Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g01902 Nelumbo nucifera HOM05D000077 ORTHO05D271279 3.8e-15 83.6 40 100.0
Nn3g16490 Nelumbo nucifera HOM05D000077 ORTHO05D000552 1.4e-12 75.1 39 89.7
Nitab4.5_0003005g0010 Nicotiana tabacum HOM05D000077 ORTHO05D000552 7.0e-09 62.8 38 71.1
Nitab4.5_0005560g0040 Nicotiana tabacum HOM05D000077 ORTHO05D000552 1.6e-08 61.6 38 68.4
Nn3g16491 Nelumbo nucifera HOM05D000077 ORTHO05D000552 2.0e-08 61.2 36 72.2
PGSC0003DMG400015183 Solanum tuberosum HOM05D000077 ORTHO05D000552 2.0e-08 61.2 38 68.4
PGSC0003DMG400015184 Solanum tuberosum HOM05D000077 ORTHO05D000552 2.0e-08 61.2 38 68.4
Peaxi162Scf00089g00523 Petunia axillaris HOM05D000077 ORTHO05D000552 2.7e-08 60.8 38 65.8
Solyc03g111280.1 Solanum lycopersicum HOM05D000077 ORTHO05D000552 2.7e-08 60.8 37 70.3
Solyc03g111290.2 Solanum lycopersicum HOM05D000077 ORTHO05D000552 2.7e-08 60.8 37 70.3
Solyc03g111300.1 Solanum lycopersicum HOM05D000077 ORTHO05D000552 2.7e-08 60.8 37 70.3
Sopen03g030410 Solanum pennellii HOM05D000077 ORTHO05D000552 2.7e-08 60.8 37 70.3
Sopen03g030420 Solanum pennellii HOM05D000077 ORTHO05D000552 2.7e-08 60.8 37 70.3
Sopen03g030430 Solanum pennellii HOM05D000077 ORTHO05D000552 2.7e-08 60.8 37 70.3
CAN.G352.23 Capsicum annuum HOM05D000077 ORTHO05D000552 3.5e-08 60.5 38 68.4
Nn3g16794 Nelumbo nucifera HOM05D000077 ORTHO05D271708 3.5e-08 60.5 39 79.5
CAN.G352.22 Capsicum annuum HOM05D000077 ORTHO05D000552 5.9e-08 59.7 38 65.8
Atru.chr9.1067 Acer truncatum HOM05D000077 ORTHO05D000552 7.8e-08 59.3 34 79.4
COL.COLO4_28096 Corchorus olitorius HOM05D000077 ORTHO05D000552 7.8e-08 59.3 33 78.8
Peaxi162Scf00089g00515 Petunia axillaris HOM05D000077 ORTHO05D000552 7.8e-08 59.3 38 65.8
PGSC0003DMG400015185 Solanum tuberosum HOM05D000077 ORTHO05D000552 7.8e-08 59.3 38 65.8
Duzib205G1676 Durio zibethinus HOM05D000077 ORTHO05D000552 1.0e-07 58.9 34 73.5
Gohir.A11G036000 Gossypium hirsutum HOM05D000077 ORTHO05D000552 1.0e-07 58.9 34 76.5
Dinv04880 Davidia involucrata HOM05D000077 ORTHO05D000552 1.3e-07 58.5 33 75.8
Dinv04881 Davidia involucrata HOM05D000077 ORTHO05D000552 1.3e-07 58.5 33 75.8
PGSC0003DMG400015242 Solanum tuberosum HOM05D000077 ORTHO05D000552 1.3e-07 58.5 38 63.2
CDE02G3983 Ceratophyllum demersum HOM05D000077 ORTHO05D000552 1.7e-07 58.2 37 62.2
Eucgr.B00113 Eucalyptus grandis HOM05D000077 ORTHO05D000552 1.7e-07 58.2 33 75.8
Eucgr.B00114 Eucalyptus grandis HOM05D000077 ORTHO05D000552 1.7e-07 58.2 33 75.8
Eucgr.B00116 Eucalyptus grandis HOM05D000077 ORTHO05D000552 1.7e-07 58.2 33 75.8
Eucgr.B00117 Eucalyptus grandis HOM05D000077 ORTHO05D000552 1.7e-07 58.2 33 75.8
