Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g01928 Nelumbo nucifera HOM05D000237 ORTHO05D016966 4.0e-27 124.0 63 100.0
Nn1g08949 Nelumbo nucifera HOM05D000237 ORTHO05D001145 1.4e-08 62.4 36 83.3
Dinv27267 Davidia involucrata HOM05D000237 ORTHO05D001145 2.5e-08 61.6 36 83.3
Hma1.2p1_1121F.1_g259240 Hydrangea macrophylla HOM05D000237 ORTHO05D001145 2.5e-08 61.6 36 83.3
Nn5g28443 Nelumbo nucifera HOM05D000237 ORTHO05D001145 4.2e-08 60.8 34 85.3
Hund27726 Selenicereus undatus HOM05D000237 ORTHO05D001145 5.5e-08 60.5 34 82.4
Hund27730 Selenicereus undatus HOM05D000237 ORTHO05D001145 5.5e-08 60.5 34 82.4
Cc10_g13710 Coffea canephora HOM05D000237 ORTHO05D001145 7.2e-08 60.1 37 78.4
GSVIVG01008803001 Vitis vinifera HOM05D000237 ORTHO05D001145 7.2e-08 60.1 34 85.3
CSS0035162 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D001145 9.4e-08 59.7 36 77.8
PSO170G0738 Papaver somniferum HOM05D000237 ORTHO05D001145 9.4e-08 59.7 36 77.8
PGR044G1651 Punica granatum HOM05D000237 ORTHO05D001145 1.6e-07 58.9 34 76.5
ATR1001G006 Amborella trichopoda HOM05D000237 ORTHO05D001145 2.1e-07 58.5 44 65.9
MD08G1160400 Malus domestica HOM05D000237 ORTHO05D016966 2.1e-07 58.5 34 82.4
MD15G1133500 Malus domestica HOM05D000237 ORTHO05D001145 2.1e-07 58.5 34 82.4
PSO528G0205 Papaver somniferum HOM05D000237 ORTHO05D001145 2.1e-07 58.5 36 75.0
TAR625G0414 Trochodendron aralioides HOM05D000237 ORTHO05D001145 2.1e-07 58.5 37 73.0
Eucgr.E01004 Eucalyptus grandis HOM05D000237 ORTHO05D001145 2.7e-07 58.2 37 73.0
Prupe.1G489100 Prunus persica HOM05D000237 ORTHO05D001145 2.7e-07 58.2 34 82.4
TAR381G0839 Trochodendron aralioides HOM05D000237 ORTHO05D001145 2.7e-07 58.2 37 73.0
Lsat_1_v5_gn_6_110320 Lactuca sativa HOM05D000237 ORTHO05D001145 3.6e-07 57.8 36 75.0
Lj4A681T42 Lonicera japonica HOM05D000237 ORTHO05D001145 3.6e-07 57.8 37 73.0
Lj7A351T51 Lonicera japonica HOM05D000237 ORTHO05D001145 3.6e-07 57.8 36 77.8
TAR628G1575 Trochodendron aralioides HOM05D000237 ORTHO05D001145 3.6e-07 57.8 38 76.3
Actinidia03426 Actinidia chinensis HOM05D000237 ORTHO05D001145 4.6e-07 57.4 36 77.8
Actinidia33634 Actinidia chinensis HOM05D000237 ORTHO05D001145 4.6e-07 57.4 36 77.8
ClCG02G000290 Citrullus lanatus HOM05D000237 ORTHO05D001145 4.6e-07 57.4 41 68.3
Hma1.2p1_0880F.1_g231820 Hydrangea macrophylla HOM05D000237 ORTHO05D001145 4.6e-07 57.4 36 77.8
MBI06_g35215_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D001145 4.6e-07 57.4 34 82.4
