Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g01918 Nelumbo nucifera HOM05D005120 ORTHO05D006174 1.4e-285 985.7 526 100.0
Nn3g19343 Nelumbo nucifera HOM05D005120 ORTHO05D006174 3.5e-217 758.4 499 81.0
TAR374G0846 Trochodendron aralioides HOM05D005120 ORTHO05D006174 5.8e-212 741.1 529 78.4
Cfa012552 Carpinus fangiana HOM05D005120 ORTHO05D006174 4.8e-206 721.5 488 78.7
MBI04_g36023_MAGBIO Magnolia biondii HOM05D005120 ORTHO05D006174 1.2e-201 706.8 513 76.0
CiPaw.11G101100 Carya illinoinensis HOM05D005120 ORTHO05D006174 2.3e-200 702.6 488 76.2
Eucgr.E01259 Eucalyptus grandis HOM05D005120 ORTHO05D006174 1.5e-199 699.9 460 80.9
Rhsim11G0027600 Rhododendron simsii HOM05D005120 ORTHO05D006174 1.3e-198 696.8 479 77.7
Aqoxy7G00879 Aquilegia oxysepala HOM05D005120 ORTHO05D006174 1.6e-198 696.4 457 81.8
Duzib205G1724 Durio zibethinus HOM05D005120 ORTHO05D006174 1.6e-198 696.4 531 71.6
GSVIVG01029984001 Vitis vinifera HOM05D005120 ORTHO05D006174 8.2e-198 694.1 445 82.9
Solyc08g076290.3 Solanum lycopersicum HOM05D005120 ORTHO05D006174 3.1e-197 692.2 479 77.9
CANSAT21G0750 Cannabis sativa HOM05D005120 ORTHO05D006174 4.1e-197 691.8 532 71.6
Nitab4.5_0000543g0120 Nicotiana tabacum HOM05D005120 ORTHO05D006174 4.1e-197 691.8 464 80.6
Potri.003G099600 Populus trichocarpa HOM05D005120 ORTHO05D006174 5.3e-197 691.4 467 78.8
PGR042G0860 Punica granatum HOM05D005120 ORTHO05D006174 5.3e-197 691.4 459 80.0
Sopen08g024900 Solanum pennellii HOM05D005120 ORTHO05D006174 1.2e-196 690.3 472 78.4
Prupe.5G024500 Prunus persica HOM05D005120 ORTHO05D006174 2.0e-196 689.5 499 74.5
Thecc.03G314000 Theobroma cacao HOM05D005120 ORTHO05D006174 2.0e-196 689.5 501 73.3
Haze_08107 Corylus avellana HOM05D005120 ORTHO05D006174 3.4e-196 688.7 542 70.3
MD06G1023600 Malus domestica HOM05D005120 ORTHO05D006174 2.2e-195 686.0 502 74.3
Gorai.003G186700 Gossypium raimondii HOM05D005120 ORTHO05D006174 2.9e-195 685.6 524 71.2
Gohir.D03G177466 Gossypium hirsutum HOM05D005120 ORTHO05D006174 6.5e-195 684.5 524 71.2
Manes.17G006500 Manihot esculenta HOM05D005120 ORTHO05D006174 1.1e-194 683.7 466 78.1
TWI60G0565 Tripterygium wilfordii HOM05D005120 ORTHO05D006174 1.9e-194 682.9 476 77.5
Oeu042231.1 Olea europaea HOM05D005120 ORTHO05D006174 3.2e-194 682.2 465 77.0
Migut.A00586 Erythranthe guttata HOM05D005120 ORTHO05D006174 5.5e-194 681.4 504 73.6
PGSC0003DMG402009291 Solanum tuberosum HOM05D005120 ORTHO05D006174 7.2e-194 681.0 436 83.0
vmacro00236 Vaccinium macrocarpon HOM05D005120 ORTHO05D006174 7.2e-194 681.0 449 79.1