TWI23G0341 Tripterygium wilfordii HOM05D000077 ORTHO05D000552 1.7e-07 58.2 34 70.6
Eucgr.B00115 Eucalyptus grandis HOM05D000077 ORTHO05D000552 2.3e-07 57.8 33 72.7
Os11g0483000 Oryza sativa ssp. japonica HOM05D000077 ORTHO05D000552 2.3e-07 57.8 32 75.0
Thecc.03G127900 Theobroma cacao HOM05D000077 ORTHO05D000552 2.3e-07 57.8 34 73.5
TAR629G1398 Trochodendron aralioides HOM05D000077 ORTHO05D000552 2.3e-07 57.8 35 68.6
Zm00001eb090620 Zea mays HOM05D000077 ORTHO05D000552 2.3e-07 57.8 32 75.0
Cc04_g10040 Coffea canephora HOM05D000077 ORTHO05D000552 3.0e-07 57.4 34 70.6
Gohir.D11G039600 Gossypium hirsutum HOM05D000077 ORTHO05D000552 3.0e-07 57.4 36 72.2
Dinv11164 Davidia involucrata HOM05D000077 ORTHO05D000552 3.9e-07 57.0 35 71.4
Duzib084G0763 Durio zibethinus HOM05D000077 ORTHO05D000552 3.9e-07 57.0 34 73.5
Os12g0150200 Oryza sativa ssp. japonica HOM05D000077 ORTHO05D002348 3.9e-07 57.0 33 66.7
Gorai.007G042500 Gossypium raimondii HOM05D000077 ORTHO05D000552 5.0e-07 56.6 34 73.5
Zm00001eb169710 Zea mays HOM05D000077 ORTHO05D000552 5.0e-07 56.6 31 74.2
CAN.G352.24 Capsicum annuum HOM05D000077 ORTHO05D000552 6.6e-07 56.2 38 63.2
CDE06G2463 Ceratophyllum demersum HOM05D000077 ORTHO05D000552 6.6e-07 56.2 37 59.5
Cpa.g.sc13.129 Carica papaya HOM05D000077 ORTHO05D000552 1.1e-06 55.5 34 73.5
Eucgr.B00119 Eucalyptus grandis HOM05D000077 ORTHO05D000552 1.1e-06 55.5 33 69.7
Potri.012G096800 Populus trichocarpa HOM05D000077 ORTHO05D000552 1.1e-06 55.5 34 70.6
Rhsim08G0189200 Rhododendron simsii HOM05D000077 ORTHO05D000552 1.1e-06 55.5 33 69.7
Thecc.04G035100 Theobroma cacao HOM05D000077 ORTHO05D000552 1.1e-06 55.5 38 71.1
Zm00001eb406600 Zea mays HOM05D000077 ORTHO05D002348 1.1e-06 55.5 33 63.6
CiPaw.11G008500 Carya illinoinensis HOM05D000077 ORTHO05D000552 1.5e-06 55.1 32 68.8
PSO782G2396 Papaver somniferum HOM05D000077 ORTHO05D000552 1.5e-06 55.1 38 63.2
RcHm_v2.0_Chr7g0190341 Rosa chinensis HOM05D000077 ORTHO05D000552 1.5e-06 55.1 33 69.7
Zm00001eb164090 Zea mays HOM05D000077 ORTHO05D002348 1.5e-06 55.1 33 63.6
Zm00001eb196960 Zea mays HOM05D000077 ORTHO05D002348 1.5e-06 55.1 33 63.6
Zm00001eb406670 Zea mays HOM05D000077 ORTHO05D002348 1.5e-06 55.1 33 63.6
Hma1.2p1_0305F.1_g119570 Hydrangea macrophylla HOM05D000077 ORTHO05D002348 1.9e-06 54.7 34 64.7
Nn3g21589 Nelumbo nucifera HOM05D000077 ORTHO05D049316 1.9e-06 54.7 29 89.7
SalBow1G0761 Salvia bowleyana HOM05D000077 ORTHO05D000552 1.9e-06 54.7 33 66.7
SalBow1G3132 Salvia bowleyana HOM05D000077 ORTHO05D000552 1.9e-06 54.7 33 66.7
Atru.chr1.1299 Acer truncatum HOM05D000077 ORTHO05D000552 2.5e-06 54.3 33 63.6
Migut.D01265 Erythranthe guttata HOM05D000077 ORTHO05D000552 2.5e-06 54.3 33 69.7
