Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g01873 Nelumbo nucifera HOM05D007590 ORTHO05D007875 9.2e-53 209.9 103 100.0
Nn3g19015 Nelumbo nucifera HOM05D007590 ORTHO05D007875 9.9e-31 136.7 105 71.4
TAR374G1746 Trochodendron aralioides HOM05D007590 ORTHO05D007875 1.9e-29 132.5 104 70.2
TAR375G1006 Trochodendron aralioides HOM05D007590 ORTHO05D007875 8.6e-27 123.6 102 64.7
TAR636G1032 Trochodendron aralioides HOM05D007590 ORTHO05D007875 5.6e-26 120.9 102 66.7
TAR629G1835 Trochodendron aralioides HOM05D007590 ORTHO05D007875 1.2e-25 119.8 102 63.7
TAR629G2201 Trochodendron aralioides HOM05D007590 ORTHO05D007875 4.7e-25 117.9 105 63.8
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 2.0e-23 112.5 104 59.6
Rhsim02G0243500 Rhododendron simsii HOM05D007590 ORTHO05D007875 3.4e-23 111.7 107 57.0
Hma1.2p1_1746F.1_g300410 Hydrangea macrophylla HOM05D007590 ORTHO05D007875 9.9e-23 110.2 110 60.0
CSS0045762 Camellia sinensis var. sinensis HOM05D007590 ORTHO05D007875 6.4e-22 107.5 108 59.3
QL02p030422 Quercus lobata HOM05D007590 ORTHO05D007875 1.4e-21 106.3 111 52.3
Prupe.5G120200 Prunus persica HOM05D007590 ORTHO05D007875 2.4e-21 105.5 109 55.0
CiPaw.11G121300 Carya illinoinensis HOM05D007590 ORTHO05D007875 7.1e-21 104.0 103 59.2
LjContig00312_ERROPOS870357g0000452 Lotus japonicus HOM05D007590 ORTHO05D007875 9.2e-21 103.6 113 53.1
CiPaw.12G082900 Carya illinoinensis HOM05D007590 ORTHO05D007875 6.0e-20 100.9 108 57.4
Phvul.002G164500 Phaseolus vulgaris HOM05D007590 ORTHO05D007875 6.0e-20 100.9 100 51.0
Cfa012011 Carpinus fangiana HOM05D007590 ORTHO05D007875 1.0e-19 100.1 118 50.0
Potri.001G091500 Populus trichocarpa HOM05D007590 ORTHO05D007875 6.6e-19 97.4 106 52.8
Glyma.01G225600 Glycine max HOM05D007590 ORTHO05D007875 1.1e-18 96.7 105 54.3
Sabra01G0067900 Salix brachista HOM05D007590 ORTHO05D007875 1.9e-18 95.9 101 52.5
PGSC0003DMG400012280 Solanum tuberosum HOM05D007590 ORTHO05D007875 2.5e-18 95.5 100 53.0
Aqoxy5G04230 Aquilegia oxysepala HOM05D007590 ORTHO05D007875 4.3e-18 94.7 107 53.3
Solyc08g082370.1 Solanum lycopersicum HOM05D007590 ORTHO05D007875 5.6e-18 94.4 100 53.0
Sopen08g030630 Solanum pennellii HOM05D007590 ORTHO05D007875 5.6e-18 94.4 100 53.0
CDE10G0175 Ceratophyllum demersum HOM05D007590 ORTHO05D007875 2.1e-17 92.4 101 47.5
FAN08G0943 Fragaria x ananassa HOM05D007590 ORTHO05D007875 2.8e-17 92.0 117 55.6
MSTRG.25673 Avicennia marina HOM05D007590 ORTHO05D007875 3.6e-17 91.7 107 53.3
Lalb_Chr05g0211541 Lupinus albus HOM05D007590 ORTHO05D007875 8.1e-17 90.5 109 54.1
RcHm_v2.0_Chr7g0194781 Rosa chinensis HOM05D007590 ORTHO05D007875 1.1e-16 90.1 112 50.9
Ca_24513_v3 Cicer arietinum L. HOM05D007590 ORTHO05D007875 1.4e-16 89.7 101 46.5
Ca_29733_v3 Cicer arietinum L. HOM05D007590 ORTHO05D007875 1.4e-16 89.7 101 46.5
Manes.02G010000 Manihot esculenta HOM05D007590 ORTHO05D007875 1.8e-16 89.4 110 51.8
Potri.003G140100 Populus trichocarpa HOM05D007590 ORTHO05D007875 1.8e-16 89.4 106 50.0
Manes.02G009900 Manihot esculenta HOM05D007590 ORTHO05D007875 2.4e-16 89.0 113 49.6
Sabra03G0101100 Salix brachista HOM05D007590 ORTHO05D007875 2.4e-16 89.0 106 51.9
Lsat_1_v5_gn_6_83961 Lactuca sativa HOM05D007590 ORTHO05D007875 3.1e-16 88.6 107 53.3
