Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g01969 Nelumbo nucifera HOM05D010033 ORTHO05D011583 2.7e-77 292.0 152 100.0
TAR624G0229 Trochodendron aralioides HOM05D007466 ORTHO05D002463 2.2e-18 96.3 153 41.2
MBI02_g19288_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D008499 7.0e-17 91.3 131 41.2
Sed0014854 Sechium edule HOM05D007466 ORTHO05D002463 4.3e-14 82.0 140 37.9
ClCG02G001800 Citrullus lanatus HOM05D007466 ORTHO05D002463 9.5e-14 80.9 143 33.6
Eucgr.A01722 Eucalyptus grandis HOM05D007466 ORTHO05D002463 8.0e-13 77.8 141 39.7
CSS0032012 Camellia sinensis var. sinensis HOM05D007466 ORTHO05D002463 1.8e-12 76.6 155 38.1
Psat5g265200 Pisum sativum HOM05D007466 ORTHO05D002463 2.3e-12 76.3 152 37.5
QL07p043888 Quercus lobata HOM05D010033 ORTHO05D011583 2.3e-12 76.3 136 34.6
CsaV3_7G003740 Cucumis sativus L. HOM05D007466 ORTHO05D002463 6.8e-12 74.7 139 31.7
EL10Ac2g04092 Beta vulgaris HOM05D007466 ORTHO05D002463 8.9e-12 74.3 168 33.3
CiPaw.04G117300 Carya illinoinensis HOM05D007466 ORTHO05D002463 8.9e-12 74.3 146 36.3
Haze_20563 Corylus avellana HOM05D004255 ORTHO05D011583 3.4e-11 72.4 136 30.9
MBI02_g21870_MAGBIO Magnolia biondii HOM05D003286 ORTHO05D002463 3.4e-11 72.4 164 34.8
Psat2g121080 Pisum sativum HOM05D007466 ORTHO05D002463 3.4e-11 72.4 156 34.6
TPR.G4193 Trifolium pratense HOM05D007466 ORTHO05D002463 4.4e-11 72.0 152 35.5
TAR633G2168 Trochodendron aralioides HOM05D010033 ORTHO05D011583 5.7e-11 71.6 145 31.0
Ciclev10017540m.g Citrus clementina HOM05D010033 ORTHO05D011583 7.5e-11 71.2 134 32.1
CDE05G0337 Ceratophyllum demersum HOM05D007466 ORTHO05D002463 1.3e-10 70.5 146 34.2
TWI77G0432 Tripterygium wilfordii HOM05D010033 ORTHO05D011583 2.2e-10 69.7 138 31.2
TAR633G2038 Trochodendron aralioides HOM05D010033 ORTHO05D011583 2.9e-10 69.3 154 30.5
Cfa017588 Carpinus fangiana HOM05D010033 ORTHO05D011583 3.7e-10 68.9 136 30.1
MELO3C018805.2 Cucumis melo HOM05D007466 ORTHO05D002463 4.9e-10 68.6 140 30.7
Manes.13G072500 Manihot esculenta HOM05D007466 ORTHO05D002463 8.3e-10 67.8 153 34.6
RcHm_v2.0_Chr5g0003951 Rosa chinensis HOM05D003286 ORTHO05D002463 8.3e-10 67.8 167 29.9
GSVIVG01030614001 Vitis vinifera HOM05D007466 ORTHO05D002463 1.1e-09 67.4 154 34.4
Cc00_g30040 Coffea canephora HOM05D007466 ORTHO05D002463 1.4e-09 67.0 143 33.6
PGR042G2713 Punica granatum HOM05D007466 ORTHO05D002463 2.4e-09 66.2 156 31.4
Dinv18525 Davidia involucrata HOM05D007466 ORTHO05D002463 4.1e-09 65.5 143 34.3
Actinidia01598 Actinidia chinensis HOM05D003286 ORTHO05D002463 7.0e-09 64.7 145 31.0
Cc08_g05690 Coffea canephora HOM05D000218 ORTHO05D000125 9.2e-09 64.3 148 28.4
FAN02G1346 Fragaria x ananassa HOM05D007466 ORTHO05D002463 9.2e-09 64.3 155 35.5
MBI02_g22101_MAGBIO Magnolia biondii HOM05D007003 ORTHO05D002463 9.2e-09 64.3 109 36.7
Rhsim06G0158700 Rhododendron simsii HOM05D007466 ORTHO05D002463 9.2e-09 64.3 146 34.2
Thecc.06G214200 Theobroma cacao HOM05D003286 ORTHO05D002463 9.2e-09 64.3 165 24.8
FAN09G4112 Fragaria x ananassa HOM05D007466 ORTHO05D002463 1.2e-08 63.9 155 34.8
Phvul.005G113900 Phaseolus vulgaris HOM05D007466 ORTHO05D002463 1.2e-08 63.9 152 34.2
