Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g01975 Nelumbo nucifera HOM05D003929 ORTHO05D004499 1.9e-271 938.7 512 100.0
TAR622G0564 Trochodendron aralioides HOM05D003929 ORTHO05D004499 5.8e-156 555.1 563 60.4
TAR374G1605 Trochodendron aralioides HOM05D003929 ORTHO05D004499 7.5e-156 554.7 568 60.4
GSVIVG01007750001 Vitis vinifera HOM05D003929 ORTHO05D004499 2.3e-136 490.0 544 56.2
Dinv20657 Davidia involucrata HOM05D003929 ORTHO05D004499 4.8e-134 482.3 552 56.0
TWI39G0937 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 1.8e-133 480.3 528 56.6
PSO832G4520 Papaver somniferum HOM05D003929 ORTHO05D004499 3.1e-133 479.6 540 56.9
Hma1.2p1_0176F.1_g077430 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 1.2e-129 467.6 543 55.1
TWI14G0242 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 2.1e-129 466.8 544 54.2
TWI31G0970 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 2.7e-129 466.5 528 55.7
PSO063G6021 Papaver somniferum HOM05D003929 ORTHO05D004499 2.3e-128 463.4 563 54.0
Atru.chr9.2475 Acer truncatum HOM05D003929 ORTHO05D004499 1.9e-127 460.3 543 54.3
Potri.012G080800 Populus trichocarpa HOM05D003929 ORTHO05D004499 4.3e-127 459.1 553 53.9
Dinv02898 Davidia involucrata HOM05D003929 ORTHO05D004499 2.8e-126 456.4 546 53.8
CiPaw.11G026500 Carya illinoinensis HOM05D003929 ORTHO05D004499 6.2e-126 455.3 548 52.6
MBI10_g41915_MAGBIO Magnolia biondii HOM05D003929 ORTHO05D004499 6.2e-126 455.3 551 55.4
Aqoxy3G02955 Aquilegia oxysepala HOM05D003929 ORTHO05D004499 1.2e-124 451.1 567 51.7
Cpa.g.sc770.1 Carica papaya HOM05D003929 ORTHO05D004499 2.0e-124 450.3 546 52.7
Potri.015G076100 Populus trichocarpa HOM05D003929 ORTHO05D004499 1.9e-122 443.7 544 53.1
Duzib068G1333 Durio zibethinus HOM05D003929 ORTHO05D004499 2.4e-122 443.4 554 51.6
Prupe.5G174100 Prunus persica HOM05D003929 ORTHO05D004499 2.4e-122 443.4 548 52.4
Cfa019114 Carpinus fangiana HOM05D003929 ORTHO05D004499 2.1e-121 440.3 567 50.4
QL10p011722 Quercus lobata HOM05D003929 ORTHO05D004499 4.6e-121 439.1 556 53.4
Oeu016382.1 Olea europaea HOM05D003929 ORTHO05D004499 1.3e-120 437.6 546 52.6
RcHm_v2.0_Chr7g0193581 Rosa chinensis HOM05D003929 ORTHO05D004499 2.3e-120 436.8 544 52.0
FAN08G2589 Fragaria x ananassa HOM05D003929 ORTHO05D004499 6.7e-120 435.3 521 54.5
CiPaw.12G026400 Carya illinoinensis HOM05D003929 ORTHO05D004499 9.6e-119 431.4 548 50.7
FAN13G1321 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.6e-118 430.6 541 52.5
FAN04G3176 Fragaria x ananassa HOM05D003929 ORTHO05D004499 2.1e-118 430.3 542 52.6
FvH4_5g05290 Fragaria vesca HOM05D003929 ORTHO05D004499 3.7e-118 429.5 543 52.9
Gohir.A12G274000 Gossypium hirsutum HOM05D003929 ORTHO05D004499 3.7e-118 429.5 552 52.2
CSS0017959 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 6.2e-118 428.7 507 53.8
Lj5C124G9 Lonicera japonica HOM05D003929 ORTHO05D004499 1.1e-117 427.9 536 53.5
Gorai.008G295200 Gossypium raimondii HOM05D003929 ORTHO05D004499 1.4e-117 427.6 552 51.6
