Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g01943 Nelumbo nucifera HOM05D006359 ORTHO05D007871 1.6e-114 416.0 201 100.0
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 2.4e-49 199.5 156 61.5
arahy.Tifrunner.gnm1.ann1.PN0BWC Arachis hypogaea HOM05D006359 ORTHO05D007871 6.6e-47 191.4 147 64.6
BcaB04g21383 Brassica carinata HOM05D006359 ORTHO05D007871 1.2e-45 187.2 135 65.2
TAR375G0743 Trochodendron aralioides HOM05D006359 ORTHO05D007871 1.2e-45 187.2 104 81.7
HPP92_002576 Vanilla planifolia HOM05D004915 ORTHO05D006048 2.3e-44 183.0 126 69.0
CANSAT56G0993 Cannabis sativa HOM05D006359 ORTHO05D007871 6.8e-44 181.4 101 79.2
CiPaw.06G019000 Carya illinoinensis HOM05D006359 ORTHO05D007871 8.9e-44 181.0 110 72.7
RcHm_v2.0_Chr1g0384091 Rosa chinensis HOM05D006359 ORTHO05D007871 8.9e-44 181.0 103 78.6
BNapus_Darmor_BZH_scaffold_129p00020 Brassica napus HOM05D006359 ORTHO05D007871 2.0e-43 179.9 135 63.0
Cpa.g.sc39.69 Carica papaya HOM05D006359 ORTHO05D007871 3.4e-43 179.1 118 69.5
Manes.08G162700 Manihot esculenta HOM05D006359 ORTHO05D007871 4.4e-43 178.7 104 77.9
Cfa015873 Carpinus fangiana HOM05D006359 ORTHO05D007871 7.5e-43 177.9 108 72.2
CDE02G3318 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 7.5e-43 177.9 130 63.1
AUR62028171 Chenopodium quinoa HOM05D006359 ORTHO05D007871 7.5e-43 177.9 110 70.0
Aqoxy3G02089 Aquilegia oxysepala HOM05D006359 ORTHO05D007871 1.3e-42 177.2 109 72.5
FAN05G5659 Fragaria x ananassa HOM05D006359 ORTHO05D007871 1.3e-42 177.2 99 78.8
FvH4_7g33890 Fragaria vesca HOM05D006359 ORTHO05D007871 2.2e-42 176.4 110 71.8
MELO3C005389.2 Cucumis melo HOM05D006359 ORTHO05D007871 2.9e-42 176.0 106 76.4
FAN02G0767 Fragaria x ananassa HOM05D006359 ORTHO05D007871 2.9e-42 176.0 112 70.5
CsaV3_5G005640 Cucumis sativus L. HOM05D006359 ORTHO05D007871 4.9e-42 175.3 106 76.4
Dinv29162 Davidia involucrata HOM05D006359 ORTHO05D007871 1.1e-41 174.1 109 72.5
Eucgr.K00090 Eucalyptus grandis HOM05D006359 ORTHO05D007871 1.1e-41 174.1 100 76.0
Prupe.2G325400 Prunus persica HOM05D006359 ORTHO05D007871 1.1e-41 174.1 99 74.7
FAN03G1870 Fragaria x ananassa HOM05D006359 ORTHO05D007871 1.4e-41 173.7 110 71.8
PGR042G0220 Punica granatum HOM05D006359 ORTHO05D007871 1.4e-41 173.7 99 75.8
MD07G1308200 Malus domestica HOM05D006359 ORTHO05D007871 1.9e-41 173.3 110 68.2
Sed0002409 Sechium edule HOM05D006359 ORTHO05D007871 1.9e-41 173.3 106 74.5
Sed0025211 Sechium edule HOM05D006359 ORTHO05D007871 1.9e-41 173.3 106 75.5
THA.LOC104827217 Tarenaya hassleriana HOM05D006359 ORTHO05D007871 1.9e-41 173.3 100 76.0
TWI74G0194 Tripterygium wilfordii HOM05D006359 ORTHO05D007871 1.9e-41 173.3 103 73.8
ATR0829G118 Amborella trichopoda HOM05D006359 ORTHO05D007871 2.4e-41 172.9 111 72.1
