024993 Solanum tuberosum HOM05D002799 ORTHO05D008889 5.3e-59 231.5 180 66.1
ECA236G2689 Erigeron canadensis HOM05D002799 ORTHO05D008889 1.2e-58 230.3 178 65.7
Nitab4.5_0002229g0090 Nicotiana tabacum HOM05D002799 ORTHO05D008889 1.5e-58 229.9 180 63.9
vmacro06499 Vaccinium macrocarpon HOM05D002799 ORTHO05D008889 1.5e-58 229.9 158 74.1
CAN.G1110.21 Capsicum annuum HOM05D002799 ORTHO05D008889 7.7e-58 227.6 180 65.0
CsaV3_5G005340 Cucumis sativus L. HOM05D002799 ORTHO05D008889 1.0e-57 227.3 179 64.8
Glyma.18G134600 Glycine max HOM05D002799 ORTHO05D008889 1.0e-57 227.3 177 62.1
arahy.Tifrunner.gnm1.ann1.10QB4Z Arachis hypogaea HOM05D002799 ORTHO05D008889 1.3e-57 226.9 177 64.4
Sed0001745 Sechium edule HOM05D002799 ORTHO05D008889 1.3e-57 226.9 174 66.7
Glyma.08G289900 Glycine max HOM05D002799 ORTHO05D008889 2.2e-57 226.1 177 61.6
arahy.Tifrunner.gnm1.ann1.LMI616 Arachis hypogaea HOM05D002799 ORTHO05D008889 2.9e-57 225.7 177 63.8
arahy.Tifrunner.gnm1.ann1.31RF02 Arachis hypogaea HOM05D002799 ORTHO05D008889 3.8e-57 225.3 177 63.8
arahy.Tifrunner.gnm1.ann1.B4EAVD Arachis hypogaea HOM05D002799 ORTHO05D008889 5.0e-57 224.9 177 63.8
MSTRG.17884 Avicennia marina HOM05D002799 ORTHO05D008889 5.5e-56 221.5 175 64.0
EL10Ac3g05099 Beta vulgaris HOM05D002799 ORTHO05D008889 9.4e-56 220.7 178 62.4
Medtr8g063470 Medicago truncatula HOM05D002799 ORTHO05D008889 9.4e-56 220.7 180 60.6
AUR62028150 Chenopodium quinoa HOM05D002799 ORTHO05D008889 1.2e-55 220.3 178 62.4
Migut.M01834 Erythranthe guttata HOM05D002799 ORTHO05D008889 2.7e-55 219.2 174 62.1
TPR.G670 Trifolium pratense HOM05D002799 ORTHO05D008889 4.7e-55 218.4 173 61.8
Lalb_Chr09g0335071 Lupinus albus HOM05D002799 ORTHO05D008889 7.9e-55 217.6 171 63.2
Ah.04g157280 Amaranthus hybridus HOM05D002799 ORTHO05D008889 5.1e-54 214.9 179 59.8
VMungo0251G2787 Vigna mungo HOM05D002799 ORTHO05D008889 1.1e-53 213.8 172 62.2
Lsat_1_v5_gn_5_146100 Lactuca sativa HOM05D002799 ORTHO05D008889 1.5e-53 213.4 176 60.8
Lsat_1_v5_gn_8_74380 Lactuca sativa HOM05D002799 ORTHO05D008889 1.5e-53 213.4 176 60.2
CANSAT21G1155 Cannabis sativa HOM05D002799 ORTHO05D008889 2.0e-53 213.0 170 64.7
Phvul.003G054200 Phaseolus vulgaris HOM05D002799 ORTHO05D008889 2.6e-53 212.6 177 58.8
SGA_v2.0_scaffold70G23573 Striga asiatica HOM05D002799 ORTHO05D008889 3.3e-53 212.2 171 61.4
BcaC04g23004 Brassica carinata HOM05D002799 ORTHO05D008889 4.4e-53 211.8 185 56.8
C09p13130 Brassica napus HOM05D002799 ORTHO05D008889 4.4e-53 211.8 185 56.8
unitig_746.g26651 Utricularia gibba HOM05D002799 ORTHO05D008889 7.4e-53 211.1 175 58.9
AL3G49530 Arabidopsis lyrata HOM05D002799 ORTHO05D008889 1.3e-52 210.3 182 57.7
THA.LOC104803694 Tarenaya hassleriana HOM05D002799 ORTHO05D008889 1.3e-52 210.3 182 58.2
Carub.0003s3061 Capsella rubella HOM05D002799 ORTHO05D008889 2.8e-52 209.1 185 56.8
A09p11140 Brassica napus HOM05D002799 ORTHO05D008889 4.8e-52 208.4 185 55.1
BcaB07g31750 Brassica carinata HOM05D002799 ORTHO05D008889 6.3e-52 208.0 185 56.8
Phvul.003G053900 Phaseolus vulgaris HOM05D002799 ORTHO05D008889 8.2e-52 207.6 177 58.2
BraA09t36756Z Brassica rapa HOM05D002799 ORTHO05D008889 1.8e-51 206.5 183 55.2
Duzib133G0126 Durio zibethinus HOM05D002799 ORTHO05D008889 2.4e-51 206.1 160 65.0
Aa31LG8G14030 Aethionema arabicum HOM05D002799 ORTHO05D008889 5.3e-51 204.9 171 59.6
AT2G16790 Arabidopsis thaliana HOM05D002799 ORTHO05D008889 5.3e-51 204.9 182 56.6
