Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g01973 Nelumbo nucifera HOM05D005204 ORTHO05D006037 0.0e+00 1347.0 674 100.0
TAR633G1027 Trochodendron aralioides HOM05D005204 ORTHO05D006037 6.0e-254 880.9 683 67.8
MBI18_g25094_MAGBIO Magnolia biondii HOM05D005204 ORTHO05D006037 1.0e-216 757.3 695 62.4
Cfa015426 Carpinus fangiana HOM05D005204 ORTHO05D006037 9.4e-215 750.7 699 57.9
QL06p010355 Quercus lobata HOM05D005204 ORTHO05D006037 5.2e-213 745.0 687 59.8
CSS0048761 Camellia sinensis var. sinensis HOM05D005204 ORTHO05D006037 1.5e-212 743.4 694 59.5
Hma1.2p1_0078F.1_g040360 Hydrangea macrophylla HOM05D005204 ORTHO05D006037 2.6e-212 742.7 678 60.2
Rhsim02G0007000 Rhododendron simsii HOM05D005204 ORTHO05D006037 2.6e-212 742.7 681 61.2
Thecc.04G288800 Theobroma cacao HOM05D005204 ORTHO05D006037 2.4e-210 736.1 693 58.6
COL.COLO4_13824 Corchorus olitorius HOM05D005204 ORTHO05D006037 1.3e-208 730.3 706 57.5
Aqoxy5G00784 Aquilegia oxysepala HOM05D005204 ORTHO05D006037 1.6e-206 723.4 624 63.5
CiPaw.02G079900 Carya illinoinensis HOM05D005204 ORTHO05D006037 1.0e-205 720.7 689 58.1
Prupe.1G123900 Prunus persica HOM05D005204 ORTHO05D006037 6.8e-205 718.0 697 57.4
vmacro15212 Vaccinium macrocarpon HOM05D005204 ORTHO05D006037 3.1e-202 709.1 691 59.0
Actinidia14280 Actinidia chinensis HOM05D005204 ORTHO05D006037 9.2e-202 707.6 635 61.1
Ciclev10004466m.g Citrus clementina HOM05D005204 ORTHO05D006037 1.5e-196 690.3 684 57.3
TWI73G0558 Tripterygium wilfordii HOM05D005204 ORTHO05D006037 1.5e-196 690.3 696 57.0
Gohir.A02G050800 Gossypium hirsutum HOM05D005204 ORTHO05D006037 2.6e-196 689.5 686 56.6
Duzib052G0651 Durio zibethinus HOM05D005204 ORTHO05D006037 9.8e-196 687.6 685 55.3
MD16G1164600 Malus domestica HOM05D005204 ORTHO05D006037 6.4e-195 684.9 677 55.5
Gohir.D02G055700 Gossypium hirsutum HOM05D005204 ORTHO05D006037 7.0e-194 681.4 692 56.2
Manes.03G200100 Manihot esculenta HOM05D005204 ORTHO05D006037 9.2e-194 681.0 683 56.4
Haze_01167 Corylus avellana HOM05D005204 ORTHO05D006037 2.7e-193 679.5 847 47.7
Atru.chr4.2898 Acer truncatum HOM05D005204 ORTHO05D006037 1.0e-192 677.6 691 55.4
Gorai.005G061700 Gossypium raimondii HOM05D005204 ORTHO05D006037 7.3e-191 671.4 692 55.8
RcHm_v2.0_Chr4g0423341 Rosa chinensis HOM05D005204 ORTHO05D006037 1.6e-190 670.2 683 55.6
Potri.010G010480 Populus trichocarpa HOM05D005204 ORTHO05D006037 4.0e-189 665.6 670 57.3
FvH4_4g18640 Fragaria vesca HOM05D005204 ORTHO05D006037 7.5e-188 661.4 692 54.0
Potri.008G219100 Populus trichocarpa HOM05D005204 ORTHO05D006037 7.5e-188 661.4 659 57.1
FAN17G1530 Fragaria x ananassa HOM05D005204 ORTHO05D006037 3.7e-187 659.1 689 54.1
FAN12G0364 Fragaria x ananassa HOM05D005204 ORTHO05D006037 1.4e-186 657.1 691 54.7
FAN07G2681 Fragaria x ananassa HOM05D005204 ORTHO05D006037 9.2e-186 654.4 689 54.3
MD13G1164900 Malus domestica HOM05D005204 ORTHO05D006037 3.5e-185 652.5 683 55.5
PSO832G0069 Papaver somniferum HOM05D005204 ORTHO05D006037 4.6e-185 652.1 720 53.6
Sabra08G0151500 Salix brachista HOM05D005204 ORTHO05D006037 6.0e-185 651.7 657 55.4