CSS0011317 Camellia sinensis var. sinensis HOM05D006359 ORTHO05D007871 2.4e-41 172.9 104 76.0
Glyma.01G228400 Glycine max HOM05D006359 ORTHO05D007871 2.4e-41 172.9 104 74.0
Atru.chr12.1978 Acer truncatum HOM05D006359 ORTHO05D007871 3.2e-41 172.6 109 70.6
arahy.Tifrunner.gnm1.ann1.K5IGPH Arachis hypogaea HOM05D006359 ORTHO05D007871 3.2e-41 172.6 104 74.0
PGSC0003DMG402000567 Solanum tuberosum HOM05D006359 ORTHO05D007871 3.2e-41 172.6 102 74.5
SGA_v2.0_scaffold44G16885 Striga asiatica HOM05D006359 ORTHO05D007871 3.2e-41 172.6 100 77.0
Actinidia18703 Actinidia chinensis HOM05D006359 ORTHO05D007871 4.1e-41 172.2 100 77.0
AL3G12700 Arabidopsis lyrata HOM05D006359 ORTHO05D007871 4.1e-41 172.2 109 70.6
Carub.0003s0225 Capsella rubella HOM05D006359 ORTHO05D007871 4.1e-41 172.2 109 72.5
Ca_23151_v3 Cicer arietinum L. HOM05D006359 ORTHO05D007871 4.1e-41 172.2 104 73.1
AT3G03100 Arabidopsis thaliana HOM05D006359 ORTHO05D007871 5.4e-41 171.8 109 70.6
CAN.G303.77 Capsicum annuum HOM05D006359 ORTHO05D007871 5.4e-41 171.8 102 77.5
Migut.F00100 Erythranthe guttata HOM05D006359 ORTHO05D007871 5.4e-41 171.8 100 78.0
Glyma.11G011200 Glycine max HOM05D006359 ORTHO05D007871 5.4e-41 171.8 104 74.0
Sopen03g027690 Solanum pennellii HOM05D006359 ORTHO05D007871 5.4e-41 171.8 102 74.5
SGA_v2.0_scaffold18G08507 Striga asiatica HOM05D006359 ORTHO05D007871 5.4e-41 171.8 100 77.0
CARHR077120 Cardamine hirsuta HOM05D006359 ORTHO05D007871 7.0e-41 171.4 109 70.6
SalBow4G0660 Salvia bowleyana HOM05D006359 ORTHO05D007871 7.0e-41 171.4 100 77.0
SalBow4G2166 Salvia bowleyana HOM05D006359 ORTHO05D007871 7.0e-41 171.4 100 77.0
Phvul.002G039500 Phaseolus vulgaris HOM05D006359 ORTHO05D007871 9.2e-41 171.0 104 74.0
Sabra19G0057200 Salix brachista HOM05D006359 ORTHO05D007871 1.2e-40 170.6 101 72.3
arahy.Tifrunner.gnm1.ann1.N39QDT Arachis hypogaea HOM05D006359 ORTHO05D007871 1.6e-40 170.2 109 70.6
PSO782G4768 Papaver somniferum HOM05D006359 ORTHO05D007871 1.6e-40 170.2 99 74.7
BolC1t05848H Brassica oleracea HOM05D006359 ORTHO05D007871 2.1e-40 169.9 120 65.0
BraA01t04593Z Brassica rapa HOM05D006359 ORTHO05D007871 2.1e-40 169.9 120 65.0
PSO063G2711 Papaver somniferum HOM05D006359 ORTHO05D007871 2.1e-40 169.9 99 72.7
Potri.019G051400 Populus trichocarpa HOM05D006359 ORTHO05D007871 2.1e-40 169.9 103 72.8
Lalb_Chr05g0211271 Lupinus albus HOM05D006359 ORTHO05D007871 2.7e-40 169.5 102 74.5
MD01G1235400 Malus domestica HOM05D006359 ORTHO05D007871 2.7e-40 169.5 99 72.7
Medtr8g009960 Medicago truncatula HOM05D006359 ORTHO05D007871 2.7e-40 169.5 104 71.2
Thhalv10021682m.g Eutrema salsugineum HOM05D006359 ORTHO05D007871 3.5e-40 169.1 109 69.7
HanXRQChr12g0381881 Helianthus annuus HOM05D006359 ORTHO05D007871 4.6e-40 168.7 109 70.6