Lj1P1032T28 Lonicera japonica HOM05D002799 ORTHO05D008889 5.3e-51 204.9 155 67.1
Oeu053393.1 Olea europaea HOM05D002799 ORTHO05D008889 1.2e-50 203.8 156 64.7
BolC9t54208H Brassica oleracea HOM05D002799 ORTHO05D008889 1.5e-50 203.4 173 57.2
CARHR107040 Cardamine hirsuta HOM05D002799 ORTHO05D008889 1.0e-49 200.7 179 55.9
PSO717G0064 Papaver somniferum HOM05D002799 ORTHO05D008889 1.3e-49 200.3 192 58.3
Sp3g29930 Schrenkiella parvula HOM05D002799 ORTHO05D008889 1.3e-49 200.3 180 56.1
Peaxi162Scf00257g00081 Petunia axillaris HOM05D002799 ORTHO05D008889 1.7e-49 199.9 155 67.1
Lj4g0019925 Lotus japonicus HOM05D002799 ORTHO05D008889 6.5e-49 198.0 159 60.4
PSO675G5486 Papaver somniferum HOM05D002799 ORTHO05D008889 3.2e-48 195.7 192 57.3
Os06g0114650 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D008889 4.2e-48 195.3 171 57.3
Thhalv10022876m.g Eutrema salsugineum HOM05D002799 ORTHO05D008889 9.4e-48 194.1 174 57.5
Solyc10g006600.4 Solanum lycopersicum HOM05D002799 ORTHO05D008889 8.0e-47 191.0 153 64.7
Mapoly0046s0106 Marchantia polymorpha HOM05D002799 ORTHO05D008889 2.6e-42 176.0 182 51.1
Aqoxy7G00884 Aquilegia oxysepala HOM05D002799 ORTHO05D008889 1.0e-41 174.1 141 61.7
ClCG01G005050 Citrullus lanatus HOM05D002799 ORTHO05D008889 2.9e-41 172.6 139 63.3
Sc19g0000240 Simmondsia chinensis HOM05D002799 ORTHO05D008889 5.0e-41 171.8 131 62.6
ATR0829G224 Amborella trichopoda HOM05D002799 ORTHO05D008889 1.1e-40 170.6 189 47.6
COL.COLO4_19775 Corchorus olitorius HOM05D002799 ORTHO05D008889 6.1e-39 164.9 131 62.6
AagrBONN_evm.TU.Sc2ySwM_362.1504 Anthoceros agrestis HOM05D002799 ORTHO05D008889 1.0e-38 164.1 188 44.7
Ca_14681_v3 Cicer arietinum L. HOM05D002799 ORTHO05D008889 1.5e-37 160.2 130 60.8
Pp3c5_2750 Physcomitrium patens HOM05D002799 ORTHO05D008889 4.8e-36 155.2 196 43.9
Psat4g127040 Pisum sativum HOM05D002799 ORTHO05D008889 4.8e-36 155.2 130 58.5
PGR004G1571 Punica granatum HOM05D002799 ORTHO05D008889 8.3e-36 154.5 129 60.5
TPR.G26908 Trifolium pratense HOM05D002799 ORTHO05D008889 2.4e-35 152.9 122 60.7
MD01G1233600 Malus domestica HOM05D002799 ORTHO05D008889 1.7e-33 146.7 98 70.4
SMO174G0264 Selaginella moellendorffii HOM05D002799 ORTHO05D008889 1.1e-32 144.1 168 47.6
Rhsim03G0164800 Rhododendron simsii HOM05D002799 ORTHO05D008889 2.7e-31 139.4 103 69.9
PSO675G4133 Papaver somniferum HOM05D002799 ORTHO05D008889 1.2e-26 124.0 152 48.7
SHI03438 Sapria himalayana HOM05D002799 ORTHO05D008889 5.0e-25 118.6 128 47.7
HPP92_002455 Vanilla planifolia HOM05D002799 ORTHO05D008889 1.5e-24 117.1 178 39.9
PRCOL_00003203 Prasinoderma coloniale HOM05D002799 ORTHO05D008889 6.1e-23 111.7 173 39.9
Cre08.g385750 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D008889 2.3e-22 109.8 170 35.3
MCO08G110 Micromonas commoda HOM05D002799 ORTHO05D008889 2.8e-20 102.8 155 41.3
Cfa026682 Carpinus fangiana HOM05D002799 ORTHO05D008889 2.3e-17 93.2 167 36.5
Ca_28676_v3 Cicer arietinum L. HOM05D002799 ORTHO05D008889 4.7e-15 85.5 168 32.7
BcaB03g16409 Brassica carinata HOM05D002799 ORTHO05D008889 3.1e-14 82.8 102 45.1
C07p06790 Brassica napus HOM05D002799 ORTHO05D008889 2.0e-13 80.1 131 38.2
HanXRQChr10g0305151 Helianthus annuus HOM05D002799 ORTHO05D008889 3.2e-11 72.8 61 59.0
Zm00001eb177740 Zea mays HOM05D002799 ORTHO05D008889 1.8e-06 57.0 54 46.3


User provided reference genes

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