Dinv29029 Davidia involucrata HOM05D005120 ORTHO05D006174 9.4e-194 680.6 432 83.1
Gohir.A03G000018 Gossypium hirsutum HOM05D005120 ORTHO05D006174 9.4e-194 680.6 468 77.4
Lj4g0011317 Lotus japonicus HOM05D005120 ORTHO05D006174 9.4e-194 680.6 464 78.0
Sc07g0008440 Simmondsia chinensis HOM05D005120 ORTHO05D006174 9.4e-194 680.6 465 77.4
THA.LOC104798500 Tarenaya hassleriana HOM05D005120 ORTHO05D006174 9.4e-194 680.6 469 78.0
CARHR031430 Cardamine hirsuta HOM05D005120 ORTHO05D006174 4.6e-193 678.3 456 79.2
Cpa.g.sc757.1 Carica papaya HOM05D005120 ORTHO05D006174 6.1e-193 677.9 522 71.5
Glyma.16G095100 Glycine max HOM05D005120 ORTHO05D006174 6.1e-193 677.9 464 77.4
Actinidia27272 Actinidia chinensis HOM05D005120 ORTHO05D006174 1.0e-192 677.2 512 71.5
Sabra03G0067700 Salix brachista HOM05D005120 ORTHO05D006174 1.4e-192 676.8 468 78.2
Lalb_Chr16g0391911 Lupinus albus HOM05D005120 ORTHO05D006174 2.3e-192 676.0 493 74.4
Thhalv10007389m.g Eutrema salsugineum HOM05D005120 ORTHO05D006174 3.0e-192 675.6 460 78.3
FAN08G2640 Fragaria x ananassa HOM05D005120 ORTHO05D006174 3.0e-192 675.6 527 71.3
Medtr8g070830 Medicago truncatula HOM05D005120 ORTHO05D006174 3.0e-192 675.6 464 77.2
Lsat_1_v5_gn_6_17781 Lactuca sativa HOM05D005120 ORTHO05D006174 3.9e-192 675.2 469 76.5
Cc08_g03980 Coffea canephora HOM05D005120 ORTHO05D006174 5.1e-192 674.9 465 77.0
Nitab4.5_0006395g0010 Nicotiana tabacum HOM05D005120 ORTHO05D006174 5.1e-192 674.9 421 85.3
BcaC05g27233 Brassica carinata HOM05D005120 ORTHO05D006174 8.8e-192 674.1 464 77.8
C05p31470 Brassica napus HOM05D005120 ORTHO05D006174 1.5e-191 673.3 464 77.6
BolC5t31871H Brassica oleracea HOM05D005120 ORTHO05D006174 1.5e-191 673.3 464 77.6
BcaB03g13768 Brassica carinata HOM05D005120 ORTHO05D006174 2.0e-191 672.9 472 76.7
BraA09t38958Z Brassica rapa HOM05D005120 ORTHO05D006174 2.0e-191 672.9 464 77.8
Ah.07g201110 Amaranthus hybridus HOM05D005120 ORTHO05D006174 7.4e-191 671.0 468 76.7
BraA05t21413Z Brassica rapa HOM05D005120 ORTHO05D006174 7.4e-191 671.0 480 75.0
FvH4_5g23540 Fragaria vesca HOM05D005120 ORTHO05D006174 7.4e-191 671.0 500 73.2
Aa31LG2G13920 Aethionema arabicum HOM05D005120 ORTHO05D006174 9.7e-191 670.6 460 78.5
AUR62018612 Chenopodium quinoa HOM05D005120 ORTHO05D006174 9.7e-191 670.6 509 71.7
AL1G46150 Arabidopsis lyrata HOM05D005120 ORTHO05D006174 1.3e-190 670.2 457 78.8
SGA_v2.0_scaffold42G16013 Striga asiatica HOM05D005120 ORTHO05D006174 1.3e-190 670.2 468 76.1
Carub.0001s3040 Capsella rubella HOM05D005120 ORTHO05D006174 1.7e-190 669.8 464 77.6
