Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g02007 Nelumbo nucifera HOM05D005336 ORTHO05D006511 2.0e-40 168.7 87 100.0
Nn3g18754 Nelumbo nucifera HOM05D005336 ORTHO05D006511 9.2e-14 80.1 86 52.3
Manes.04G133300 Manihot esculenta HOM05D005336 ORTHO05D006511 2.7e-13 78.6 75 56.0
Glyma.15G085000 Glycine max HOM05D005336 ORTHO05D006511 3.0e-12 75.1 75 52.0
Ca_00460_v3 Cicer arietinum L. HOM05D005336 ORTHO05D006511 3.9e-12 74.7 65 63.1
COL.COLO4_10851 Corchorus olitorius HOM05D005336 ORTHO05D006511 3.9e-12 74.7 71 52.1
Peaxi162Scf00498g00079 Petunia axillaris HOM05D005336 ORTHO05D006511 5.1e-12 74.3 73 57.5
TAR375G0214 Trochodendron aralioides HOM05D005336 ORTHO05D006511 5.1e-12 74.3 78 51.3
Thecc.03G215000 Theobroma cacao HOM05D005336 ORTHO05D006511 8.7e-12 73.6 71 53.5
CiPaw.11G108200 Carya illinoinensis HOM05D005336 ORTHO05D006511 1.5e-11 72.8 85 48.2
Phvul.007G247100 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 2.5e-11 72.0 64 57.8
FAN13G1264 Fragaria x ananassa HOM05D005336 ORTHO05D006511 5.6e-11 70.9 63 58.7
Haze_09222 Corylus avellana HOM05D005336 ORTHO05D006511 7.3e-11 70.5 57 57.9
CANSAT21G1898 Cannabis sativa HOM05D005336 ORTHO05D006511 9.6e-11 70.1 75 54.7
Nitab4.5_0000960g0060 Nicotiana tabacum HOM05D005336 ORTHO05D006511 9.6e-11 70.1 75 53.3
Nitab4.5_0008499g0040 Nicotiana tabacum HOM05D005336 ORTHO05D006511 9.6e-11 70.1 74 55.4
FvH4_5g10310 Fragaria vesca HOM05D005336 ORTHO05D006511 1.3e-10 69.7 61 59.0
FAN18G0874 Fragaria x ananassa HOM05D005336 ORTHO05D006511 1.3e-10 69.7 61 59.0
FAN04G3153 Fragaria x ananassa HOM05D005336 ORTHO05D006511 1.6e-10 69.3 61 59.0
FAN08G3085 Fragaria x ananassa HOM05D005336 ORTHO05D006511 1.6e-10 69.3 62 58.1
TPR.G4515 Trifolium pratense HOM05D005336 ORTHO05D006511 1.6e-10 69.3 56 64.3
CSS0006649 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 2.1e-10 68.9 69 59.4
Cfa011882 Carpinus fangiana HOM05D005336 ORTHO05D006511 2.1e-10 68.9 55 56.4
Duzib084G1128 Durio zibethinus HOM05D005336 ORTHO05D006511 2.1e-10 68.9 68 51.5
Duzib205G0686 Durio zibethinus HOM05D005336 ORTHO05D006511 2.1e-10 68.9 65 55.4
MD06G1125100 Malus domestica HOM05D005336 ORTHO05D006511 2.1e-10 68.9 64 51.6
RcHm_v2.0_Chr7g0187911 Rosa chinensis HOM05D005336 ORTHO05D006511 2.8e-10 68.6 62 56.5
CSS0030685 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 4.8e-10 67.8 68 58.8
Phvul.006G173850 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 4.8e-10 67.8 78 48.7
Duzib068G0481 Durio zibethinus HOM05D005336 ORTHO05D006511 6.2e-10 67.4 68 51.5
Gohir.A02G094800 Gossypium hirsutum HOM05D005336 ORTHO05D006511 6.2e-10 67.4 81 50.6
Gohir.D03G088700 Gossypium hirsutum HOM05D005336 ORTHO05D006511 8.1e-10 67.0 81 50.6