Oeu016254.2 Olea europaea HOM05D005204 ORTHO05D006037 3.0e-184 649.4 713 53.3
FAN12G3005 Fragaria x ananassa HOM05D005204 ORTHO05D006037 5.0e-184 648.7 633 57.3
arahy.Tifrunner.gnm1.ann1.02VXE5 Arachis hypogaea HOM05D005204 ORTHO05D006037 2.8e-182 642.9 691 53.5
arahy.Tifrunner.gnm1.ann1.J2HRGN Arachis hypogaea HOM05D005204 ORTHO05D006037 8.1e-182 641.3 691 53.3
PSO210G5425 Papaver somniferum HOM05D005204 ORTHO05D006037 2.3e-181 639.8 713 52.7
GSVIVG01035108001 Vitis vinifera HOM05D005204 ORTHO05D006037 5.2e-181 638.6 751 51.9
Cpa.g.sc50.164 Carica papaya HOM05D005204 ORTHO05D006037 4.4e-180 635.6 688 52.8
Sabra10G0006400 Salix brachista HOM05D005204 ORTHO05D006037 2.2e-179 633.3 671 55.1
HanXRQChr06g0173751 Helianthus annuus HOM05D005204 ORTHO05D006037 3.7e-179 632.5 688 53.6
Sc13g0003240 Simmondsia chinensis HOM05D005204 ORTHO05D006037 4.1e-178 629.0 670 54.5
Oeu031982.1 Olea europaea HOM05D005204 ORTHO05D006037 1.3e-176 624.0 720 51.8
Peaxi162Scf00646g00324 Petunia axillaris HOM05D005204 ORTHO05D006037 1.3e-176 624.0 680 53.7
EL10Ac3g06651 Beta vulgaris HOM05D005204 ORTHO05D006037 4.3e-175 619.0 708 52.7
ECA246G1739 Erigeron canadensis HOM05D005204 ORTHO05D006037 1.6e-174 617.1 670 53.4
Sed0015514 Sechium edule HOM05D005204 ORTHO05D006037 1.6e-174 617.1 681 52.9
CAN.G484.49 Capsicum annuum HOM05D005204 ORTHO05D006037 2.1e-174 616.7 697 51.1
Lj6g0026338 Lotus japonicus HOM05D005204 ORTHO05D006037 2.1e-174 616.7 689 53.4
Glyma.15G150700 Glycine max HOM05D005204 ORTHO05D006037 6.2e-174 615.1 689 53.8
PGR004G0276 Punica granatum HOM05D005204 ORTHO05D006037 1.8e-173 613.6 677 52.9
Cc03_g01540 Coffea canephora HOM05D005204 ORTHO05D006037 2.0e-172 610.1 721 51.0
VMungo1309G0885 Vigna mungo HOM05D005204 ORTHO05D006037 5.8e-172 608.6 706 52.1
Eucgr.H03961 Eucalyptus grandis HOM05D005204 ORTHO05D006037 8.4e-171 604.7 696 52.6
PGSC0003DMG400004628 Solanum tuberosum HOM05D005204 ORTHO05D006037 2.4e-170 603.2 695 51.9
Sopen12g034090 Solanum pennellii HOM05D005204 ORTHO05D006037 5.4e-170 602.1 687 51.8
Dinv29726 Davidia involucrata HOM05D005204 ORTHO05D006037 1.2e-169 600.9 591 57.2
Lalb_Chr20g0117381 Lupinus albus HOM05D005204 ORTHO05D006037 1.2e-169 600.9 674 51.3
Glyma.09G042300 Glycine max HOM05D005204 ORTHO05D006037 2.1e-169 600.1 693 52.7
Solyc12g099420.2 Solanum lycopersicum HOM05D005204 ORTHO05D006037 2.1e-169 600.1 687 51.7
Peaxi162Scf00065g01219 Petunia axillaris HOM05D005204 ORTHO05D006037 2.7e-169 599.7 685 52.7
Ca_01912_v3 Cicer arietinum L. HOM05D005204 ORTHO05D006037 1.0e-168 597.8 694 53.3
SalBow5G0318 Salvia bowleyana HOM05D005204 ORTHO05D006037 1.7e-168 597.0 692 51.0
MSTRG.24802 Avicennia marina HOM05D005204 ORTHO05D006037 8.7e-168 594.7 681 51.7
Lsat_1_v5_gn_3_21680 Lactuca sativa HOM05D005204 ORTHO05D006037 1.5e-167 594.0 679 52.4
Psat1g155920 Pisum sativum HOM05D005204 ORTHO05D006037 1.5e-167 594.0 693 51.5
Medtr2g436080 Medicago truncatula HOM05D005204 ORTHO05D006037 3.3e-167 592.8 626 55.1
Lalb_Chr18g0054391 Lupinus albus HOM05D005204 ORTHO05D006037 2.4e-165 586.6 665 51.3
Hund20528 Selenicereus undatus HOM05D005204 ORTHO05D006037 6.9e-165 585.1 679 52.1
