Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g01808 Nelumbo nucifera HOM05D004628 ORTHO05D005166 2.0e-83 312.4 158 100.0
Nn5g30859 Nelumbo nucifera HOM05D004628 ORTHO05D005166 4.5e-59 231.5 149 79.2
Nn6g32057 Nelumbo nucifera HOM05D004628 ORTHO05D005166 1.5e-57 226.5 149 79.9
TAR628G0237 Trochodendron aralioides HOM05D004628 ORTHO05D005166 1.7e-26 123.2 147 51.0
TAR381G0961 Trochodendron aralioides HOM05D004628 ORTHO05D005166 8.6e-26 120.9 140 52.9
CSS0024832 Camellia sinensis var. sinensis HOM05D004628 ORTHO05D005166 5.6e-17 91.7 86 59.3
MBI16_g18399_MAGBIO Magnolia biondii HOM05D004628 ORTHO05D005166 5.6e-17 91.7 122 50.8
Actinidia28002 Actinidia chinensis HOM05D004628 ORTHO05D006160 9.5e-17 90.9 79 62.0
Dinv09529 Davidia involucrata HOM05D004628 ORTHO05D005166 2.1e-16 89.7 84 58.3
GSVIVG01037037001 Vitis vinifera HOM05D004628 ORTHO05D005166 2.8e-16 89.4 97 57.7
vmacro22260 Vaccinium macrocarpon HOM05D004628 ORTHO05D005166 8.9e-15 84.3 106 50.9
QL11p028919 Quercus lobata HOM05D004628 ORTHO05D005166 2.6e-14 82.8 141 39.7
QL93p0138_0014 Quercus lobata HOM05D004628 ORTHO05D005166 2.6e-14 82.8 141 39.7
Dinv16065 Davidia involucrata HOM05D004628 ORTHO05D005166 4.4e-14 82.0 173 35.8
Rhsim05G0093300 Rhododendron simsii HOM05D004628 ORTHO05D005166 9.8e-14 80.9 87 49.4
Ah.01g024550 Amaranthus hybridus HOM05D004628 ORTHO05D005166 4.9e-13 78.6 122 44.3
Hma1.2p1_1051F.1_g252220 Hydrangea macrophylla HOM05D004628 ORTHO05D005166 1.1e-12 77.4 88 52.3
AUR62030875 Chenopodium quinoa HOM05D004628 ORTHO05D005166 1.4e-12 77.0 87 52.9
AUR62027031 Chenopodium quinoa HOM05D004628 ORTHO05D005166 2.4e-12 76.3 87 50.6
Ah.01g007160 Amaranthus hybridus HOM05D004628 ORTHO05D005166 4.1e-12 75.5 66 63.6
Manes.10G088200 Manihot esculenta HOM05D004628 ORTHO05D005166 7.1e-12 74.7 69 59.4
Thecc.02G121000 Theobroma cacao HOM05D004628 ORTHO05D005166 1.2e-11 73.9 84 54.8
CiPaw.06G163200 Carya illinoinensis HOM05D004628 ORTHO05D005166 1.6e-11 73.6 87 48.3
Hund00415 Selenicereus undatus HOM05D004628 ORTHO05D005166 1.6e-11 73.6 90 52.2
Sc08g0004290 Simmondsia chinensis HOM05D004628 ORTHO05D005166 1.6e-11 73.6 67 59.7
Oeu037295.1 Olea europaea HOM05D004628 ORTHO05D005166 6.0e-11 71.6 160 35.6
Gorai.013G052200 Gossypium raimondii HOM05D004628 ORTHO05D005166 1.0e-10 70.9 156 39.7
Lj5A222T77 Lonicera japonica HOM05D004628 ORTHO05D005166 1.0e-10 70.9 88 51.1
EL10Ac4g09112 Beta vulgaris HOM05D004628 ORTHO05D005166 1.7e-10 70.1 88 52.3
Duzib132G0942 Durio zibethinus HOM05D004628 ORTHO05D005166 1.7e-10 70.1 84 50.0
Gohir.D13G046500 Gossypium hirsutum HOM05D004628 ORTHO05D005166 1.7e-10 70.1 156 39.7
PGR142G3374 Punica granatum HOM05D004628 ORTHO05D005166 2.3e-10 69.7 88 48.9
Gohir.A03G180400 Gossypium hirsutum HOM05D004628 ORTHO05D005166 3.0e-10 69.3 102 42.2
Gohir.A13G048100 Gossypium hirsutum HOM05D004628 ORTHO05D005166 3.0e-10 69.3 128 40.6
Potri.009G084400 Populus trichocarpa HOM05D004628 ORTHO05D005166 3.9e-10 68.9 69 55.1
Gorai.005G229300 Gossypium raimondii HOM05D004628 ORTHO05D005166 5.1e-10 68.6 102 42.2
DCAR_021936 Daucus carota HOM05D004628 ORTHO05D005166 6.6e-10 68.2 87 46.0
Gohir.D02G203066 Gossypium hirsutum HOM05D004628 ORTHO05D005166 6.6e-10 68.2 102 42.2
Prupe.8G151700 Prunus persica HOM05D004628 ORTHO05D005166 1.1e-09 67.4 73 56.2
Atru.chr5.2254 Acer truncatum HOM05D004628 ORTHO05D005166 1.9e-09 66.6 90 47.8
SGA_v2.0_scaffold32G12978 Striga asiatica HOM05D004628 ORTHO05D005166 2.5e-09 66.2 128 39.1