Lalb_Chr19g0129261 Lupinus albus HOM05D005336 ORTHO05D006511 1.1e-09 66.6 62 58.1
TWI15G0432 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 1.4e-09 66.2 61 57.4
Gorai.003G073000 Gossypium raimondii HOM05D005336 ORTHO05D006511 2.4e-09 65.5 81 49.4
Lj6g0026446 Lotus japonicus HOM05D005336 ORTHO05D006511 2.4e-09 65.5 63 52.4
Medtr2g016680 Medicago truncatula HOM05D005336 ORTHO05D006511 2.4e-09 65.5 48 70.8
arahy.Tifrunner.gnm1.ann1.GG3QCC Arachis hypogaea HOM05D005336 ORTHO05D006511 3.1e-09 65.1 64 53.1
Potri.011G149100 Populus trichocarpa HOM05D005336 ORTHO05D006511 3.1e-09 65.1 51 60.8
Solyc01g066860.3 Solanum lycopersicum HOM05D005336 ORTHO05D006511 3.1e-09 65.1 62 51.6
PGSC0003DMG400044996 Solanum tuberosum HOM05D005336 ORTHO05D006511 3.1e-09 65.1 62 51.6
Sopen01g028460 Solanum pennellii HOM05D005336 ORTHO05D006511 4.0e-09 64.7 62 51.6
VMungo0540G0063 Vigna mungo HOM05D005336 ORTHO05D006511 4.0e-09 64.7 78 43.6
AUR62009906 Chenopodium quinoa HOM05D005336 ORTHO05D006511 5.3e-09 64.3 65 49.2
MELO3C016357.2 Cucumis melo HOM05D005336 ORTHO05D006511 6.9e-09 63.9 72 47.2
Lj2P149T61 Lonicera japonica HOM05D005336 ORTHO05D006511 6.9e-09 63.9 65 55.4
CiPaw.12G074100 Carya illinoinensis HOM05D005336 ORTHO05D006511 9.0e-09 63.5 70 48.6
CsaV3_4G005910 Cucumis sativus L. HOM05D005336 ORTHO05D006511 1.2e-08 63.2 66 50.0
Oeu011890.1 Olea europaea HOM05D005336 ORTHO05D006511 1.2e-08 63.2 69 47.8
Sabra11G0134200 Salix brachista HOM05D005336 ORTHO05D006511 1.2e-08 63.2 73 50.7
unitig_62.g23264 Utricularia gibba HOM05D005336 ORTHO05D006511 1.2e-08 63.2 52 59.6
Cc05_g01210 Coffea canephora HOM05D005336 ORTHO05D006511 1.5e-08 62.8 70 50.0
CAN.G129.24 Capsicum annuum HOM05D005336 ORTHO05D006511 2.0e-08 62.4 59 54.2
Dinv11470 Davidia involucrata HOM05D005336 ORTHO05D006511 2.0e-08 62.4 58 56.9
Actinidia27276 Actinidia chinensis HOM05D005336 ORTHO05D006511 2.6e-08 62.0 57 57.9
Eucgr.E01097 Eucalyptus grandis HOM05D005336 ORTHO05D006511 2.6e-08 62.0 53 50.9
Glyma.01G146800 Glycine max HOM05D005336 ORTHO05D006511 2.6e-08 62.0 39 71.8
Glyma.10G112800 Glycine max HOM05D005336 ORTHO05D006511 2.6e-08 62.0 39 71.8
Prupe.5G135700 Prunus persica HOM05D005336 ORTHO05D006511 2.6e-08 62.0 59 52.5
VMungo0720G3070 Vigna mungo HOM05D005336 ORTHO05D006511 2.6e-08 62.0 56 53.6
AUR62001462 Chenopodium quinoa HOM05D005336 ORTHO05D006511 3.4e-08 61.6 75 44.0
PSO675G0589 Papaver somniferum HOM05D005336 ORTHO05D006511 3.4e-08 61.6 63 52.4
Potri.001G452900 Populus trichocarpa HOM05D005336 ORTHO05D006511 3.4e-08 61.6 60 51.7
QL12p003217 Quercus lobata HOM05D005336 ORTHO05D006511 3.4e-08 61.6 62 50.0
Sed0023501 Sechium edule HOM05D005336 ORTHO05D006511 3.4e-08 61.6 45 62.2
Dinv08689 Davidia involucrata HOM05D005336 ORTHO05D006511 4.4e-08 61.2 55 56.4