THA.LOC104820881 Tarenaya hassleriana HOM05D006359 ORTHO05D007871 4.6e-40 168.7 109 69.7
Cc02_g00330 Coffea canephora HOM05D006359 ORTHO05D007871 6.0e-40 168.3 111 70.3
Sp3g02140 Schrenkiella parvula HOM05D006359 ORTHO05D007871 7.8e-40 167.9 109 68.8
TPR.G17376 Trifolium pratense HOM05D006359 ORTHO05D007871 7.8e-40 167.9 100 74.0
TPR.G779 Trifolium pratense HOM05D006359 ORTHO05D007871 7.8e-40 167.9 100 74.0
GSVIVG01024414001 Vitis vinifera HOM05D006359 ORTHO05D007871 7.8e-40 167.9 111 69.4
Aa31LG5G13580 Aethionema arabicum HOM05D006359 ORTHO05D007871 1.0e-39 167.5 109 68.8
EL10Ac3g05084 Beta vulgaris HOM05D006359 ORTHO05D007871 1.0e-39 167.5 101 73.3
HPP92_002574 Vanilla planifolia HOM05D004915 ORTHO05D006048 1.0e-39 167.5 118 67.8
A05p44080 Brassica napus HOM05D006359 ORTHO05D007871 1.3e-39 167.2 120 64.2
unitig_0.g2431 Utricularia gibba HOM05D001194 ORTHO05D007871 1.3e-39 167.2 100 74.0
C05p63700 Brassica napus HOM05D006359 ORTHO05D007871 3.0e-39 166.0 120 63.3
BolC5t35039H Brassica oleracea HOM05D006359 ORTHO05D007871 3.0e-39 166.0 120 63.3
BraSC90t46703Z Brassica rapa HOM05D006359 ORTHO05D007871 3.0e-39 166.0 120 63.3
Thecc.09G264700 Theobroma cacao HOM05D006359 ORTHO05D007871 3.0e-39 166.0 109 70.6
Lsat_1_v5_gn_3_105561 Lactuca sativa HOM05D006359 ORTHO05D007871 3.9e-39 165.6 104 74.0
CDE11G0363 Ceratophyllum demersum HOM05D006359 ORTHO05D007871 5.1e-39 165.2 94 76.6
Ciclev10022653m.g Citrus clementina HOM05D006359 ORTHO05D007871 5.1e-39 165.2 103 68.9
Lj3g0004693 Lotus japonicus HOM05D006359 ORTHO05D007871 6.6e-39 164.9 104 70.2
Zm00001eb025210 Zea mays HOM05D006359 ORTHO05D007871 8.6e-39 164.5 103 71.8
COL.COLO4_25307 Corchorus olitorius HOM05D006359 ORTHO05D007871 1.1e-38 164.1 109 69.7
Os10g0579300 Oryza sativa ssp. japonica HOM05D006359 ORTHO05D007871 1.1e-38 164.1 115 65.2
Zm00001eb224990 Zea mays HOM05D006359 ORTHO05D007871 1.5e-38 163.7 103 71.8
Gohir.D09G101400 Gossypium hirsutum HOM05D006359 ORTHO05D007871 2.5e-38 162.9 109 67.0
Gorai.006G118800 Gossypium raimondii HOM05D006359 ORTHO05D007871 2.5e-38 162.9 109 67.0
Gohir.A09G104700 Gossypium hirsutum HOM05D006359 ORTHO05D007871 4.3e-38 162.2 109 67.0
VMungo1215G3178 Vigna mungo HOM05D006359 ORTHO05D007871 4.3e-38 162.2 118 66.9
ECA246G3947 Erigeron canadensis HOM05D006359 ORTHO05D007871 7.3e-38 161.4 104 69.2
vmacro10188 Vaccinium macrocarpon HOM05D006359 ORTHO05D007871 9.5e-38 161.0 124 65.3
QL09p024508 Quercus lobata HOM05D006359 ORTHO05D007871 1.2e-37 160.6 103 68.9
Duzib168G1989 Durio zibethinus HOM05D006359 ORTHO05D007871 1.6e-37 160.2 109 67.0
Sc13g0010840 Simmondsia chinensis HOM05D006359 ORTHO05D007871 1.6e-37 160.2 85 82.4