FAN18G1216 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.7e-190 669.8 500 73.0
QL12p000342 Quercus lobata HOM05D005120 ORTHO05D006174 2.8e-190 669.1 438 80.8
RcHm_v2.0_Chr7g0212851 Rosa chinensis HOM05D005120 ORTHO05D006174 3.7e-190 668.7 500 72.8
BcaC05g27930 Brassica carinata HOM05D005120 ORTHO05D006174 4.8e-190 668.3 472 75.6
AT1G32080 Arabidopsis thaliana HOM05D005120 ORTHO05D006174 6.3e-190 667.9 459 78.4
FAN04G0205 Fragaria x ananassa HOM05D005120 ORTHO05D006174 6.3e-190 667.9 528 70.3
Peaxi162Scf00408g00023 Petunia axillaris HOM05D005120 ORTHO05D006174 8.2e-190 667.5 413 85.2
FAN18G2593 Fragaria x ananassa HOM05D005120 ORTHO05D006174 1.4e-189 666.8 498 72.7
Sp1g27750 Schrenkiella parvula HOM05D005120 ORTHO05D006174 1.4e-189 666.8 457 77.9
COL.COLO4_16896 Corchorus olitorius HOM05D005120 ORTHO05D006174 1.8e-189 666.4 434 81.1
Lj8A318T44 Lonicera japonica HOM05D005120 ORTHO05D006174 4.1e-189 665.2 488 73.6
CDE06G0533 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 1.5e-188 663.3 474 75.3
SalBow1G1967 Salvia bowleyana HOM05D005120 ORTHO05D006174 2.6e-188 662.5 481 73.8
Atru.chr6.1569 Acer truncatum HOM05D005120 ORTHO05D006174 4.5e-188 661.8 456 78.1
MSTRG.11896 Avicennia marina HOM05D005120 ORTHO05D006174 1.0e-187 660.6 460 75.9
HanXRQChr02g0050021 Helianthus annuus HOM05D005120 ORTHO05D006174 1.3e-187 660.2 526 69.4
Sed0007636 Sechium edule HOM05D005120 ORTHO05D006174 1.7e-187 659.8 484 74.0
MELO3C026723.2 Cucumis melo HOM05D005120 ORTHO05D006174 2.2e-187 659.4 530 70.2
VMungo0251G1066 Vigna mungo HOM05D005120 ORTHO05D006174 2.9e-187 659.1 422 81.8
CsaV3_3G030430 Cucumis sativus L. HOM05D005120 ORTHO05D006174 5.0e-187 658.3 530 70.2
Phvul.003G274000 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 5.0e-187 658.3 434 80.2
Hund14388 Selenicereus undatus HOM05D005120 ORTHO05D006174 1.1e-186 657.1 526 68.4
Psat4g111760 Pisum sativum HOM05D005120 ORTHO05D006174 2.5e-186 656.0 464 75.6
Os01g0511600 Oryza sativa ssp. japonica HOM05D005120 ORTHO05D006174 3.2e-186 655.6 431 78.7
CAN.G773.16 Capsicum annuum HOM05D005120 ORTHO05D006174 7.2e-186 654.4 428 82.0
ClCG07G002270 Citrullus lanatus HOM05D005120 ORTHO05D006174 1.2e-185 653.7 445 78.2
arahy.Tifrunner.gnm1.ann1.H9FFKJ Arachis hypogaea HOM05D005120 ORTHO05D006174 6.1e-185 651.4 469 75.3
BcaB07g32869 Brassica carinata HOM05D005120 ORTHO05D006174 7.9e-185 651.0 463 76.2
EL10Ac5g11981 Beta vulgaris HOM05D005120 ORTHO05D006174 1.4e-184 650.2 468 74.6
PSO717G0011 Papaver somniferum HOM05D005120 ORTHO05D006174 5.1e-184 648.3 506 71.5
A05p25290 Brassica napus HOM05D005120 ORTHO05D006174 1.1e-183 647.1 466 74.7