TWI81G0214 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 4.4e-08 61.2 67 52.2
ClCG07G008170 Citrullus lanatus HOM05D005336 ORTHO05D006511 5.8e-08 60.8 67 50.7
Oeu026757.1 Olea europaea HOM05D005336 ORTHO05D006511 5.8e-08 60.8 70 47.1
Glyma.02G159700 Glycine max HOM05D005336 ORTHO05D006511 7.6e-08 60.5 39 69.2
MD00G1118700 Malus domestica HOM05D005336 ORTHO05D006511 7.6e-08 60.5 65 49.2
Glyma.13G227300 Glycine max HOM05D005336 ORTHO05D006511 9.9e-08 60.1 78 43.6
Rhsim02G0255200 Rhododendron simsii HOM05D005336 ORTHO05D006511 9.9e-08 60.1 64 51.6
Sopen12g034260 Solanum pennellii HOM05D005336 ORTHO05D006511 1.7e-07 59.3 66 48.5
Psat1g195600 Pisum sativum HOM05D005336 ORTHO05D006511 2.2e-07 58.9 54 59.3
Sabra16G0306000 Salix brachista HOM05D005336 ORTHO05D006511 2.2e-07 58.9 80 47.5
Solyc12g099590.1 Solanum lycopersicum HOM05D005336 ORTHO05D006511 2.9e-07 58.5 66 45.5
MSTRG.13689 Avicennia marina HOM05D005336 ORTHO05D006511 4.9e-07 57.8 66 48.5
Gohir.A12G243100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 4.9e-07 57.8 64 50.0
Gorai.008G261600 Gossypium raimondii HOM05D005336 ORTHO05D006511 4.9e-07 57.8 64 50.0
Cpa.g.sc62.61 Carica papaya HOM05D005336 ORTHO05D006511 6.4e-07 57.4 65 46.2
Gohir.D12G244100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 6.4e-07 57.4 64 50.0
Nitab4.5_0018124g0020 Nicotiana tabacum HOM05D005336 ORTHO05D006511 6.4e-07 57.4 67 50.7
Ah.15g095260 Amaranthus hybridus HOM05D005336 ORTHO05D006511 8.4e-07 57.0 73 47.9
arahy.Tifrunner.gnm1.ann1.W1T8WI Arachis hypogaea HOM05D005336 ORTHO05D006511 1.1e-06 56.6 64 48.4
SGA_v2.0_scaffold71G23936 Striga asiatica HOM05D005336 ORTHO05D006511 1.1e-06 56.6 73 47.9
Actinidia04156 Actinidia chinensis HOM05D005336 ORTHO05D006511 1.4e-06 56.2 37 67.6
Lsat_1_v5_gn_8_120821 Lactuca sativa HOM05D005336 ORTHO05D006511 1.4e-06 56.2 70 47.1
PGSC0003DMG400037636 Solanum tuberosum HOM05D005336 ORTHO05D006511 1.4e-06 56.2 67 46.3
PGR031G1780 Punica granatum HOM05D005336 ORTHO05D006511 1.9e-06 55.8 42 59.5
DCAR_023826 Daucus carota HOM05D005336 ORTHO05D006511 3.2e-06 55.1 72 45.8
SGA_v2.0_scaffold99G29499 Striga asiatica HOM05D005336 ORTHO05D006511 3.2e-06 55.1 75 45.3
Atru.chr9.1827 Acer truncatum HOM05D005336 ORTHO05D006511 4.2e-06 54.7 58 46.6
Ah.08g216960 Amaranthus hybridus HOM05D005336 ORTHO05D006511 4.2e-06 54.7 56 50.0
Ciclev10022546m.g Citrus clementina HOM05D005336 ORTHO05D006511 4.2e-06 54.7 58 48.3
Lsat_1_v5_gn_4_127821 Lactuca sativa HOM05D005336 ORTHO05D006511 4.2e-06 54.7 52 50.0
HanXRQChr05g0144281 Helianthus annuus HOM05D005336 ORTHO05D006511 5.4e-06 54.3 83 39.8
Sc12g0010690 Simmondsia chinensis HOM05D005336 ORTHO05D006511 9.3e-06 53.5 75 45.3


User provided reference genes

Program Settings