Phvul.009G250500 Phaseolus vulgaris HOM05D005204 ORTHO05D006037 4.4e-164 582.4 727 50.1
Nitab4.5_0003767g0030 Nicotiana tabacum HOM05D005204 ORTHO05D006037 1.3e-163 580.9 692 51.4
ATR0693G386 Amborella trichopoda HOM05D005204 ORTHO05D006037 1.1e-162 577.8 673 50.2
Nn3g19294 Nelumbo nucifera HOM05D005204 ORTHO05D006037 1.9e-162 577.0 626 54.2
Lj6A680G91 Lonicera japonica HOM05D005204 ORTHO05D006037 4.2e-162 575.9 604 54.8
TPR.G28067 Trifolium pratense HOM05D005204 ORTHO05D006037 4.2e-162 575.9 630 53.5
Nitab4.5_0000695g0090 Nicotiana tabacum HOM05D005204 ORTHO05D006037 1.6e-161 573.9 699 50.8
Migut.N00079 Erythranthe guttata HOM05D005204 ORTHO05D006037 2.7e-161 573.2 693 49.2
Manes.03G198500 Manihot esculenta HOM05D005204 ORTHO05D006037 2.3e-160 570.1 646 52.0
THA.LOC104820287 Tarenaya hassleriana HOM05D005204 ORTHO05D006037 1.5e-159 567.4 674 49.9
MELO3C010685.2 Cucumis melo HOM05D005204 ORTHO05D006037 3.6e-158 562.8 627 52.2
Nitab4.5_0003484g0040 Nicotiana tabacum HOM05D005204 ORTHO05D006037 3.1e-157 559.7 686 49.3
Nitab4.5_0000570g0320 Nicotiana tabacum HOM05D005204 ORTHO05D006037 6.9e-157 558.5 705 48.4
ClCG08G017750 Citrullus lanatus HOM05D005204 ORTHO05D006037 2.2e-155 553.5 609 53.9
AT3G16730 Arabidopsis thaliana HOM05D005204 ORTHO05D006037 5.4e-154 548.9 679 49.3
SGA_v2.0_scaffold428G51532 Striga asiatica HOM05D005204 ORTHO05D006037 2.7e-153 546.6 702 47.6
AUR62015273 Chenopodium quinoa HOM05D005204 ORTHO05D006037 3.9e-152 542.7 669 50.2
AL3G29660 Arabidopsis lyrata HOM05D005204 ORTHO05D006037 1.5e-151 540.8 675 49.0
AUR62018070 Chenopodium quinoa HOM05D005204 ORTHO05D006037 1.6e-150 537.3 726 47.5
BraA05t22110Z Brassica rapa HOM05D005204 ORTHO05D006037 2.8e-150 536.6 674 48.5
A05p32870 Brassica napus HOM05D005204 ORTHO05D006037 3.7e-150 536.2 674 48.5
Carub.0003s1646 Capsella rubella HOM05D005204 ORTHO05D006037 1.1e-149 534.6 680 47.6
C05p49580 Brassica napus HOM05D005204 ORTHO05D006037 1.8e-149 533.9 675 47.7
BcaC05g28856 Brassica carinata HOM05D005204 ORTHO05D006037 3.1e-149 533.1 673 47.8
TAR362G0889 Trochodendron aralioides HOM05D005204 ORTHO05D006037 3.4e-148 529.6 506 58.3
BolC5t33716H Brassica oleracea HOM05D005204 ORTHO05D006037 5.8e-148 528.9 673 47.5
HPP92_012404 Vanilla planifolia HOM05D005204 ORTHO05D006037 9.3e-146 521.5 668 49.0
BcaB06g25769 Brassica carinata HOM05D005204 ORTHO05D006037 1.2e-145 521.2 674 47.6
Sp3g15000 Schrenkiella parvula HOM05D005204 ORTHO05D006037 2.1e-145 520.4 676 47.3
Zm00001eb322750 Zea mays HOM05D005204 ORTHO05D006037 3.9e-144 516.2 672 46.7
Aa31LG8G3820 Aethionema arabicum HOM05D005204 ORTHO05D006037 1.9e-143 513.8 684 46.3
Ah.04g153660 Amaranthus hybridus HOM05D005204 ORTHO05D006037 1.3e-142 511.1 681 46.3
BraA01t03817Z Brassica rapa HOM05D005204 ORTHO05D006037 4.8e-142 509.2 675 47.6
CsaV3_7G000690 Cucumis sativus L. HOM05D005204 ORTHO05D006037 3.1e-141 506.5 626 48.9
A01p37560 Brassica napus HOM05D005204 ORTHO05D006037 4.0e-141 506.1 675 47.4
BolC1t04731H Brassica oleracea HOM05D005204 ORTHO05D006037 6.9e-141 505.4 676 47.6
