Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g02009 Nelumbo nucifera HOM05D002799 ORTHO05D007076 1.9e-261 905.2 436 100.0
TAR374G0973 Trochodendron aralioides HOM05D002799 ORTHO05D007076 2.1e-170 602.8 443 67.7
CSS0010295 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D007076 3.8e-164 582.0 443 63.4
Actinidia08737 Actinidia chinensis HOM05D002799 ORTHO05D007076 7.1e-155 551.2 444 60.4
Dinv17267 Davidia involucrata HOM05D002799 ORTHO05D007076 1.7e-153 546.6 436 63.3
MBI04_g21139_MAGBIO Magnolia biondii HOM05D002799 ORTHO05D007076 2.4e-150 536.2 435 60.9
GSVIVG01024449001 Vitis vinifera HOM05D002799 ORTHO05D007076 3.1e-150 535.8 443 61.2
QL09p025824 Quercus lobata HOM05D002799 ORTHO05D007076 1.9e-147 526.6 442 58.8
CiPaw.05G237100 Carya illinoinensis HOM05D002799 ORTHO05D007076 5.6e-144 515.0 444 58.3
COL.COLO4_24619 Corchorus olitorius HOM05D002799 ORTHO05D007076 5.3e-142 508.4 393 62.6
Ciclev10001355m.g Citrus clementina HOM05D002799 ORTHO05D007076 1.4e-139 500.4 348 69.8
Gohir.D09G053900 Gossypium hirsutum HOM05D002799 ORTHO05D007076 3.5e-138 495.7 443 57.8
Thecc.08G172500 Theobroma cacao HOM05D002799 ORTHO05D007076 4.6e-138 495.4 443 56.4
Gorai.006G053300 Gossypium raimondii HOM05D002799 ORTHO05D007076 1.5e-136 490.3 444 57.4
Duzib211G0014 Durio zibethinus HOM05D002799 ORTHO05D007076 7.4e-136 488.0 435 57.7
ATR0829G228 Amborella trichopoda HOM05D002799 ORTHO05D007076 2.8e-135 486.1 341 67.2
Manes.08G164400 Manihot esculenta HOM05D002799 ORTHO05D007076 1.8e-134 483.4 444 56.3
Atru.chr12.2008 Acer truncatum HOM05D002799 ORTHO05D007076 4.0e-134 482.3 325 71.7
Gohir.A09G055000 Gossypium hirsutum HOM05D002799 ORTHO05D007076 6.9e-134 481.5 443 56.9
Lj1C1032G6 Lonicera japonica HOM05D002799 ORTHO05D007076 1.0e-132 477.6 435 58.4
CAN.G289.47 Capsicum annuum HOM05D002799 ORTHO05D007076 2.2e-132 476.5 448 55.6
vmacro06500 Vaccinium macrocarpon HOM05D002799 ORTHO05D007076 1.3e-127 460.7 331 67.7
MD01G1233700 Malus domestica HOM05D002799 ORTHO05D007076 2.8e-127 459.5 446 53.6
Prupe.2G323900 Prunus persica HOM05D002799 ORTHO05D007076 1.4e-126 457.2 376 59.6
Sopen03g002460 Solanum pennellii HOM05D002799 ORTHO05D007076 6.9e-126 454.9 396 58.8
PGSC0003DMG400012810 Solanum tuberosum HOM05D002799 ORTHO05D007076 1.2e-125 454.1 413 56.9
CsaV3_4G004510 Cucumis sativus L. HOM05D002799 ORTHO05D007076 1.0e-124 451.1 336 66.7
Eucgr.K00095 Eucalyptus grandis HOM05D002799 ORTHO05D007076 1.0e-124 451.1 368 61.1
Solyc03g006460.4 Solanum lycopersicum HOM05D002799 ORTHO05D007076 2.2e-124 449.9 369 61.0
TWI34G0554 Tripterygium wilfordii HOM05D002799 ORTHO05D007076 6.5e-124 448.4 348 64.9
PGR004G1694 Punica granatum HOM05D002799 ORTHO05D007076 1.1e-123 447.6 428 56.1
Potri.015G079500 Populus trichocarpa HOM05D002799 ORTHO05D007076 2.5e-123 446.4 331 64.7
MSTRG.11401 Avicennia marina HOM05D002799 ORTHO05D007076 7.2e-123 444.9 354 63.8