Cfa002181 Carpinus fangiana HOM05D000237 ORTHO05D001145 6.1e-07 57.0 38 68.4
CiPaw.03G118300 Carya illinoinensis HOM05D000237 ORTHO05D001145 6.1e-07 57.0 39 69.2
Actinidia21274 Actinidia chinensis HOM05D000237 ORTHO05D001145 7.9e-07 56.6 34 76.5
THA.LOC104812080 Tarenaya hassleriana HOM05D000237 ORTHO05D001145 7.9e-07 56.6 50 58.0
Aqoxy6G00306 Aquilegia oxysepala HOM05D000237 ORTHO05D001145 1.0e-06 56.2 36 72.2
CAN.G405.12 Capsicum annuum HOM05D000237 ORTHO05D001145 1.0e-06 56.2 36 72.2
MELO3C023218.2 Cucumis melo HOM05D000237 ORTHO05D001145 1.0e-06 56.2 41 65.9
CsaV3_2G019550 Cucumis sativus L. HOM05D000237 ORTHO05D001145 1.0e-06 56.2 41 65.9
Potri.005G067000 Populus trichocarpa HOM05D000237 ORTHO05D001145 1.0e-06 56.2 38 68.4
PGR119G2061 Punica granatum HOM05D000237 ORTHO05D001145 1.0e-06 56.2 38 68.4
Sc09g0002250 Simmondsia chinensis HOM05D000237 ORTHO05D001145 1.0e-06 56.2 34 73.5
Solyc04g057930.4 Solanum lycopersicum HOM05D000237 ORTHO05D001145 1.0e-06 56.2 36 75.0
Sopen04g025790 Solanum pennellii HOM05D000237 ORTHO05D001145 1.0e-06 56.2 36 75.0
PGSC0003DMG400025316 Solanum tuberosum HOM05D000237 ORTHO05D001145 1.0e-06 56.2 36 75.0
THA.LOC104809993 Tarenaya hassleriana HOM05D000237 ORTHO05D001145 1.0e-06 56.2 50 58.0
Aqoxy5G02306 Aquilegia oxysepala HOM05D000237 ORTHO05D001145 1.4e-06 55.8 36 66.7
AT1G77280 Arabidopsis thaliana HOM05D000237 ORTHO05D001145 1.4e-06 55.8 50 56.0
Carub.0002s2416 Capsella rubella HOM05D000237 ORTHO05D001145 1.4e-06 55.8 50 56.0
CARHR070770 Cardamine hirsuta HOM05D000237 ORTHO05D001145 1.4e-06 55.8 50 56.0
Ciclev10000358m.g Citrus clementina HOM05D000237 ORTHO05D001145 1.4e-06 55.8 36 75.0
Haze_25326 Corylus avellana HOM05D000237 ORTHO05D001145 1.4e-06 55.8 34 76.5
Thhalv10018181m.g Eutrema salsugineum HOM05D000237 ORTHO05D001145 1.4e-06 55.8 50 56.0
Lj1g0026751 Lotus japonicus HOM05D000237 ORTHO05D001145 1.4e-06 55.8 38 71.1
Potri.002G077900 Populus trichocarpa HOM05D000237 ORTHO05D001145 1.4e-06 55.8 37 70.3
Sed0028036 Sechium edule HOM05D000237 ORTHO05D001145 1.4e-06 55.8 39 66.7
Actinidia15210 Actinidia chinensis HOM05D000237 ORTHO05D001145 1.8e-06 55.5 34 79.4
AL2G37470 Arabidopsis lyrata HOM05D000237 ORTHO05D001145 1.8e-06 55.5 50 56.0
CSS0014669 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D001145 1.8e-06 55.5 36 75.0
CSS0019791 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D001145 1.8e-06 55.5 36 75.0
