Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn020s41497 Nelumbo nucifera HOM05D005015 ORTHO05D005696 4.5e-13 76.6 38 100.0
Nn1g01955 Nelumbo nucifera HOM05D005015 ORTHO05D005696 4.5e-13 76.6 38 100.0
Nn2g15007 Nelumbo nucifera HOM05D005015 ORTHO05D005696 4.5e-13 76.6 38 100.0
CSS0020927 Camellia sinensis var. sinensis HOM05D005015 ORTHO05D005696 1.4e-11 71.6 38 92.1
Ah.10g027630 Amaranthus hybridus HOM05D005015 ORTHO05D005696 2.5e-11 70.9 38 89.5
Ah.10g027770 Amaranthus hybridus HOM05D005015 ORTHO05D005696 2.5e-11 70.9 38 89.5
Hma1.2p1_2181F.1_g316260 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 4.2e-11 70.1 38 89.5
Hma1.2p1_2181F.1_g316275 Hydrangea macrophylla HOM05D005015 ORTHO05D005696 4.2e-11 70.1 38 89.5
Potri.013G137900 Populus trichocarpa HOM05D005015 ORTHO05D005696 4.2e-11 70.1 38 89.5
SabraPtG0000800 Salix brachista HOM05D000743 ORTHO05D000580 4.2e-11 70.1 38 89.5
HanXRQChr00c0272g0573041 Helianthus annuus HOM05D005015 ORTHO05D005696 7.1e-11 69.3 38 89.5
HanXRQChr00c0313g0573431 Helianthus annuus HOM05D000743 ORTHO05D000580 7.1e-11 69.3 38 89.5
HanXRQChr04g0099301 Helianthus annuus HOM05D005015 ORTHO05D005696 7.1e-11 69.3 38 89.5
HanXRQChr04g0120711 Helianthus annuus HOM05D000743 ORTHO05D000580 7.1e-11 69.3 38 89.5
HanXRQChr08g0210221 Helianthus annuus HOM05D000743 ORTHO05D000580 7.1e-11 69.3 38 89.5
HanXRQChr10g0282491 Helianthus annuus HOM05D000743 ORTHO05D000580 7.1e-11 69.3 38 89.5
HanXRQChr11g0326651 Helianthus annuus HOM05D000743 ORTHO05D000580 7.1e-11 69.3 38 89.5
HanXRQCPg0579841 Helianthus annuus HOM05D000743 ORTHO05D000580 7.1e-11 69.3 38 89.5
Gohir.A05G314033 Gossypium hirsutum HOM05D005015 ORTHO05D005696 9.3e-11 68.9 38 89.5
MELO3C000827.2 Cucumis melo HOM05D005015 ORTHO05D005696 1.2e-10 68.6 38 89.5
MELO3C027845.2 Cucumis melo HOM05D005015 ORTHO05D005696 1.2e-10 68.6 38 89.5
Lsat_1_v5_gn_1_38680 Lactuca sativa HOM05D005015 ORTHO05D005696 1.6e-10 68.2 38 86.8
CARHR281880 Cardamine hirsuta HOM05D005015 ORTHO05D005696 2.1e-10 67.8 37 89.2
Gohir.A11G101400 Gossypium hirsutum HOM05D005015 ORTHO05D005696 2.1e-10 67.8 38 86.8
Solyc00g500322.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 2.1e-10 67.8 37 89.2
Solyc00g500333.1 Solanum lycopersicum HOM05D005015 ORTHO05D005696 2.1e-10 67.8 37 89.2
ATCG00130 Arabidopsis thaliana HOM05D005015 ORTHO05D005696 2.7e-10 67.4 37 89.2
Eucgr.H02991 Eucalyptus grandis HOM05D005015 ORTHO05D005696 2.7e-10 67.4 38 84.2
Gohir.A07G153850 Gossypium hirsutum HOM05D005015 ORTHO05D005696 2.7e-10 67.4 38 86.8
PGR111G0021 Punica granatum HOM05D005015 ORTHO05D005696 3.5e-10 67.0 38 84.2
Sed0007367 Sechium edule HOM05D005015 ORTHO05D005696 3.5e-10 67.0 38 86.8
Sed0007878 Sechium edule HOM05D005015 ORTHO05D005696 3.5e-10 67.0 38 86.8
Sed0025514 Sechium edule HOM05D005015 ORTHO05D005696 3.5e-10 67.0 38 86.8
Atru.chr7.976 Acer truncatum HOM05D005015 ORTHO05D005696 4.6e-10 66.6 37 89.2