MBI07_g34623_MAGBIO Magnolia biondii HOM05D000077 ORTHO05D000552 2.5e-06 54.3 29 79.3
Prupe.5G152200 Prunus persica HOM05D000077 ORTHO05D000552 2.5e-06 54.3 33 72.7
PGR083G0932 Punica granatum HOM05D000077 ORTHO05D000552 2.5e-06 54.3 33 66.7
Cfa018833 Carpinus fangiana HOM05D000077 ORTHO05D000552 3.3e-06 53.9 33 66.7
FAN18G0448 Fragaria x ananassa HOM05D000077 ORTHO05D000552 3.3e-06 53.9 33 66.7
Glyma.03G077600 Glycine max HOM05D000077 ORTHO05D000552 3.3e-06 53.9 31 74.2
Glyma.03G077800 Glycine max HOM05D000077 ORTHO05D000552 3.3e-06 53.9 31 74.2
CiPaw.12G042400 Carya illinoinensis HOM05D000077 ORTHO05D000552 4.3e-06 53.5 33 63.6
Ciclev10019793m.g Citrus clementina HOM05D000077 ORTHO05D000552 4.3e-06 53.5 33 69.7
FAN13G0341 Fragaria x ananassa HOM05D000077 ORTHO05D000552 4.3e-06 53.5 33 66.7
Aqoxy5G03407 Aquilegia oxysepala HOM05D000077 ORTHO05D000552 5.6e-06 53.1 31 71.0
EL10As4g23398 Beta vulgaris HOM05D000077 ORTHO05D000552 5.6e-06 53.1 33 57.6
Carub.0006s0713 Capsella rubella HOM05D000077 ORTHO05D002511 5.6e-06 53.1 33 60.6
Thhalv10013132m.g Eutrema salsugineum HOM05D000077 ORTHO05D002511 5.6e-06 53.1 37 59.5
FAN04G1455 Fragaria x ananassa HOM05D000077 ORTHO05D000552 5.6e-06 53.1 33 66.7
Phvul.011G092100 Phaseolus vulgaris HOM05D000077 ORTHO05D002348 5.6e-06 53.1 33 60.6
Sp5g13460 Schrenkiella parvula HOM05D000077 ORTHO05D000552 5.6e-06 53.1 28 82.1
HPP92_007820 Vanilla planifolia HOM05D000077 ORTHO05D002348 5.6e-06 53.1 33 60.6
CARHR204920 Cardamine hirsuta HOM05D000077 ORTHO05D002511 7.3e-06 52.8 33 60.6
Dinv20748 Davidia involucrata HOM05D000077 ORTHO05D000552 7.3e-06 52.8 32 62.5
Manes.17G103500 Manihot esculenta HOM05D000077 ORTHO05D000552 7.3e-06 52.8 38 65.8
Os11g0151400 Oryza sativa ssp. japonica HOM05D000077 ORTHO05D002348 7.3e-06 52.8 29 69.0
PSO425G0045 Papaver somniferum HOM05D000077 ORTHO05D002348 7.3e-06 52.8 31 67.7
TWI53G1184 Tripterygium wilfordii HOM05D000077 ORTHO05D000552 7.3e-06 52.8 32 62.5
AT5G08250 Arabidopsis thaliana HOM05D000077 ORTHO05D002511 9.5e-06 52.4 37 56.8
Haze_07211 Corylus avellana HOM05D000077 ORTHO05D000552 9.5e-06 52.4 33 63.6
Haze_07226 Corylus avellana HOM05D000077 ORTHO05D000552 9.5e-06 52.4 33 63.6
Nn2g14747 Nelumbo nucifera HOM05D000077 ORTHO05D000552 9.5e-06 52.4 32 65.6
Os01g0858350 Oryza sativa ssp. japonica HOM05D000077 ORTHO05D002348 9.5e-06 52.4 30 63.3
PSO384G2517 Papaver somniferum HOM05D000077 ORTHO05D002348 9.5e-06 52.4 32 62.5
PSO425G0008 Papaver somniferum HOM05D000077 ORTHO05D002348 9.5e-06 52.4 33 60.6
SEGI_01019 Sequoiadendron giganteum HOM05D000077 ORTHO05D000552 9.5e-06 52.4 38 55.3


User provided reference genes

Program Settings