Gohir.D12G274700 Gossypium hirsutum HOM05D003929 ORTHO05D004499 5.3e-117 425.6 551 51.9
FAN18G3294 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.2e-116 424.5 543 51.7
FAN18G3765 Fragaria x ananassa HOM05D003929 ORTHO05D004499 1.2e-116 424.5 542 52.0
Haze_07467 Corylus avellana HOM05D003929 ORTHO05D004499 2.2e-115 420.2 629 45.8
Solyc06g071470.4 Solanum lycopersicum HOM05D003929 ORTHO05D004499 2.9e-115 419.9 546 50.5
Nitab4.5_0001017g0080 Nicotiana tabacum HOM05D003929 ORTHO05D004499 8.4e-115 418.3 530 51.1
Eucgr.B00317 Eucalyptus grandis HOM05D003929 ORTHO05D004499 1.1e-114 417.9 521 51.6
Sopen06g027750 Solanum pennellii HOM05D003929 ORTHO05D004499 1.1e-114 417.9 538 51.3
Duzib205G0135 Durio zibethinus HOM05D003929 ORTHO05D004499 2.5e-114 416.8 549 51.2
PGSC0003DMG400027090 Solanum tuberosum HOM05D003929 ORTHO05D004499 5.5e-114 415.6 541 51.2
CAN.G628.79 Capsicum annuum HOM05D003929 ORTHO05D004499 1.2e-113 414.5 546 50.9
Rhsim08G0171800 Rhododendron simsii HOM05D003929 ORTHO05D004499 1.2e-113 414.5 523 53.2
VMungo1215G1851 Vigna mungo HOM05D003929 ORTHO05D004499 2.3e-112 410.2 524 51.9
SalBow5G2324 Salvia bowleyana HOM05D003929 ORTHO05D004499 8.7e-112 408.3 515 51.3
Thecc.03G012300 Theobroma cacao HOM05D003929 ORTHO05D004499 1.6e-110 404.1 549 49.9
Manes.14G066000 Manihot esculenta HOM05D003929 ORTHO05D004499 2.1e-110 403.7 555 51.2
Lalb_Chr13g0297821 Lupinus albus HOM05D003929 ORTHO05D004499 8.2e-110 401.7 543 48.1
Phvul.003G200200 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 8.2e-110 401.7 516 50.8
Hma1.2p1_0000F.1_g000890 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 1.1e-109 401.4 500 52.4
Glyma.17G089700 Glycine max HOM05D003929 ORTHO05D004499 6.9e-109 398.7 507 51.7
DCAR_026132 Daucus carota HOM05D003929 ORTHO05D004499 1.0e-107 394.8 550 50.2
MD14G1180600 Malus domestica HOM05D003929 ORTHO05D004499 1.3e-107 394.4 504 51.8
Manes.06G104600 Manihot esculenta HOM05D003929 ORTHO05D004499 3.8e-107 392.9 519 50.3
Peaxi162Scf00017g02914 Petunia axillaris HOM05D003929 ORTHO05D004499 6.5e-107 392.1 546 49.3
MSTRG.11449 Avicennia marina HOM05D003929 ORTHO05D004499 8.5e-107 391.7 550 50.0
TPR.G37553 Trifolium pratense HOM05D003929 ORTHO05D004499 8.5e-107 391.7 548 46.5
Cc04_g14000 Coffea canephora HOM05D003929 ORTHO05D004499 2.5e-106 390.2 544 49.4
CANSAT80G0843 Cannabis sativa HOM05D003929 ORTHO05D004499 4.2e-106 389.4 555 47.9
PGR083G1389 Punica granatum HOM05D003929 ORTHO05D004499 4.2e-106 389.4 535 49.7
ECA232G3264 Erigeron canadensis HOM05D003929 ORTHO05D004499 9.3e-106 388.3 552 50.7
Glyma.05G037400 Glycine max HOM05D003929 ORTHO05D004499 2.1e-105 387.1 501 49.3
CAN.G781.12 Capsicum annuum HOM05D003929 ORTHO05D004499 4.3e-103 379.4 538 47.6
Hund09434 Selenicereus undatus HOM05D003929 ORTHO05D004499 4.3e-103 379.4 539 50.1
Glyma.06G182600 Glycine max HOM05D003929 ORTHO05D004499 5.7e-103 379.0 513 47.6
HanXRQChr16g0504021 Helianthus annuus HOM05D003929 ORTHO05D004499 3.7e-102 376.3 519 51.1