FAN04G0970 Fragaria x ananassa HOM05D007590 ORTHO05D007875 4.0e-16 88.2 113 52.2
HanXRQChr03g0083501 Helianthus annuus HOM05D007590 ORTHO05D007875 4.0e-16 88.2 105 52.4
MSTRG.11924 Avicennia marina HOM05D007590 ORTHO05D007875 5.3e-16 87.8 102 51.0
Cc08_g16080 Coffea canephora HOM05D007590 ORTHO05D007875 5.3e-16 87.8 112 48.2
FAN13G0413 Fragaria x ananassa HOM05D007590 ORTHO05D007875 5.3e-16 87.8 112 55.4
Peaxi162Scf00102g00178 Petunia axillaris HOM05D007590 ORTHO05D007875 5.3e-16 87.8 101 53.5
Medtr5g009260 Medicago truncatula HOM05D007590 ORTHO05D007875 6.9e-16 87.4 101 49.5
TPR.G25602 Trifolium pratense HOM05D007590 ORTHO05D007875 1.5e-15 86.3 101 45.5
CDE10G0927 Ceratophyllum demersum HOM05D007590 ORTHO05D007875 2.0e-15 85.9 101 46.5
Duzib084G0874 Durio zibethinus HOM05D007590 ORTHO05D007875 3.4e-15 85.1 101 47.5
AUR62010841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 4.4e-15 84.7 110 48.2
Peaxi162Scf00074g00097 Petunia axillaris HOM05D007590 ORTHO05D007875 5.8e-15 84.3 87 57.5
Duzib205G1174 Durio zibethinus HOM05D007590 ORTHO05D007875 7.6e-15 84.0 105 47.6
AUR62019841 Chenopodium quinoa HOM05D007590 ORTHO05D007875 1.7e-14 82.8 110 48.2
Thecc.03G298200 Theobroma cacao HOM05D007590 ORTHO05D007875 2.2e-14 82.4 109 45.9
Actinidia22161 Actinidia chinensis HOM05D007590 ORTHO05D007875 2.9e-14 82.0 99 51.5
Glyma.11G017400 Glycine max HOM05D007590 ORTHO05D007875 3.8e-14 81.6 108 47.2
Nitab4.5_0002782g0040 Nicotiana tabacum HOM05D007590 ORTHO05D007875 4.9e-14 81.3 96 54.2
EL10Ac5g12916 Beta vulgaris HOM05D007590 ORTHO05D007875 1.4e-13 79.7 70 61.4
CiPaw.12G082700 Carya illinoinensis HOM05D007590 ORTHO05D007875 1.4e-13 79.7 105 47.6
MBI06_g08455_MAGBIO Magnolia biondii HOM05D007590 ORTHO05D007875 1.9e-13 79.3 103 45.6
DCAR_006487 Daucus carota HOM05D007590 ORTHO05D007875 3.2e-13 78.6 111 47.7
Gorai.008G254500 Gossypium raimondii HOM05D007590 ORTHO05D007875 9.3e-13 77.0 106 47.2
Nitab4.5_0001231g0140 Nicotiana tabacum HOM05D007590 ORTHO05D007875 9.3e-13 77.0 96 51.0
Gohir.D12G237700 Gossypium hirsutum HOM05D007590 ORTHO05D007875 1.2e-12 76.6 106 46.2
Gohir.D12G237966 Gossypium hirsutum HOM05D007590 ORTHO05D007875 1.2e-12 76.6 106 46.2
Duzib068G0682 Durio zibethinus HOM05D007590 ORTHO05D007875 2.1e-12 75.9 108 43.5
Sed0003477 Sechium edule HOM05D007590 ORTHO05D007875 2.7e-12 75.5 61 60.7
Sed0026863 Sechium edule HOM05D007590 ORTHO05D007875 2.7e-12 75.5 114 43.0
Cpa.g.sc79.34 Carica papaya HOM05D007590 ORTHO05D007875 3.5e-12 75.1 112 42.0
Ah.12g052560 Amaranthus hybridus HOM05D007590 ORTHO05D007875 4.6e-12 74.7 119 44.5
Ciclev10022592m.g Citrus clementina HOM05D007590 ORTHO05D007875 4.6e-12 74.7 103 44.7
MELO3C016294.2 Cucumis melo HOM05D007590 ORTHO05D007875 4.6e-12 74.7 107 43.9
Lsat_1_v5_gn_3_10720 Lactuca sativa HOM05D007590 ORTHO05D007875 7.8e-12 73.9 106 45.3
Oeu063521.1 Olea europaea HOM05D007590 ORTHO05D007875 7.8e-12 73.9 107 45.8
Manes.01G049200 Manihot esculenta HOM05D007590 ORTHO05D007875 1.3e-11 73.2 96 47.9
CsaV3_4G006590 Cucumis sativus L. HOM05D007590 ORTHO05D007875 1.7e-11 72.8 106 44.3
SalBow1G4032 Salvia bowleyana HOM05D007590 ORTHO05D007875 2.3e-11 72.4 96 42.7
SalBow1G6340 Salvia bowleyana HOM05D007590 ORTHO05D007875 2.3e-11 72.4 96 42.7