Ciclev10017036m.g Citrus clementina HOM05D010033 ORTHO05D011583 1.6e-08 63.5 134 30.6
FvH4_6g26390 Fragaria vesca HOM05D007466 ORTHO05D002463 1.6e-08 63.5 143 33.6
FAN05G5573 Fragaria x ananassa HOM05D007466 ORTHO05D002463 1.6e-08 63.5 155 34.8
Medtr2g088760 Medicago truncatula HOM05D007466 ORTHO05D002463 1.6e-08 63.5 156 35.9
Prupe.3G131400 Prunus persica HOM05D007466 ORTHO05D002463 1.6e-08 63.5 157 33.8
RcHm_v2.0_Chr2g0159951 Rosa chinensis HOM05D007466 ORTHO05D002463 1.6e-08 63.5 155 34.2
Atru.chr3.1312 Acer truncatum HOM05D010033 ORTHO05D011583 2.0e-08 63.2 130 30.0
Nitab4.5_0005894g0010 Nicotiana tabacum HOM05D007466 ORTHO05D002463 2.0e-08 63.2 160 30.6
Atru.chr6.3156 Acer truncatum HOM05D007466 ORTHO05D002463 2.7e-08 62.8 146 34.9
FvH4_2g19820 Fragaria vesca HOM05D003286 ORTHO05D002463 2.7e-08 62.8 167 29.3
FAN14G1602 Fragaria x ananassa HOM05D007466 ORTHO05D002463 2.7e-08 62.8 155 32.9
FAN24G2961 Fragaria x ananassa HOM05D003286 ORTHO05D002463 2.7e-08 62.8 167 29.3
MD09G1246300 Malus domestica HOM05D007466 ORTHO05D002463 3.5e-08 62.4 157 32.5
Prupe.3G219500 Prunus persica HOM05D007466 ORTHO05D002463 3.5e-08 62.4 145 33.1
SHI54719 Sapria himalayana HOM05D007466 ORTHO05D002463 3.5e-08 62.4 119 36.1
Solyc07g052500.1 Solanum lycopersicum HOM05D007466 ORTHO05D002463 3.5e-08 62.4 162 28.4
Aqoxy4G01992 Aquilegia oxysepala HOM05D007466 ORTHO05D002463 4.6e-08 62.0 153 33.3
FvH4_6g43480 Fragaria vesca HOM05D007466 ORTHO05D002463 4.6e-08 62.0 155 32.9
TWI36G1433 Tripterygium wilfordii HOM05D007466 ORTHO05D002463 4.6e-08 62.0 143 33.6
VMungo1080G0180 Vigna mungo HOM05D007466 ORTHO05D002463 4.6e-08 62.0 152 33.6
DCAR_021185 Daucus carota HOM05D007466 ORTHO05D002463 5.9e-08 61.6 146 32.9
FAN05G5633 Fragaria x ananassa HOM05D007466 ORTHO05D002463 5.9e-08 61.6 136 34.6
TWI77G0814 Tripterygium wilfordii HOM05D010033 ORTHO05D011583 5.9e-08 61.6 138 29.7
Atru.chr13.539 Acer truncatum HOM05D010033 ORTHO05D011583 7.8e-08 61.2 130 30.0
Atru.chr3.1311 Acer truncatum HOM05D010033 ORTHO05D011583 7.8e-08 61.2 138 28.3
arahy.Tifrunner.gnm1.ann1.N3UINY Arachis hypogaea HOM05D007466 ORTHO05D002463 7.8e-08 61.2 156 34.0
COL.COLO4_27678 Corchorus olitorius HOM05D007466 ORTHO05D002463 7.8e-08 61.2 156 31.4
FvH4_3g02641 Fragaria vesca HOM05D000218 ORTHO05D000125 7.8e-08 61.2 155 26.5
QL08p033690 Quercus lobata HOM05D007466 ORTHO05D002463 7.8e-08 61.2 151 33.1
CAN.G921.12 Capsicum annuum HOM05D007466 ORTHO05D002463 1.0e-07 60.8 163 29.4
Oeu009440.1 Olea europaea HOM05D003286 ORTHO05D002463 1.0e-07 60.8 149 26.8
Atru.chr3.1315 Acer truncatum HOM05D010033 ORTHO05D011583 1.3e-07 60.5 98 34.7
Ca_01590_v3 Cicer arietinum L. HOM05D007466 ORTHO05D002463 1.3e-07 60.5 157 31.8
Ciclev10017724m.g Citrus clementina HOM05D007466 ORTHO05D002463 1.3e-07 60.5 146 32.2
Prupe.4G026000 Prunus persica HOM05D003286 ORTHO05D002463 1.3e-07 60.5 173 27.7
TWI36G0490 Tripterygium wilfordii HOM05D026273 ORTHO05D011583 1.3e-07 60.5 137 29.9
FAN15G1751 Fragaria x ananassa HOM05D003286 ORTHO05D002463 1.7e-07 60.1 167 27.5
MD17G1239100 Malus domestica HOM05D007466 ORTHO05D002463 1.7e-07 60.1 146 32.9