Aa31csc39G190 Aethionema arabicum HOM05D005015 ORTHO05D005696 4.6e-10 66.6 37 86.5
Gohir.D06G126233 Gossypium hirsutum HOM05D005015 ORTHO05D005696 4.6e-10 66.6 36 91.7
LjContig00489g0021854 Lotus japonicus HOM05D005015 ORTHO05D005696 4.6e-10 66.6 38 86.8
Peaxi162Scf00027g00003 Petunia axillaris HOM05D005015 ORTHO05D005696 4.6e-10 66.6 37 89.2
Peaxi162Scf00211g00235 Petunia axillaris HOM05D000743 ORTHO05D005696 4.6e-10 66.6 37 89.2
Peaxi162Scf00379g00087 Petunia axillaris HOM05D005015 ORTHO05D005696 4.6e-10 66.6 37 89.2
EL10As12g24014 Beta vulgaris HOM05D000743 ORTHO05D000580 6.0e-10 66.2 38 84.2
Duzib147G0859 Durio zibethinus HOM05D004473 ORTHO05D005696 6.0e-10 66.2 37 89.2
CAN.G1648.11 Capsicum annuum HOM05D000216 ORTHO05D005696 1.0e-09 65.5 37 86.5
Gohir.D03G128101 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.0e-09 65.5 38 84.2
Gorai.003G134800 Gossypium raimondii HOM05D005015 ORTHO05D005696 1.0e-09 65.5 38 84.2
Nitab4.5_0000435g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 1.0e-09 65.5 38 81.6
CAN.G386.8 Capsicum annuum HOM05D000216 ORTHO05D001131 1.3e-09 65.1 37 83.8
Gohir.D05G292450 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.3e-09 65.1 38 84.2
Gorai.009G308800 Gossypium raimondii HOM05D005015 ORTHO05D005696 1.3e-09 65.1 38 84.2
Nitab4.5_0005637g0090 Nicotiana tabacum HOM05D005015 ORTHO05D005696 1.3e-09 65.1 37 86.5
Sc09g0006540 Simmondsia chinensis HOM05D005573 ORTHO05D005696 1.3e-09 65.1 38 84.2
Gohir.A07G129651 Gossypium hirsutum HOM05D005015 ORTHO05D005696 1.8e-09 64.7 35 91.4
BNapus_Darmor_BZH_scaffold_253p00020 Brassica napus HOM05D005015 ORTHO05D005696 2.3e-09 64.3 38 81.6
BolC2t10574H Brassica oleracea HOM05D005015 ORTHO05D005696 2.3e-09 64.3 38 81.6
BolSC29t60569H Brassica oleracea HOM05D005015 ORTHO05D005696 2.3e-09 64.3 38 81.6
BolSC37t60772H Brassica oleracea HOM05D005015 ORTHO05D005696 2.3e-09 64.3 38 81.6
BolSC45t60880H Brassica oleracea HOM05D005015 ORTHO05D005696 2.3e-09 64.3 38 81.6
BolSC46t60983H Brassica oleracea HOM05D005015 ORTHO05D005696 2.3e-09 64.3 38 81.6
BraSC140t45592Z Brassica rapa HOM05D005015 ORTHO05D005696 2.3e-09 64.3 38 81.6
BraSC140t45595Z Brassica rapa HOM05D005015 ORTHO05D005696 2.3e-09 64.3 38 81.6
BraSC179t45790Z Brassica rapa HOM05D005015 ORTHO05D005696 2.3e-09 64.3 38 81.6
BraSC25t45885Z Brassica rapa HOM05D005015 ORTHO05D005696 2.3e-09 64.3 38 81.6
BraSC58t46477Z Brassica rapa HOM05D005015 ORTHO05D005696 2.3e-09 64.3 38 81.6
CAN.G612.5 Capsicum annuum HOM05D005015 ORTHO05D005696 2.3e-09 64.3 37 83.8
Cpa.g.sc30.79 Carica papaya HOM05D005015 ORTHO05D005696 2.3e-09 64.3 38 84.2
CAN.G877.4 Capsicum annuum HOM05D005015 ORTHO05D005696 3.0e-09 63.9 37 83.8
DCAR_032470 Daucus carota HOM05D005015 ORTHO05D005696 3.0e-09 63.9 38 81.6
Glyma.12G231900 Glycine max HOM05D005015 ORTHO05D005696 3.0e-09 63.9 37 86.5
LjContig00318g0021444 Lotus japonicus HOM05D005015 ORTHO05D005696 3.0e-09 63.9 37 86.5