TPR.G6179 Trifolium pratense HOM05D005120 ORTHO05D006174 1.1e-183 647.1 495 71.7
ECA233G2235 Erigeron canadensis HOM05D005120 ORTHO05D006174 3.3e-183 645.6 477 72.3
Aa31LG2G11060 Aethionema arabicum HOM05D005120 ORTHO05D006174 5.7e-183 644.8 422 81.0
C05p39360 Brassica napus HOM05D005120 ORTHO05D006174 9.7e-183 644.0 458 75.1
BolC5t32672H Brassica oleracea HOM05D005120 ORTHO05D006174 9.7e-183 644.0 458 75.1
Sed0003941 Sechium edule HOM05D005120 ORTHO05D006174 4.8e-182 641.7 536 67.9
Ca_22546_v3 Cicer arietinum L. HOM05D005120 ORTHO05D006174 1.8e-181 639.8 406 82.8
AUR62007376 Chenopodium quinoa HOM05D005120 ORTHO05D006174 4.1e-181 638.6 405 82.0
ATR0829G037 Amborella trichopoda HOM05D005120 ORTHO05D006174 9.1e-181 637.5 447 75.6
SGA_v2.0_scaffold89G27426 Striga asiatica HOM05D005120 ORTHO05D006174 9.1e-181 637.5 433 77.8
arahy.Tifrunner.gnm1.ann1.PMQ83Q Arachis hypogaea HOM05D005120 ORTHO05D006174 7.7e-180 634.4 426 78.9
Glyma.01G009900 Glycine max HOM05D005120 ORTHO05D006174 8.5e-179 630.9 421 78.6
PSO675G2578 Papaver somniferum HOM05D005120 ORTHO05D006174 1.5e-178 630.2 505 70.3
Zm00001eb025160 Zea mays HOM05D005120 ORTHO05D006174 1.2e-177 627.1 494 69.0
A09p34100 Brassica napus HOM05D005120 ORTHO05D006174 4.7e-177 625.2 436 76.6
Phvul.002G132800 Phaseolus vulgaris HOM05D005120 ORTHO05D006174 6.1e-177 624.8 421 77.9
Glyma.09G211200 Glycine max HOM05D005120 ORTHO05D006174 1.4e-176 623.6 421 77.9
Hund11160 Selenicereus undatus HOM05D005120 ORTHO05D006174 7.2e-170 601.3 433 74.1
DCAR_004262 Daucus carota HOM05D005120 ORTHO05D006174 8.8e-168 594.3 442 72.2
Lalb_Chr16g0380871 Lupinus albus HOM05D005120 ORTHO05D006174 1.3e-166 590.5 424 71.9
CSS0018999 Camellia sinensis var. sinensis HOM05D005120 ORTHO05D006174 1.9e-162 576.6 421 76.2
Atru.chr6.1566 Acer truncatum HOM05D005120 ORTHO05D006174 8.0e-161 571.2 457 70.9
unitig_747.g21935 Utricularia gibba HOM05D005120 ORTHO05D006174 2.0e-156 556.6 463 66.3
arahy.Tifrunner.gnm1.ann1.1W9K9Y Arachis hypogaea HOM05D005120 ORTHO05D006174 1.4e-149 533.9 420 67.1
arahy.Tifrunner.gnm1.ann1.5B6WJ4 Arachis hypogaea HOM05D005120 ORTHO05D006174 1.4e-149 533.9 420 67.1
AagrBONN_evm.TU.Sc2ySwM_117.3701 Anthoceros agrestis HOM05D005120 ORTHO05D006174 8.0e-145 518.1 417 64.5
Mapoly0008s0007 Marchantia polymorpha HOM05D005120 ORTHO05D006174 5.0e-139 498.8 423 62.4
Pp3c1_16500 Physcomitrium patens HOM05D005120 ORTHO05D006174 4.3e-138 495.7 416 61.8
Actinidia01339 Actinidia chinensis HOM05D005120 ORTHO05D006174 3.7e-134 482.6 380 72.6