SalBow5G5430 Salvia bowleyana HOM05D002799 ORTHO05D007076 2.7e-122 443.0 328 67.1
Thhalv10002559m.g Eutrema salsugineum HOM05D002799 ORTHO05D007076 7.9e-122 441.4 364 59.9
PSO782G0547 Papaver somniferum HOM05D002799 ORTHO05D007076 1.0e-121 441.0 338 65.7
DCAR_009002 Daucus carota HOM05D002799 ORTHO05D007076 3.0e-121 439.5 336 64.6
Lj3g0008833 Lotus japonicus HOM05D002799 ORTHO05D007076 5.1e-121 438.7 335 64.8
AL3G42700 Arabidopsis lyrata HOM05D002799 ORTHO05D007076 6.7e-121 438.3 362 60.5
PSO063G7569 Papaver somniferum HOM05D002799 ORTHO05D007076 1.7e-119 433.7 334 65.3
Sed0006194 Sechium edule HOM05D002799 ORTHO05D007076 1.7e-119 433.7 335 64.5
THA.LOC104815357 Tarenaya hassleriana HOM05D002799 ORTHO05D007076 2.2e-119 433.3 371 60.1
CARHR102970 Cardamine hirsuta HOM05D002799 ORTHO05D007076 4.8e-119 432.2 361 60.4
AT2G04940 Arabidopsis thaliana HOM05D002799 ORTHO05D007076 6.3e-119 431.8 372 58.3
Carub.0003s2662 Capsella rubella HOM05D002799 ORTHO05D007076 8.2e-119 431.4 370 59.7
Glyma.12G019100 Glycine max HOM05D002799 ORTHO05D007076 1.1e-118 431.0 344 61.9
Phvul.011G021500 Phaseolus vulgaris HOM05D002799 ORTHO05D007076 1.1e-118 431.0 345 61.2
Cc03_g15080 Coffea canephora HOM05D002799 ORTHO05D007076 1.8e-118 430.3 326 66.3
Sp3g23560 Schrenkiella parvula HOM05D002799 ORTHO05D007076 1.8e-118 430.3 365 58.9
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 2.4e-118 429.9 331 62.8
VMungo1127G2112 Vigna mungo HOM05D002799 ORTHO05D007076 2.4e-118 429.9 351 60.4
Ca_29855_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 4.1e-118 429.1 342 61.7
arahy.Tifrunner.gnm1.ann1.IZ2599 Arachis hypogaea HOM05D002799 ORTHO05D007076 6.9e-118 428.3 344 61.3
FAN10G3482 Fragaria x ananassa HOM05D002799 ORTHO05D007076 9.1e-118 427.9 337 61.7
FvH4_7g33590 Fragaria vesca HOM05D002799 ORTHO05D007076 1.5e-117 427.2 334 63.2
arahy.Tifrunner.gnm1.ann1.ZMX436 Arachis hypogaea HOM05D002799 ORTHO05D007076 2.0e-117 426.8 344 61.3
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 2.6e-117 426.4 328 65.5
Medtr4g077510 Medicago truncatula HOM05D002799 ORTHO05D007076 3.4e-117 426.0 326 62.6
Oeu014983.2 Olea europaea HOM05D002799 ORTHO05D007076 3.4e-117 426.0 371 59.0
A03p44540 Brassica napus HOM05D002799 ORTHO05D007076 4.5e-117 425.6 353 59.5
BraA03t13587Z Brassica rapa HOM05D002799 ORTHO05D007076 4.5e-117 425.6 353 59.5
BcaB08g34494 Brassica carinata HOM05D002799 ORTHO05D007076 5.9e-117 425.2 330 62.4
Lalb_Chr03g0024441 Lupinus albus HOM05D002799 ORTHO05D007076 1.7e-116 423.7 335 62.7
MD07G1305800 Malus domestica HOM05D002799 ORTHO05D007076 2.2e-116 423.3 393 54.5
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 3.8e-116 422.5 331 61.6
Migut.I00118 Erythranthe guttata HOM05D002799 ORTHO05D007076 8.5e-116 421.4 337 62.3
CANSAT21G1863 Cannabis sativa HOM05D002799 ORTHO05D007076 3.2e-115 419.5 352 61.6
BcaC01g03181 Brassica carinata HOM05D002799 ORTHO05D007076 4.2e-115 419.1 324 63.0