QL93p0073_0716 Quercus lobata HOM05D003286 ORTHO05D002463 1.7e-07 60.1 163 27.6
FAN02G3170 Fragaria x ananassa HOM05D007466 ORTHO05D002463 2.3e-07 59.7 134 33.6
Lalb_Chr22g0349591 Lupinus albus HOM05D007466 ORTHO05D002463 2.3e-07 59.7 164 30.5
Sabra17G0024500 Salix brachista HOM05D007466 ORTHO05D002463 2.3e-07 59.7 144 32.6
Gorai.008G172300 Gossypium raimondii HOM05D007466 ORTHO05D002463 3.0e-07 59.3 155 31.6
QL05p075142 Quercus lobata HOM05D003286 ORTHO05D002463 3.0e-07 59.3 157 28.7
Oeu048075.1 Olea europaea HOM05D007466 ORTHO05D002463 3.9e-07 58.9 144 29.9
Duzib235G0679 Durio zibethinus HOM05D003286 ORTHO05D002463 5.0e-07 58.5 165 24.8
Duzib251G0094 Durio zibethinus HOM05D007466 ORTHO05D002463 5.0e-07 58.5 143 32.9
Gohir.A12G156100 Gossypium hirsutum HOM05D007466 ORTHO05D002463 5.0e-07 58.5 132 33.3
Gohir.D12G159200 Gossypium hirsutum HOM05D007466 ORTHO05D002463 5.0e-07 58.5 156 31.4
Manes.16G012200 Manihot esculenta HOM05D003286 ORTHO05D002463 5.0e-07 58.5 165 26.1
TWI77G0433 Tripterygium wilfordii HOM05D010033 ORTHO05D011583 5.0e-07 58.5 134 30.6
Manes.16G012000 Manihot esculenta HOM05D000218 ORTHO05D000125 6.6e-07 58.2 149 28.2
TWI74G0061 Tripterygium wilfordii HOM05D010033 ORTHO05D011583 6.6e-07 58.2 138 29.7
MD10G1314800 Malus domestica HOM05D003286 ORTHO05D002463 8.6e-07 57.8 173 27.2
Manes.13G072400 Manihot esculenta HOM05D007466 ORTHO05D002463 8.6e-07 57.8 157 32.5
Nn1g07029 Nelumbo nucifera HOM05D007466 ORTHO05D002463 8.6e-07 57.8 141 31.9
Potri.017G037600 Populus trichocarpa HOM05D007466 ORTHO05D002463 8.6e-07 57.8 144 30.6
Cfa014433 Carpinus fangiana HOM05D007466 ORTHO05D002463 1.5e-06 57.0 153 32.0
Lsat_1_v5_gn_5_103881 Lactuca sativa HOM05D007466 ORTHO05D002463 1.9e-06 56.6 140 33.6
Thecc.10G122300 Theobroma cacao HOM05D003286 ORTHO05D002463 1.9e-06 56.6 166 26.5
Sc06g0006090 Simmondsia chinensis HOM05D007466 ORTHO05D002463 2.5e-06 56.2 160 31.2
Glyma.13G143800 Glycine max HOM05D010033 ORTHO05D011583 3.3e-06 55.8 136 27.2
HanXRQChr14g0459021 Helianthus annuus HOM05D007466 ORTHO05D002463 3.3e-06 55.8 154 31.2
Manes.17G035200 Manihot esculenta HOM05D003286 ORTHO05D002463 3.3e-06 55.8 165 26.7
Nn1g08164 Nelumbo nucifera HOM05D003286 ORTHO05D002463 3.3e-06 55.8 165 24.2
Phvul.007G149500 Phaseolus vulgaris HOM05D010033 ORTHO05D011583 3.3e-06 55.8 136 26.5
BcaB05g24378 Brassica carinata HOM05D000218 ORTHO05D000125 4.3e-06 55.5 150 29.3
FAN27G1731 Fragaria x ananassa HOM05D003286 ORTHO05D002463 4.3e-06 55.5 157 26.8
Hma1.2p1_0158F.1_g069790 Hydrangea macrophylla HOM05D003286 ORTHO05D002463 4.3e-06 55.5 150 28.7
SEGI_16078 Sequoiadendron giganteum HOM05D000218 ORTHO05D000125 4.3e-06 55.5 150 25.3
CiPaw.09G087100 Carya illinoinensis HOM05D003286 ORTHO05D002463 5.6e-06 55.1 162 24.7
Glyma.17G042200 Glycine max HOM05D000218 ORTHO05D000125 5.6e-06 55.1 150 28.7
AagrBONN_evm.TU.Sc2ySwM_368.2460 Anthoceros agrestis HOM05D000218 ORTHO05D000125 7.3e-06 54.7 150 28.7
MELO3C025417.2 Cucumis melo HOM05D000218 ORTHO05D000125 9.5e-06 54.3 149 26.8
Dinv20018 Davidia involucrata HOM05D000218 ORTHO05D000125 9.5e-06 54.3 143 26.6


User provided reference genes

Program Settings