Dinv06901 Davidia involucrata HOM05D005120 ORTHO05D006174 1.2e-132 477.6 376 68.4
SMO347G0341 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 1.9e-125 453.8 367 64.3
Ciclev10003461m.g Citrus clementina HOM05D005120 ORTHO05D006174 9.6e-122 441.4 325 70.8
Atru.chr6.1568 Acer truncatum HOM05D005120 ORTHO05D006174 6.2e-105 385.6 230 90.0
PRCOL_00000663 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 1.9e-98 364.0 414 50.0
Lalb_Chr16g0380881 Lupinus albus HOM05D005120 ORTHO05D006174 2.4e-88 330.5 418 48.1
Atru.chr6.1567 Acer truncatum HOM05D005120 ORTHO05D006174 1.8e-83 314.3 228 71.9
FAN13G2921 Fragaria x ananassa HOM05D005120 ORTHO05D006174 5.1e-83 312.8 375 52.8
Cre09.g394850 Chlamydomonas reinhardtii HOM05D005120 ORTHO05D006174 5.0e-78 296.2 415 42.7
SMO367G1009 Selaginella moellendorffii HOM05D005120 ORTHO05D006174 3.1e-72 276.9 386 39.9
Glyma.08G265967 Glycine max HOM05D005120 ORTHO05D006174 1.1e-69 268.5 236 68.2
Pp3c4_7680 Physcomitrium patens HOM05D005120 ORTHO05D006174 9.7e-66 255.4 437 34.1
CANSAT64G2484 Cannabis sativa HOM05D005120 ORTHO05D006174 1.7e-65 254.6 156 87.2
Zm00001eb025140 Zea mays HOM05D005120 ORTHO05D006174 2.2e-65 254.2 192 68.8
AagrBONN_evm.TU.Sc2ySwM_368.2516 Anthoceros agrestis HOM05D005120 ORTHO05D006174 1.7e-62 244.6 376 38.6
PRCOL_00006607 Prasinoderma coloniale HOM05D005120 ORTHO05D006174 1.6e-52 211.5 452 35.0
CBR_g23155 Chara braunii HOM05D005120 ORTHO05D006174 1.5e-50 204.9 162 66.7
arahy.Tifrunner.gnm1.ann1.B01XES Arachis hypogaea HOM05D005120 ORTHO05D006174 2.2e-46 191.0 236 49.6
SEGI_09610 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 1.4e-40 171.8 126 67.5
PGR044G1750 Punica granatum HOM05D005120 ORTHO05D006174 1.7e-38 164.9 145 64.8
SEGI_28661 Sequoiadendron giganteum HOM05D005120 ORTHO05D006174 7.8e-31 139.4 118 63.6
CBR_g23153 Chara braunii HOM05D005120 ORTHO05D006174 1.0e-27 129.0 109 59.6
CARHR291910 Cardamine hirsuta HOM05D005120 ORTHO05D006174 2.9e-25 120.9 86 69.8
VMungo0647G0996 Vigna mungo HOM05D005120 ORTHO05D006174 7.8e-23 112.8 97 68.0
Oeu023967.3 Olea europaea HOM05D005120 ORTHO05D006174 5.2e-19 100.1 108 52.8
MCO13G610 Micromonas commoda HOM05D005120 ORTHO05D006174 1.1e-16 92.4 406 24.9
CDE03G0049 Ceratophyllum demersum HOM05D005120 ORTHO05D006174 1.9e-13 81.6 67 71.6
PRCOL_00005007 Prasinoderma coloniale HOM05D013059 ORTHO05D014381 3.6e-12 77.4 221 29.0
PRCOL_00001036 Prasinoderma coloniale HOM05D001145 ORTHO05D014381 4.7e-12 77.0 425 24.2


User provided reference genes

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