C03p55340 Brassica napus HOM05D002799 ORTHO05D007076 4.2e-115 419.1 324 63.0
BolC3t17806H Brassica oleracea HOM05D002799 ORTHO05D007076 4.2e-115 419.1 324 63.0
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 9.4e-115 417.9 327 62.4
Aqoxy3G02040 Aquilegia oxysepala HOM05D002799 ORTHO05D007076 1.2e-114 417.5 363 58.4
EL10Ac3g05098 Beta vulgaris HOM05D002799 ORTHO05D007076 1.6e-114 417.2 335 62.1
Ca_04931_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 3.6e-114 416.0 332 61.4
HPP92_015127 Vanilla planifolia HOM05D002799 ORTHO05D007076 3.3e-112 409.5 455 47.9
AUR62028151 Chenopodium quinoa HOM05D002799 ORTHO05D007076 5.7e-112 408.7 354 58.2
Lj2A621G40 Lonicera japonica HOM05D002799 ORTHO05D007076 5.7e-112 408.7 375 56.3
RcHm_v2.0_Chr1g0383851 Rosa chinensis HOM05D002799 ORTHO05D007076 5.7e-112 408.7 252 74.6
MELO3C017614.2 Cucumis melo HOM05D002799 ORTHO05D007076 4.8e-111 405.6 366 59.0
ClCG07G017310 Citrullus lanatus HOM05D002799 ORTHO05D007076 6.3e-111 405.2 337 61.1
Ah.13g072670 Amaranthus hybridus HOM05D002799 ORTHO05D007076 1.1e-110 404.4 335 60.0
HanXRQChr04g0105251 Helianthus annuus HOM05D002799 ORTHO05D007076 3.5e-109 399.4 338 61.5
Hma1.2p1_0758F.1_g213600 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 5.9e-109 398.7 246 74.4
Aa31LG3G2760 Aethionema arabicum HOM05D002799 ORTHO05D007076 2.1e-106 390.2 321 59.8
Lsat_1_v5_gn_8_3761 Lactuca sativa HOM05D002799 ORTHO05D007076 2.6e-101 373.2 360 55.3
ECA233G3743 Erigeron canadensis HOM05D002799 ORTHO05D007076 3.5e-101 372.9 327 57.5
unitig_62.g23564 Utricularia gibba HOM05D002799 ORTHO05D007076 2.9e-100 369.8 325 60.6
AUR62005914 Chenopodium quinoa HOM05D002799 ORTHO05D007076 3.6e-98 362.8 376 52.1
Psat7g171360 Pisum sativum HOM05D002799 ORTHO05D007076 6.8e-97 358.6 334 55.4
Cfa015896 Carpinus fangiana HOM05D002799 ORTHO05D007076 2.2e-95 353.6 426 48.1
Hund09770 Selenicereus undatus HOM05D002799 ORTHO05D007076 1.8e-94 350.5 362 51.9
Zm00001eb430250 Zea mays HOM05D002799 ORTHO05D007076 3.5e-93 346.3 273 60.8
Solyc03g006452.1 Solanum lycopersicum HOM05D002799 ORTHO05D007076 7.7e-93 345.1 318 57.2
Os04g0599400 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 7.2e-91 338.6 233 67.0
Os02g0238500 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 1.5e-88 330.9 259 62.2
Sc13g0010800 Simmondsia chinensis HOM05D002799 ORTHO05D007076 2.4e-86 323.6 275 57.5
Cpa.g.sc67.53 Carica papaya HOM05D002799 ORTHO05D007076 4.5e-85 319.3 192 75.5
AagrBONN_evm.TU.Sc2ySwM_368.1885 Anthoceros agrestis HOM05D002799 ORTHO05D007076 4.7e-82 309.3 357 48.2
Pp3c3_18900 Physcomitrium patens HOM05D002799 ORTHO05D007076 4.0e-81 306.2 278 56.5
Pp3c5_23880 Physcomitrium patens HOM05D002799 ORTHO05D007076 1.8e-78 297.4 280 54.3
Actinidia34299 Actinidia chinensis HOM05D002799 ORTHO05D007076 1.7e-76 290.8 195 70.8
CBR_g26239 Chara braunii HOM05D002799 ORTHO05D007076 2.9e-71 273.5 318 43.7