Lj4g0023186 Lotus japonicus HOM05D003929 ORTHO05D004499 1.8e-101 374.0 538 47.6
Lalb_Chr07g0182721 Lupinus albus HOM05D003929 ORTHO05D004499 9.1e-101 371.7 502 48.8
Medtr4g106880 Medicago truncatula HOM05D003929 ORTHO05D004499 1.5e-100 370.9 530 47.9
Phvul.009G178800 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 5.9e-100 369.0 484 49.0
MD06G1174100 Malus domestica HOM05D003929 ORTHO05D004499 3.8e-99 366.3 508 50.6
EL10Ac5g10751 Beta vulgaris HOM05D003929 ORTHO05D004499 1.9e-98 364.0 551 48.6
Nitab4.5_0009783g0030 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.9e-98 364.0 515 46.8
Nitab4.5_0007719g0020 Nicotiana tabacum HOM05D003929 ORTHO05D004499 3.2e-98 363.2 550 45.8
Sed0022246 Sechium edule HOM05D003929 ORTHO05D004499 4.6e-97 359.4 563 47.1
VMungo1309G0717 Vigna mungo HOM05D003929 ORTHO05D004499 4.6e-97 359.4 509 45.6
Migut.I00015 Erythranthe guttata HOM05D003929 ORTHO05D004499 1.1e-95 354.8 551 48.5
ClCG06G017000 Citrullus lanatus HOM05D003929 ORTHO05D004499 8.2e-94 348.6 555 45.9
Ca_21916_v3 Cicer arietinum L. HOM05D003929 ORTHO05D004499 1.1e-93 348.2 481 49.7
Solyc03g114330.3 Solanum lycopersicum HOM05D003929 ORTHO05D004499 1.4e-93 347.8 505 46.3
vmacro19383 Vaccinium macrocarpon HOM05D003929 ORTHO05D004499 1.2e-92 344.7 525 43.4
arahy.Tifrunner.gnm1.ann1.S02CG0 Arachis hypogaea HOM05D003929 ORTHO05D004499 1.0e-91 341.7 548 43.2
arahy.Tifrunner.gnm1.ann1.W2DQVT Arachis hypogaea HOM05D003929 ORTHO05D004499 1.4e-90 337.8 523 48.0
Lsat_1_v5_gn_4_75281 Lactuca sativa HOM05D003929 ORTHO05D004499 1.9e-90 337.4 544 47.6
Lj1g0005514 Lotus japonicus HOM05D003929 ORTHO05D004499 7.2e-90 335.5 517 45.6
PGR044G0511 Punica granatum HOM05D003929 ORTHO05D004499 9.4e-90 335.1 491 48.5
THA.LOC104821459 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 1.8e-88 330.9 513 47.4
arahy.Tifrunner.gnm1.ann1.R24CC5 Arachis hypogaea HOM05D003929 ORTHO05D004499 2.3e-88 330.5 553 43.4
Aa31LG11G880 Aethionema arabicum HOM05D003929 ORTHO05D004499 1.5e-87 327.8 519 44.7
Peaxi162Scf00689g00222 Petunia axillaris HOM05D003929 ORTHO05D004499 1.7e-86 324.3 542 42.6
THA.LOC104818232 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 8.2e-86 322.0 533 44.8
Lalb_Chr11g0071231 Lupinus albus HOM05D003929 ORTHO05D004499 1.4e-85 321.2 488 44.7
Ciclev10024320m.g Citrus clementina HOM05D003929 ORTHO05D004499 3.1e-85 320.1 435 50.6
AL8G39770 Arabidopsis lyrata HOM05D003929 ORTHO05D004499 1.2e-84 318.2 524 43.9
MELO3C026291.2 Cucumis melo HOM05D003929 ORTHO05D004499 1.6e-84 317.8 554 43.9
CsaV3_1G001520 Cucumis sativus L. HOM05D003929 ORTHO05D004499 1.3e-83 314.7 556 44.2
Thhalv10004017m.g Eutrema salsugineum HOM05D003929 ORTHO05D004499 1.7e-83 314.3 531 45.6
Sp2g25960 Schrenkiella parvula HOM05D003929 ORTHO05D004499 8.5e-83 312.0 507 46.0
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 4.2e-82 309.7 543 41.3
Actinidia19318 Actinidia chinensis HOM05D003929 ORTHO05D004499 1.6e-81 307.8 403 49.9
CARHR276590 Cardamine hirsuta HOM05D003929 ORTHO05D004499 2.1e-81 307.4 517 42.9