Gorai.010G147200 Gossypium raimondii HOM05D005015 ORTHO05D005696 3.9e-09 63.5 36 86.1
Nitab4.5_0027992g0020 Nicotiana tabacum HOM05D005015 ORTHO05D005696 3.9e-09 63.5 37 83.8
Gohir.A10G154675 Gossypium hirsutum HOM05D005015 ORTHO05D005696 6.7e-09 62.8 38 81.6
arahy.Tifrunner.gnm1.ann1.6U43FV Arachis hypogaea HOM05D005015 ORTHO05D005696 8.7e-09 62.4 37 83.8
Medtr1g109420 Medicago truncatula HOM05D005015 ORTHO05D005696 8.7e-09 62.4 37 83.8
Hund03959 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.7e-09 62.4 38 78.9
Hund10285 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.7e-09 62.4 38 78.9
Hund19316 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.7e-09 62.4 38 78.9
Hund27454 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.7e-09 62.4 38 78.9
Hund27640 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.7e-09 62.4 38 78.9
Hund27652 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.7e-09 62.4 38 78.9
Hund27672 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.7e-09 62.4 38 78.9
Hund27697 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.7e-09 62.4 38 78.9
Hund27742 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.7e-09 62.4 38 78.9
Hund27807 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.7e-09 62.4 38 78.9
Hund27824 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.7e-09 62.4 38 78.9
Hund27931 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.7e-09 62.4 38 78.9
Hund27946 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.7e-09 62.4 38 78.9
Hund27994 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.7e-09 62.4 38 78.9
Hund28016 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.7e-09 62.4 38 78.9
Hund28060 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.7e-09 62.4 38 78.9
Hund28129 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.7e-09 62.4 38 78.9
Hund28142 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.7e-09 62.4 38 78.9
Hund28151 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.7e-09 62.4 38 78.9
Hund28161 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.7e-09 62.4 38 78.9
Hund28177 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.7e-09 62.4 38 78.9
Hund28187 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.7e-09 62.4 38 78.9
Hund28210 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.7e-09 62.4 38 78.9
Hund28258 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.7e-09 62.4 38 78.9
Hund28390 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.7e-09 62.4 38 78.9
Hund28502 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.7e-09 62.4 38 78.9
Hund28650 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.7e-09 62.4 38 78.9
Hund28906 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.7e-09 62.4 38 78.9
Hund29887 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.7e-09 62.4 38 78.9