Sopen08g004200 Solanum pennellii HOM05D007590 ORTHO05D007875 2.3e-11 72.4 111 47.7
Gohir.A12G236500 Gossypium hirsutum HOM05D007590 ORTHO05D007875 3.0e-11 72.0 107 47.7
Thhalv10023875m.g Eutrema salsugineum HOM05D010600 ORTHO05D007875 3.9e-11 71.6 118 38.1
PGSC0003DMG400005790 Solanum tuberosum HOM05D007590 ORTHO05D007875 3.9e-11 71.6 110 47.3
CANSAT21G0370 Cannabis sativa HOM05D007590 ORTHO05D007875 5.1e-11 71.2 122 41.0
Duzib068G0902 Durio zibethinus HOM05D007590 ORTHO05D007875 5.1e-11 71.2 100 47.0
ClCG07G011620 Citrullus lanatus HOM05D007590 ORTHO05D007875 1.5e-10 69.7 65 55.4
COL.COLO4_10703 Corchorus olitorius HOM05D007590 ORTHO05D007875 3.3e-10 68.6 70 54.3
ATR0602G105 Amborella trichopoda HOM05D007590 ORTHO05D007875 5.6e-10 67.8 126 38.1
TWI60G0225 Tripterygium wilfordii HOM05D007590 ORTHO05D007875 7.3e-10 67.4 113 46.9
THA.LOC104817601 Tarenaya hassleriana HOM05D010600 ORTHO05D007875 1.6e-09 66.2 109 41.3
Aa31LG2G1420 Aethionema arabicum HOM05D010600 ORTHO05D007875 6.2e-09 64.3 119 39.5
SGA_v2.0_scaffold305G47972 Striga asiatica HOM05D007590 ORTHO05D007875 6.2e-09 64.3 101 42.6
Eucgr.D01739 Eucalyptus grandis HOM05D007590 ORTHO05D007875 8.1e-09 63.9 136 39.0
Sp2g00320 Schrenkiella parvula HOM05D010600 ORTHO05D007875 1.4e-08 63.2 115 36.5
BcaB07g31463 Brassica carinata HOM05D010600 ORTHO05D007875 2.4e-08 62.4 116 37.9
C09p17810 Brassica napus HOM05D010600 ORTHO05D007875 2.4e-08 62.4 117 35.9
BolC9t54679H Brassica oleracea HOM05D010600 ORTHO05D007875 2.4e-08 62.4 117 35.9
Gohir.D03G083700 Gossypium hirsutum HOM05D007590 ORTHO05D007875 2.4e-08 62.4 98 44.9
Gorai.003G079000 Gossypium raimondii HOM05D007590 ORTHO05D007875 3.1e-08 62.0 98 43.9
Gohir.A02G100200 Gossypium hirsutum HOM05D007590 ORTHO05D007875 4.0e-08 61.6 97 41.2
AT1G64405 Arabidopsis thaliana HOM05D010600 ORTHO05D007875 6.9e-08 60.8 120 35.8
BcaC04g22568 Brassica carinata HOM05D010600 ORTHO05D007875 6.9e-08 60.8 117 35.9
Migut.A00642 Erythranthe guttata HOM05D007590 ORTHO05D007875 6.9e-08 60.8 101 39.6
Gohir.A02G100100 Gossypium hirsutum HOM05D007590 ORTHO05D007875 6.9e-08 60.8 98 46.9
A09p14360 Brassica napus HOM05D010600 ORTHO05D007875 2.0e-07 59.3 119 37.8
BraA09t37083Z Brassica rapa HOM05D010600 ORTHO05D007875 2.0e-07 59.3 119 37.8
PGR031G2453 Punica granatum HOM05D007590 ORTHO05D007875 2.0e-07 59.3 122 39.3
AL2G10440 Arabidopsis lyrata HOM05D010600 ORTHO05D007875 2.6e-07 58.9 116 37.1
BolC9t54630H Brassica oleracea HOM05D010600 ORTHO05D007875 3.4e-07 58.5 113 37.2
Sc07g0010040 Simmondsia chinensis HOM05D007590 ORTHO05D007875 5.8e-07 57.8 115 38.3
BcaC04g22619 Brassica carinata HOM05D010600 ORTHO05D007875 9.9e-07 57.0 112 33.9
CARHR046510 Cardamine hirsuta HOM05D010600 ORTHO05D007875 1.3e-06 56.6 117 35.9
FvH4_5g04610 Fragaria vesca HOM05D007590 ORTHO05D007875 1.7e-06 56.2 51 62.7
FAN18G1504 Fragaria x ananassa HOM05D005474 ORTHO05D006551 1.7e-06 56.2 51 62.7
FAN18G3330 Fragaria x ananassa HOM05D005474 ORTHO05D006551 1.7e-06 56.2 51 62.7
HPP92_008631 Vanilla planifolia HOM05D026338 ORTHO05D007875 2.2e-06 55.8 103 37.9
C09p17280 Brassica napus HOM05D010600 ORTHO05D007875 6.4e-06 54.3 113 36.3


User provided reference genes

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