Cpa.g.sc2692.2 Carica papaya HOM05D000237 ORTHO05D001145 1.8e-06 55.5 38 68.4
Duzib093G0562 Durio zibethinus HOM05D000237 ORTHO05D001145 1.8e-06 55.5 34 79.4
ECA247G2302 Erigeron canadensis HOM05D000237 ORTHO05D001145 1.8e-06 55.5 36 69.4
Lsat_1_v5_gn_1_7980 Lactuca sativa HOM05D000237 ORTHO05D001145 1.8e-06 55.5 36 69.4
Manes.02G168800 Manihot esculenta HOM05D000237 ORTHO05D001145 1.8e-06 55.5 34 76.5
Manes.18G082900 Manihot esculenta HOM05D000237 ORTHO05D001145 1.8e-06 55.5 34 73.5
Hund17349 Selenicereus undatus HOM05D000237 ORTHO05D001145 1.8e-06 55.5 34 76.5
Thecc.08G133500 Theobroma cacao HOM05D000237 ORTHO05D001145 1.8e-06 55.5 34 79.4
TWI31G1053 Tripterygium wilfordii HOM05D000237 ORTHO05D001145 1.8e-06 55.5 39 66.7
TWI79G1001 Tripterygium wilfordii HOM05D000237 ORTHO05D001145 1.8e-06 55.5 39 66.7
Aa31LG4G7290 Aethionema arabicum HOM05D000237 ORTHO05D001145 2.3e-06 55.1 50 54.0
CANSAT01G0479 Cannabis sativa HOM05D000237 ORTHO05D001145 2.3e-06 55.1 38 68.4
Glyma.06G155500 Glycine max HOM05D000237 ORTHO05D001145 2.3e-06 55.1 38 68.4
Oeu028672.1 Olea europaea HOM05D000237 ORTHO05D016966 2.3e-06 55.1 35 77.1
RcHm_v2.0_Chr2g0122201 Rosa chinensis HOM05D000237 ORTHO05D001145 2.3e-06 55.1 38 65.8
SGA_v2.0_scaffold52G18916 Striga asiatica HOM05D000237 ORTHO05D001145 2.3e-06 55.1 34 76.5
GSVIVG01026462001 Vitis vinifera HOM05D000237 ORTHO05D001145 2.3e-06 55.1 37 67.6
MSTRG.1409 Avicennia marina HOM05D000237 ORTHO05D001145 3.0e-06 54.7 36 72.2
MSTRG.25356 Avicennia marina HOM05D000237 ORTHO05D001145 3.0e-06 54.7 34 76.5
CiPaw.15G031000 Carya illinoinensis HOM05D000237 ORTHO05D001145 3.0e-06 54.7 34 76.5
Ciclev10000480m.g Citrus clementina HOM05D000237 ORTHO05D001145 3.0e-06 54.7 39 66.7
Duzib041G0258 Durio zibethinus HOM05D000237 ORTHO05D001145 3.0e-06 54.7 34 79.4
Duzib116G0620 Durio zibethinus HOM05D000237 ORTHO05D001145 3.0e-06 54.7 35 74.3
FvH4_2g27940 Fragaria vesca HOM05D000237 ORTHO05D001145 3.0e-06 54.7 34 73.5
FAN15G0936 Fragaria x ananassa HOM05D000237 ORTHO05D001145 3.0e-06 54.7 34 73.5
FAN15G3712 Fragaria x ananassa HOM05D000237 ORTHO05D001145 3.0e-06 54.7 34 73.5
FAN24G2197 Fragaria x ananassa HOM05D000237 ORTHO05D001145 3.0e-06 54.7 34 73.5
FAN27G2116 Fragaria x ananassa HOM05D000237 ORTHO05D001145 3.0e-06 54.7 34 73.5
Glyma.04G210500 Glycine max HOM05D000237 ORTHO05D001145 3.0e-06 54.7 38 68.4
Gohir.A02G110800 Gossypium hirsutum HOM05D000237 ORTHO05D001145 3.0e-06 54.7 34 79.4