VMungo1215G2063 Vigna mungo HOM05D004628 ORTHO05D005166 2.5e-09 66.2 102 46.1
Sabra09G0065100 Salix brachista HOM05D004628 ORTHO05D005166 4.3e-09 65.5 69 53.6
MSTRG.16666 Avicennia marina HOM05D004628 ORTHO05D005166 5.6e-09 65.1 139 38.8
COL.COLO4_32472 Corchorus olitorius HOM05D004628 ORTHO05D005166 5.6e-09 65.1 84 47.6
Sabra16G0180900 Salix brachista HOM05D004628 ORTHO05D005166 5.6e-09 65.1 69 55.1
Cc02_g20190 Coffea canephora HOM05D004628 ORTHO05D005166 7.3e-09 64.7 80 50.0
Manes.07G052400 Manihot esculenta HOM05D004628 ORTHO05D005166 7.3e-09 64.7 66 54.5
Cpa.g.sc106.25 Carica papaya HOM05D004628 ORTHO05D005166 9.5e-09 64.3 63 58.7
Cfa004712 Carpinus fangiana HOM05D004628 ORTHO05D005166 9.5e-09 64.3 81 48.1
Glyma.07G260600 Glycine max HOM05D004628 ORTHO05D005166 9.5e-09 64.3 82 51.2
Phvul.003G078900 Phaseolus vulgaris HOM05D004628 ORTHO05D005166 9.5e-09 64.3 103 45.6
Aqoxy6G01519 Aquilegia oxysepala HOM05D004628 ORTHO05D005166 2.1e-08 63.2 141 39.0
MELO3C018028.2 Cucumis melo HOM05D004628 ORTHO05D005166 2.1e-08 63.2 87 50.6
Sed0020853 Sechium edule HOM05D004628 ORTHO05D005166 3.6e-08 62.4 123 35.8
Migut.B00478 Erythranthe guttata HOM05D004628 ORTHO05D005166 4.7e-08 62.0 90 45.6
Solyc01g106750.2 Solanum lycopersicum HOM05D004628 ORTHO05D005166 4.7e-08 62.0 168 34.5
CsaV3_4G000030 Cucumis sativus L. HOM05D004628 ORTHO05D005166 6.2e-08 61.6 87 49.4
Eucgr.B01419 Eucalyptus grandis HOM05D004628 ORTHO05D005166 1.1e-07 60.8 87 44.8
Ciclev10027822m.g Citrus clementina HOM05D004628 ORTHO05D005166 1.4e-07 60.5 89 47.2
RcHm_v2.0_Chr6g0247921 Rosa chinensis HOM05D004628 ORTHO05D005166 1.8e-07 60.1 59 57.6
Glyma.17G013400 Glycine max HOM05D004628 ORTHO05D005166 2.3e-07 59.7 82 48.8
Sopen01g049070 Solanum pennellii HOM05D004628 ORTHO05D005166 2.3e-07 59.7 168 33.3
ClCG10G009980 Citrullus lanatus HOM05D004628 ORTHO05D005166 4.0e-07 58.9 65 53.8
Nitab4.5_0010657g0040 Nicotiana tabacum HOM05D004628 ORTHO05D005166 4.0e-07 58.9 76 48.7
SalBow6G1764 Salvia bowleyana HOM05D004628 ORTHO05D005166 4.0e-07 58.9 82 46.3
SalBow6G5308 Salvia bowleyana HOM05D004628 ORTHO05D005166 4.0e-07 58.9 82 46.3
PGSC0003DMG400001291 Solanum tuberosum HOM05D004628 ORTHO05D005166 4.0e-07 58.9 75 45.3
Ca_21082_v3 Cicer arietinum L. HOM05D004628 ORTHO05D005166 6.8e-07 58.2 150 32.7
Nitab4.5_0000772g0030 Nicotiana tabacum HOM05D004628 ORTHO05D005166 6.8e-07 58.2 76 47.4
Haze_10333 Corylus avellana HOM05D004628 ORTHO05D005166 8.9e-07 57.8 81 46.9
Peaxi162Scf00016g03244 Petunia axillaris HOM05D004628 ORTHO05D005166 8.9e-07 57.8 81 48.1
unitig_60.g25465 Utricularia gibba HOM05D004628 ORTHO05D005166 1.2e-06 57.4 137 33.6
FAN20G2820 Fragaria x ananassa HOM05D004628 ORTHO05D005166 2.6e-06 56.2 150 34.0
Lj4g0013789 Lotus japonicus HOM05D004628 ORTHO05D005166 2.6e-06 56.2 84 45.2
CAN.G535.2 Capsicum annuum HOM05D004628 ORTHO05D005166 3.4e-06 55.8 86 40.7
FAN27G1701 Fragaria x ananassa HOM05D004628 ORTHO05D005166 3.4e-06 55.8 150 33.3
Lsat_1_v5_gn_5_111860 Lactuca sativa HOM05D004628 ORTHO05D005166 3.4e-06 55.8 140 37.9
Prupe.8G151500 Prunus persica HOM05D004628 ORTHO05D005166 3.4e-06 55.8 61 55.7
ECA234G3304 Erigeron canadensis HOM05D004628 ORTHO05D005166 9.9e-06 54.3 160 33.1
Medtr4g132160 Medicago truncatula HOM05D004628 ORTHO05D005166 9.9e-06 54.3 59 54.2
TWI14G1143 Tripterygium wilfordii HOM05D004628 ORTHO05D005166 9.9e-06 54.3 68 45.6


User provided reference genes

Program Settings