BraA06t25903Z Brassica rapa HOM05D003929 ORTHO05D004499 2.7e-81 307.0 511 44.0
AT5G62810 Arabidopsis thaliana HOM05D003929 ORTHO05D004499 4.7e-81 306.2 520 43.1
A09p07860 Brassica napus HOM05D003929 ORTHO05D004499 4.7e-81 306.2 522 43.3
Carub.0008s2353 Capsella rubella HOM05D003929 ORTHO05D004499 4.7e-81 306.2 521 43.2
Migut.D01928 Erythranthe guttata HOM05D003929 ORTHO05D004499 8.0e-81 305.4 465 47.1
SalBow5G2758 Salvia bowleyana HOM05D003929 ORTHO05D004499 1.0e-80 305.1 513 41.1
Sopen03g033430 Solanum pennellii HOM05D003929 ORTHO05D004499 1.4e-80 304.7 505 43.2
BolC9t53798H Brassica oleracea HOM05D003929 ORTHO05D004499 3.0e-80 303.5 539 42.7
C09p08860 Brassica napus HOM05D003929 ORTHO05D004499 5.2e-80 302.8 535 42.4
CDE05G2632 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 5.2e-80 302.8 509 45.2
BcaC04g23392 Brassica carinata HOM05D003929 ORTHO05D004499 8.8e-80 302.0 539 42.5
BcaB02g09694 Brassica carinata HOM05D003929 ORTHO05D004499 2.6e-79 300.4 496 45.0
A06p29570 Brassica napus HOM05D003929 ORTHO05D004499 3.3e-79 300.1 511 43.4
BraA09t36437Z Brassica rapa HOM05D003929 ORTHO05D004499 7.5e-79 298.9 506 43.9
BolC3t18647H Brassica oleracea HOM05D003929 ORTHO05D004499 1.3e-78 298.1 545 41.8
BcaC01g02523 Brassica carinata HOM05D003929 ORTHO05D004499 1.7e-78 297.7 549 42.4
Psat4g057880 Pisum sativum HOM05D003929 ORTHO05D004499 1.7e-78 297.7 332 52.1
C03p63930 Brassica napus HOM05D003929 ORTHO05D004499 2.2e-78 297.4 538 42.4
HPP92_021833 Vanilla planifolia HOM05D003929 ORTHO05D004499 2.2e-78 297.4 359 52.6
Sc04g0001820 Simmondsia chinensis HOM05D003929 ORTHO05D004499 2.4e-77 293.9 336 57.1
Actinidia33066 Actinidia chinensis HOM05D003929 ORTHO05D004499 5.3e-77 292.7 454 46.0
CDE11G0983 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 1.7e-75 287.7 545 41.1
COL.COLO4_30035 Corchorus olitorius HOM05D003929 ORTHO05D004499 5.0e-75 286.2 512 40.6
Sed0009068 Sechium edule HOM05D003929 ORTHO05D004499 2.1e-73 280.8 354 54.2
AUR62030967 Chenopodium quinoa HOM05D003929 ORTHO05D004499 6.1e-73 279.3 540 43.1
ATR0730G040 Amborella trichopoda HOM05D003929 ORTHO05D004499 1.2e-71 275.0 578 40.0
Nitab4.5_0000003g0590 Nicotiana tabacum HOM05D003929 ORTHO05D004499 5.7e-71 272.7 535 39.1
Atru.chr11.2035 Acer truncatum HOM05D003929 ORTHO05D004499 1.3e-70 271.6 495 40.2
CSS0023375 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 4.5e-68 263.1 242 66.5
SGA_v2.0_scaffold90G27941 Striga asiatica HOM05D003929 ORTHO05D004499 4.5e-68 263.1 564 38.5
Oeu024692.2 Olea europaea HOM05D003929 ORTHO05D004499 2.3e-67 260.8 287 59.2
SEGI_11105 Sequoiadendron giganteum HOM05D003929 ORTHO05D004499 1.0e-59 235.3 503 39.0
AUR62008214 Chenopodium quinoa HOM05D003929 ORTHO05D004499 8.6e-59 232.3 491 38.5
Zm00001eb356320 Zea mays HOM05D003929 ORTHO05D004499 3.6e-57 226.9 448 39.1
Psat4g209200 Pisum sativum HOM05D003929 ORTHO05D004499 5.4e-53 213.0 323 44.3
Thecc.02G250700 Theobroma cacao HOM05D003929 ORTHO05D004499 5.4e-53 213.0 413 38.0