Mapoly0041s0072 Marchantia polymorpha HOM05D002799 ORTHO05D007076 1.4e-70 271.2 275 51.3
Haze_00592 Corylus avellana HOM05D002799 ORTHO05D007076 1.4e-65 254.6 309 46.0
SMO196G0267 Selaginella moellendorffii HOM05D002799 ORTHO05D007076 3.1e-65 253.4 196 59.7
Lj3A801T16 Lonicera japonica HOM05D002799 ORTHO05D007076 2.4e-62 243.8 231 51.1
Sabra15G0103700 Salix brachista HOM05D002799 ORTHO05D007076 3.1e-57 226.9 295 43.7
Hma1.2p1_0758F.1_g213590 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 7.6e-56 222.2 210 55.7
FvH4_7g33592 Fragaria vesca HOM05D002799 ORTHO05D007076 1.2e-50 204.9 123 75.6
FvH4_7g33593 Fragaria vesca HOM05D002799 ORTHO05D007076 3.1e-49 200.3 197 52.3
Zm00001eb071960 Zea mays HOM05D002799 ORTHO05D007076 2.0e-48 197.6 118 72.9
Peaxi162Scf00195g01110 Petunia axillaris HOM05D002799 ORTHO05D007076 7.6e-48 195.7 111 80.2
Sabra15G0103800 Salix brachista HOM05D002799 ORTHO05D007076 3.8e-47 193.4 117 75.2
Nitab4.5_0000701g0060 Nicotiana tabacum HOM05D002799 ORTHO05D007076 3.0e-36 157.1 167 51.5
Nitab4.5_0000701g0050 Nicotiana tabacum HOM05D002799 ORTHO05D007076 8.7e-36 155.6 249 41.4
Nitab4.5_0000793g0030 Nicotiana tabacum HOM05D002799 ORTHO05D007076 9.6e-35 152.1 169 51.5
Nitab4.5_0000793g0020 Nicotiana tabacum HOM05D002799 ORTHO05D007076 1.3e-34 151.8 142 54.2
PRCOL_00006278 Prasinoderma coloniale HOM05D002799 ORTHO05D007076 6.2e-34 149.4 272 38.6
SEGI_10035 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 3.4e-32 143.7 91 71.4
Cre06.g267850 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D007076 1.0e-28 132.1 200 40.0
HanXRQChr15g0477781 Helianthus annuus HOM05D002799 ORTHO05D007076 1.0e-23 115.5 98 59.2
QL03p008982 Quercus lobata HOM05D000009 ORTHO05D000008 1.7e-23 114.8 252 32.1
Cfa023729 Carpinus fangiana HOM05D002799 ORTHO05D007076 2.5e-22 110.9 369 26.8
TPR.G19958 Trifolium pratense HOM05D002799 ORTHO05D007076 9.3e-22 109.0 56 80.4
TPR.G21490 Trifolium pratense HOM05D002799 ORTHO05D007076 1.0e-20 105.5 73 67.1
Haze_00593 Corylus avellana HOM05D002799 ORTHO05D007076 1.5e-19 101.7 61 77.0
Lj2C621T3 Lonicera japonica HOM05D002799 ORTHO05D007076 5.7e-19 99.8 63 76.2
Cpa.g.sc67.52 Carica papaya HOM05D002799 ORTHO05D007076 7.4e-19 99.4 196 34.2
SEGI_38885 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 1.3e-18 98.6 78 60.3
Actinidia04566 Actinidia chinensis HOM05D002799 ORTHO05D007076 2.1e-18 97.8 189 36.5
FAN10G3554 Fragaria x ananassa HOM05D012649 ORTHO05D007076 6.5e-15 86.3 121 40.5
Zm00001eb315690 Zea mays HOM05D002799 ORTHO05D007076 2.1e-13 81.3 55 61.8
QL03p009165 Quercus lobata HOM05D000009 ORTHO05D000008 2.7e-13 80.9 56 67.9
VMungo1127G1706 Vigna mungo HOM05D002799 ORTHO05D007076 1.1e-11 75.5 194 29.4
SalBow8G2774 Salvia bowleyana HOM05D002799 ORTHO05D007076 2.6e-08 64.3 40 75.0
SHI36546 Sapria himalayana HOM05D000107 ORTHO05D000233 5.0e-07 60.1 49 61.2


User provided reference genes

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