Thhalv10020220m.g Eutrema salsugineum HOM05D005204 ORTHO05D006037 2.0e-140 503.8 675 47.1
CsaV3_2G024870 Cucumis sativus L. HOM05D005204 ORTHO05D006037 5.5e-138 495.7 613 48.3
C01p47610 Brassica napus HOM05D005204 ORTHO05D006037 1.6e-137 494.2 675 47.0
BcaC09g48627 Brassica carinata HOM05D005204 ORTHO05D006037 3.7e-134 483.0 672 47.0
DCAR_030505 Daucus carota HOM05D005204 ORTHO05D006037 5.3e-133 479.2 641 44.9
CDE05G2961 Ceratophyllum demersum HOM05D005204 ORTHO05D006037 1.5e-132 477.6 674 45.0
Os07g0517300 Oryza sativa ssp. japonica HOM05D005204 ORTHO05D006037 5.1e-128 462.6 662 45.0
SHI00244 Sapria himalayana HOM05D005204 ORTHO05D006037 6.3e-126 455.7 758 41.2
DCAR_023300 Daucus carota HOM05D005204 ORTHO05D006037 9.1e-125 451.8 643 44.3
SEGI_08509 Sequoiadendron giganteum HOM05D005204 ORTHO05D006037 2.4e-109 400.6 661 40.2
Zm00001eb106060 Zea mays HOM05D005204 ORTHO05D006037 1.8e-96 357.8 590 40.3
CARHR091990 Cardamine hirsuta HOM05D005204 ORTHO05D006037 1.1e-93 348.6 426 49.5
Mapoly0137s0008 Marchantia polymorpha HOM05D005204 ORTHO05D006037 6.6e-83 312.8 704 34.7
SMO367G0335 Selaginella moellendorffii HOM05D005204 ORTHO05D006037 9.5e-82 308.9 602 37.2
Dinv44351 Davidia involucrata HOM05D005204 ORTHO05D006037 3.5e-76 290.4 687 35.2
TAR624G0487 Trochodendron aralioides HOM05D005204 ORTHO05D006037 8.6e-67 259.2 316 49.7
unitig_749.g14080 Utricularia gibba HOM05D005204 ORTHO05D006037 8.6e-67 259.2 659 32.3
TAR624G0737 Trochodendron aralioides HOM05D005204 ORTHO05D006037 1.0e-59 235.7 181 68.5
Actinidia13388 Actinidia chinensis HOM05D005204 ORTHO05D006037 8.4e-54 216.1 173 65.3
AagrBONN_evm.TU.Sc2ySwM_340.303 Anthoceros agrestis HOM05D005204 ORTHO05D006037 2.4e-48 198.0 379 37.7
ATR0693G078 Amborella trichopoda HOM05D005204 ORTHO05D006037 2.4e-45 188.0 211 52.1
CBR_g38039 Chara braunii HOM05D005204 ORTHO05D006037 9.3e-45 186.0 727 27.4
CARHR091980 Cardamine hirsuta HOM05D005204 ORTHO05D006037 2.1e-44 184.9 234 45.3
Dinv29725 Davidia involucrata HOM05D005204 ORTHO05D006037 3.1e-40 171.0 97 85.6
PGR004G0772 Punica granatum HOM05D005204 ORTHO05D006037 1.6e-28 132.1 123 58.5
PRCOL_00000998 Prasinoderma coloniale HOM05D005204 ORTHO05D006037 3.7e-25 120.9 661 26.8
DCAR_031703 Daucus carota HOM05D005204 ORTHO05D006037 8.2e-25 119.8 105 56.2
Manes.17G118669 Manihot esculenta HOM05D005204 ORTHO05D006037 3.4e-23 114.4 144 50.0
TAR362G0435 Trochodendron aralioides HOM05D005204 ORTHO05D006037 5.0e-14 84.0 89 55.1
Cre09.g408900 Chlamydomonas reinhardtii HOM05D005204 ORTHO05D006037 4.2e-13 80.9 85 50.6
ATR0296G001 Amborella trichopoda HOM05D005204 ORTHO05D006037 5.7e-10 70.5 87 51.7
Zm00001eb009560 Zea mays HOM05D005204 ORTHO05D006037 9.7e-10 69.7 114 40.4
Zm00001eb046380 Zea mays HOM05D005204 ORTHO05D006037 9.7e-10 69.7 114 40.4
Zm00001eb219840 Zea mays HOM05D005204 ORTHO05D006037 9.7e-10 69.7 114 40.4
Zm00001eb139240 Zea mays HOM05D001287 ORTHO05D006037 2.8e-09 68.2 62 53.2
Zm00001eb139230 Zea mays HOM05D005204 ORTHO05D006037 2.4e-08 65.1 110 38.2


User provided reference genes

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