Os05g0101200 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 5.6e-50 203.0 489 36.0
Zm00001eb267680 Zea mays HOM05D003929 ORTHO05D004499 5.6e-50 203.0 481 36.0
COL.COLO4_24172 Corchorus olitorius HOM05D003929 ORTHO05D004499 8.0e-49 199.1 317 43.2
unitig_749.g13474 Utricularia gibba HOM05D003929 ORTHO05D004499 6.0e-44 183.0 395 34.4
Zm00001eb126680 Zea mays HOM05D003929 ORTHO05D004499 2.3e-43 181.0 413 36.6
Lj9A449T48 Lonicera japonica HOM05D003929 ORTHO05D004499 2.5e-42 177.6 238 47.5
Gohir.D02G162200 Gossypium hirsutum HOM05D003929 ORTHO05D004499 3.3e-42 177.2 403 37.5
Gorai.005G182200 Gossypium raimondii HOM05D003929 ORTHO05D004499 3.6e-41 173.7 403 37.5
Oeu022163.1 Olea europaea HOM05D003929 ORTHO05D004499 6.2e-41 172.9 292 41.8
Mapoly0102s0017 Marchantia polymorpha HOM05D003929 ORTHO05D004499 5.2e-40 169.9 493 32.3
Hund02741 Selenicereus undatus HOM05D003929 ORTHO05D004499 1.7e-38 164.9 466 33.5
Gohir.A03G139300 Gossypium hirsutum HOM05D003929 ORTHO05D004499 3.7e-38 163.7 410 34.9
PSO135G0191 Papaver somniferum HOM05D003929 ORTHO05D004499 7.1e-37 159.5 190 52.6
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 3.3e-34 150.6 203 55.7
Os01g0107000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 2.1e-33 147.9 210 42.9
Pp3c9_20380 Physcomitrium patens HOM05D003929 ORTHO05D004499 1.4e-29 135.2 246 35.8
arahy.Tifrunner.gnm1.ann1.49JIZL Arachis hypogaea HOM05D003929 ORTHO05D004499 4.1e-29 133.7 241 40.2
Pp3c15_21860 Physcomitrium patens HOM05D003929 ORTHO05D004499 3.5e-28 130.6 224 41.5
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 3.5e-28 130.6 189 45.0
Cfa019127 Carpinus fangiana HOM05D003929 ORTHO05D004499 4.6e-28 130.2 130 54.6
CBR_g3508 Chara braunii HOM05D003929 ORTHO05D004499 4.3e-26 123.6 332 33.1
Lj9A449G50 Lonicera japonica HOM05D003929 ORTHO05D004499 1.6e-25 121.7 141 55.3
AagrBONN_evm.TU.Sc2ySwM_117.2261 Anthoceros agrestis HOM05D003929 ORTHO05D004499 4.7e-25 120.2 183 41.0
SHI17030 Sapria himalayana HOM05D003929 ORTHO05D004499 1.4e-21 108.6 100 59.0
PGSC0003DMG400024502 Solanum tuberosum HOM05D003929 ORTHO05D004499 2.4e-21 107.8 108 59.3
SHI17029 Sapria himalayana HOM05D003929 ORTHO05D004499 7.1e-21 106.3 149 44.3
Nitab4.5_0000866g0190 Nicotiana tabacum HOM05D003929 ORTHO05D004499 2.1e-20 104.8 126 53.2
FAN24G3310 Fragaria x ananassa HOM05D003929 ORTHO05D004499 2.7e-20 104.4 275 34.2
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 3.1e-16 90.9 265 37.7
ClCG01G013120 Citrullus lanatus HOM05D003929 ORTHO05D004499 2.0e-15 88.2 130 40.8
CBR_g10793 Chara braunii HOM05D027206 ORTHO05D004499 2.1e-12 78.2 105 50.5
Cre10.g454025 Chlamydomonas reinhardtii HOM05D003929 ORTHO05D004499 8.7e-11 72.8 84 53.6
Os05g0578000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 4.3e-10 70.5 130 43.1
MCO04G191 Micromonas commoda HOM05D003929 ORTHO05D004499 3.7e-09 67.4 53 58.5
Zm00001eb296750 Zea mays HOM05D003929 ORTHO05D004499 1.8e-08 65.1 105 44.8


User provided reference genes

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