Duzib150G0394 Durio zibethinus HOM05D006359 ORTHO05D007871 4.7e-37 158.7 109 67.0
FAN10G1928 Fragaria x ananassa HOM05D006359 ORTHO05D007871 1.1e-36 157.5 108 71.3
Hma1.2p1_0758F.1_g213680 Hydrangea macrophylla HOM05D006359 ORTHO05D007871 1.4e-36 157.1 125 65.6
arahy.Tifrunner.gnm1.ann1.0WZ6H1 Arachis hypogaea HOM05D006359 ORTHO05D007871 3.1e-36 156.0 121 61.2
Psat4g215600 Pisum sativum HOM05D006359 ORTHO05D007871 5.2e-36 155.2 94 71.3
AUR62002057 Chenopodium quinoa HOM05D006359 ORTHO05D007871 1.2e-35 154.1 110 61.8
Rhsim09G0212500 Rhododendron simsii HOM05D006359 ORTHO05D007871 1.2e-35 154.1 109 67.0
FAN03G2552 Fragaria x ananassa HOM05D006359 ORTHO05D007871 3.4e-35 152.5 106 67.9
Nitab4.5_0000021g0410 Nicotiana tabacum HOM05D006359 ORTHO05D007871 4.4e-35 152.1 81 82.7
Nitab4.5_0011930g0020 Nicotiana tabacum HOM05D006359 ORTHO05D007871 9.9e-35 151.0 102 70.6
Hund09785 Selenicereus undatus HOM05D006359 ORTHO05D007871 2.2e-34 149.8 104 65.4
Peaxi162Scf00745g00854 Petunia axillaris HOM05D006359 ORTHO05D007871 3.7e-34 149.1 102 68.6
FAN01G1102 Fragaria x ananassa HOM05D006359 ORTHO05D007871 8.3e-34 147.9 117 61.5
Hma1.2p1_0758F.1_g213690 Hydrangea macrophylla HOM05D006359 ORTHO05D007871 6.6e-31 138.3 111 64.9
Lj3A888T26 Lonicera japonica HOM05D006359 ORTHO05D007871 8.6e-31 137.9 75 81.3
TPR.G4015 Trifolium pratense HOM05D006359 ORTHO05D007871 8.6e-31 137.9 100 63.0
AagrBONN_evm.TU.Sc2ySwM_344.5152 Anthoceros agrestis HOM05D006359 ORTHO05D007871 1.4e-28 130.6 159 45.3
Haze_00616 Corylus avellana HOM05D006359 ORTHO05D007871 6.4e-26 121.7 84 65.5
Gorai.009G080000 Gossypium raimondii HOM05D006359 ORTHO05D007871 1.9e-25 120.2 104 54.8
Mapoly0001s0046 Marchantia polymorpha HOM05D006359 ORTHO05D007871 1.0e-23 114.4 101 52.5
ClCG01G005390 Citrullus lanatus HOM05D006359 ORTHO05D007871 2.3e-23 113.2 75 70.7
Pp3c16_5910 Physcomitrium patens HOM05D006359 ORTHO05D007871 4.3e-22 109.0 154 37.7
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 8.1e-21 104.8 95 54.7
CBR_g23185 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-20 104.4 95 50.5
Gohir.A05G075800 Gossypium hirsutum HOM05D006359 ORTHO05D007871 1.9e-17 93.6 120 42.5
Actinidia33791 Actinidia chinensis HOM05D006359 ORTHO05D007871 1.6e-16 90.5 68 64.7
SMO331G0004 Selaginella moellendorffii HOM05D006359 ORTHO05D007871 1.0e-15 87.8 76 52.6
MCO08G302 Micromonas commoda HOM05D006359 ORTHO05D007871 3.0e-15 86.3 55 63.6
Cre11.g467767 Chlamydomonas reinhardtii HOM05D006359 ORTHO05D007871 2.1e-13 80.1 99 39.4
Haze_26508 Corylus avellana HOM05D006359 ORTHO05D007871 3.5e-08 62.8 82 42.7
PRCOL_00004481 Prasinoderma coloniale HOM05D006359 ORTHO05D007871 9.6e-06 54.7 70 40.0


User provided reference genes

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