Gohir.D03G063200 Gossypium hirsutum HOM05D000237 ORTHO05D001145 3.0e-06 54.7 34 79.4
Gorai.013G108200 Gossypium raimondii HOM05D000237 ORTHO05D001145 3.0e-06 54.7 34 79.4
Nitab4.5_0000317g0200 Nicotiana tabacum HOM05D000237 ORTHO05D001145 3.0e-06 54.7 36 75.0
Nitab4.5_0009478g0010 Nicotiana tabacum HOM05D000237 ORTHO05D001145 3.0e-06 54.7 36 75.0
Potri.005G182800 Populus trichocarpa HOM05D000237 ORTHO05D001145 3.0e-06 54.7 34 76.5
QL09p032269 Quercus lobata HOM05D000237 ORTHO05D001145 3.0e-06 54.7 34 76.5
QL09p032284 Quercus lobata HOM05D000237 ORTHO05D001145 3.0e-06 54.7 34 76.5
Rhsim11G0071900 Rhododendron simsii HOM05D000237 ORTHO05D001145 3.0e-06 54.7 34 79.4
Sabra05G0055100 Salix brachista HOM05D000237 ORTHO05D001145 3.0e-06 54.7 38 65.8
Sp5g32450 Schrenkiella parvula HOM05D000237 ORTHO05D001145 3.0e-06 54.7 48 56.2
TWI34G0093 Tripterygium wilfordii HOM05D000237 ORTHO05D001145 3.0e-06 54.7 34 73.5
TAR376G0837 Trochodendron aralioides HOM05D000237 ORTHO05D001145 3.0e-06 54.7 36 72.2
Actinidia20027 Actinidia chinensis HOM05D000237 ORTHO05D001145 3.9e-06 54.3 38 65.8
arahy.Tifrunner.gnm1.ann1.0IT1NR Arachis hypogaea HOM05D000237 ORTHO05D001145 3.9e-06 54.3 38 65.8
arahy.Tifrunner.gnm1.ann1.36KCAZ Arachis hypogaea HOM05D000237 ORTHO05D001145 3.9e-06 54.3 38 65.8
EL10Ac4g09619 Beta vulgaris HOM05D000237 ORTHO05D001145 3.9e-06 54.3 34 70.6
BcaC08g47622 Brassica carinata HOM05D000237 ORTHO05D001145 3.9e-06 54.3 40 65.0
A07p42820 Brassica napus HOM05D000237 ORTHO05D001145 3.9e-06 54.3 40 65.0
C06p51440 Brassica napus HOM05D000237 ORTHO05D001145 3.9e-06 54.3 40 65.0
BolC6t40162H Brassica oleracea HOM05D000237 ORTHO05D001145 3.9e-06 54.3 40 65.0
BraA07t31803Z Brassica rapa HOM05D000237 ORTHO05D001145 3.9e-06 54.3 40 65.0
AUR62000511 Chenopodium quinoa HOM05D000237 ORTHO05D001145 3.9e-06 54.3 34 70.6
AUR62006856 Chenopodium quinoa HOM05D000237 ORTHO05D001145 3.9e-06 54.3 34 70.6
Medtr3g096555 Medicago truncatula HOM05D000237 ORTHO05D001145 3.9e-06 54.3 38 65.8
Psat5g060720 Pisum sativum HOM05D000237 ORTHO05D001145 3.9e-06 54.3 38 65.8
RcHm_v2.0_Chr6g0296761 Rosa chinensis HOM05D000237 ORTHO05D001145 3.9e-06 54.3 34 73.5
TPR.G28194 Trifolium pratense HOM05D000237 ORTHO05D001145 3.9e-06 54.3 38 65.8
VMungo1309G0883 Vigna mungo HOM05D000237 ORTHO05D001145 3.9e-06 54.3 38 68.4
BcaB05g25030 Brassica carinata HOM05D000237 ORTHO05D001145 5.1e-06 53.9 41 61.0
FAN20G0226 Fragaria x ananassa HOM05D000237 ORTHO05D001145 5.1e-06 53.9 34 73.5