Hund30205 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.7e-09 62.4 38 78.9
Hund30312 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.7e-09 62.4 38 78.9
Hund30436 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.7e-09 62.4 38 78.9
Hund30552 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.7e-09 62.4 38 78.9
Hund30554 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.7e-09 62.4 38 78.9
Hund30665 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.7e-09 62.4 38 78.9
Hund31017 Selenicereus undatus HOM05D005015 ORTHO05D005696 8.7e-09 62.4 38 78.9
RcHm_v2.0_CPg0502451 Rosa chinensis HOM05D005015 ORTHO05D005696 1.1e-08 62.0 38 78.9
Lalb_Chr03g0042651 Lupinus albus HOM05D005015 ORTHO05D005696 2.5e-08 60.8 37 81.1
Lalb_Chr08g0232621 Lupinus albus HOM05D005015 ORTHO05D005696 2.5e-08 60.8 37 81.1
MD08G1060700 Malus domestica HOM05D005015 ORTHO05D005696 2.5e-08 60.8 38 73.7
Solyc02g012020.3 Solanum lycopersicum HOM05D005015 ORTHO05D005696 2.5e-08 60.8 37 81.1
BraSC143t45677Z Brassica rapa HOM05D005015 ORTHO05D005696 3.3e-08 60.5 36 80.6
BolSC45t60933H Brassica oleracea HOM05D005015 ORTHO05D005696 4.3e-08 60.1 39 79.5
Gorai.011G122900 Gossypium raimondii HOM05D005015 ORTHO05D005696 4.3e-08 60.1 38 78.9
Lj1P433T25 Lonicera japonica HOM05D005015 ORTHO05D005696 4.3e-08 60.1 38 78.9
Lj2C1239T52 Lonicera japonica HOM05D005015 ORTHO05D005696 4.3e-08 60.1 38 78.9
Medtr4g071050 Medicago truncatula HOM05D005015 ORTHO05D005696 4.3e-08 60.1 37 81.1
Psat0s2288g0080 Pisum sativum HOM05D000743 ORTHO05D000580 4.3e-08 60.1 38 78.9
arahy.Tifrunner.gnm1.ann1.XNS64L Arachis hypogaea HOM05D001387 ORTHO05D005696 5.7e-08 59.7 37 81.1
TPR.G15298 Trifolium pratense HOM05D005015 ORTHO05D005696 5.7e-08 59.7 37 78.4
TWI34G0268 Tripterygium wilfordii HOM05D005015 ORTHO05D005696 5.7e-08 59.7 38 78.9
HanXRQChr00c0300g0573221 Helianthus annuus HOM05D005015 ORTHO05D005696 7.4e-08 59.3 33 87.9
Psat0s1586g0080 Pisum sativum HOM05D000743 ORTHO05D000580 9.6e-08 58.9 38 76.3
Psat0s2754g0200 Pisum sativum HOM05D000743 ORTHO05D000580 1.3e-07 58.5 38 76.3
Psat1g003840 Pisum sativum HOM05D000743 ORTHO05D000580 1.3e-07 58.5 38 76.3
Psat6g219360 Pisum sativum HOM05D000743 ORTHO05D000580 1.3e-07 58.5 38 76.3
arahy.Tifrunner.gnm1.ann1.VXR7WZ Arachis hypogaea HOM05D005015 ORTHO05D005696 3.7e-07 57.0 37 75.7
Gorai.011G235400 Gossypium raimondii HOM05D005015 ORTHO05D005696 4.8e-07 56.6 32 87.5
Lsat_1_v5_gn_3_117960 Lactuca sativa HOM05D005015 ORTHO05D005696 4.8e-07 56.6 36 77.8
BolSC49t61201H Brassica oleracea HOM05D005015 ORTHO05D005696 6.2e-07 56.2 34 79.4
Medtr0002s0540 Medicago truncatula HOM05D005015 ORTHO05D005696 2.4e-06 54.3 38 71.1
EL10Ac5g12103 Beta vulgaris HOM05D005015 ORTHO05D005696 3.1e-06 53.9 34 76.5
Gohir.D10G209550 Gossypium hirsutum HOM05D005015 ORTHO05D005696 6.9e-06 52.8 31 83.9


User provided reference genes

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