SalBow7G0658 Salvia bowleyana HOM05D000237 ORTHO05D001145 5.1e-06 53.9 34 79.4
SalBow7G0660 Salvia bowleyana HOM05D000237 ORTHO05D001145 5.1e-06 53.9 34 79.4
SGA_v2.0_scaffold119G32797 Striga asiatica HOM05D000237 ORTHO05D001145 5.1e-06 53.9 35 71.4
A02p21200 Brassica napus HOM05D000237 ORTHO05D001145 6.7e-06 53.5 41 61.0
C02p34420 Brassica napus HOM05D000237 ORTHO05D001145 6.7e-06 53.5 41 61.0
Cfa018423 Carpinus fangiana HOM05D000237 ORTHO05D001145 6.7e-06 53.5 34 73.5
COL.COLO4_35819 Corchorus olitorius HOM05D000237 ORTHO05D001145 6.7e-06 53.5 37 62.2
Migut.N01818 Erythranthe guttata HOM05D000237 ORTHO05D001145 6.7e-06 53.5 35 68.6
Eucgr.I00126 Eucalyptus grandis HOM05D000237 ORTHO05D001145 6.7e-06 53.5 35 68.6
FvH4_1g24700 Fragaria vesca HOM05D000237 ORTHO05D001145 6.7e-06 53.5 38 63.2
FAN19G1791 Fragaria x ananassa HOM05D000237 ORTHO05D001145 6.7e-06 53.5 38 63.2
FAN28G2239 Fragaria x ananassa HOM05D000237 ORTHO05D001145 6.7e-06 53.5 38 63.2
SGA_v2.0_scaffold24G10417 Striga asiatica HOM05D000237 ORTHO05D001145 6.7e-06 53.5 34 73.5
Atru.chr4.974 Acer truncatum HOM05D000237 ORTHO05D001145 8.8e-06 53.1 39 61.5
MSTRG.5057 Avicennia marina HOM05D000237 ORTHO05D001145 8.8e-06 53.1 35 71.4
CANSAT25G2606 Cannabis sativa HOM05D000237 ORTHO05D001145 8.8e-06 53.1 34 73.5
CiPaw.04G080000 Carya illinoinensis HOM05D000237 ORTHO05D001145 8.8e-06 53.1 37 67.6
Ca_16977_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 8.8e-06 53.1 33 75.8
ClCG08G006040 Citrullus lanatus HOM05D000237 ORTHO05D001145 8.8e-06 53.1 34 73.5
Cc02_g29390 Coffea canephora HOM05D000237 ORTHO05D001145 8.8e-06 53.1 35 71.4
MELO3C008469.2 Cucumis melo HOM05D000237 ORTHO05D001145 8.8e-06 53.1 34 73.5
CsaV3_6G034030 Cucumis sativus L. HOM05D000237 ORTHO05D001145 8.8e-06 53.1 34 73.5
DCAR_014365 Daucus carota HOM05D000237 ORTHO05D001145 8.8e-06 53.1 36 66.7
Dinv01951 Davidia involucrata HOM05D000237 ORTHO05D001145 8.8e-06 53.1 34 73.5
ECA246G1840 Erigeron canadensis HOM05D000237 ORTHO05D001145 8.8e-06 53.1 36 66.7
Lalb_Chr12g0203041 Lupinus albus HOM05D000237 ORTHO05D001145 8.8e-06 53.1 67 44.8
Peaxi162Scf00066g00314 Petunia axillaris HOM05D000237 ORTHO05D001145 8.8e-06 53.1 36 72.2
Prupe.4G275600 Prunus persica HOM05D000237 ORTHO05D001145 8.8e-06 53.1 34 70.6
Sed0022076 Sechium edule HOM05D000237 ORTHO05D001145 8.8e-06 53.1 34 73.5


User provided reference genes

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