Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g01738 Nelumbo nucifera HOM05D000154 ORTHO05D011923 1.8e-51 205.7 105 100.0
Aqoxy7G00178 Aquilegia oxysepala HOM05D000154 ORTHO05D000092 6.3e-09 64.3 170 31.8
TAR629G2214 Trochodendron aralioides HOM05D000154 ORTHO05D000092 1.1e-08 63.5 78 47.4
Aa31LG5G11230 Aethionema arabicum HOM05D000154 ORTHO05D000092 2.4e-08 62.4 42 69.0
ATR0706G116 Amborella trichopoda HOM05D000154 ORTHO05D000092 2.4e-08 62.4 42 69.0
Lalb_Chr06g0173851 Lupinus albus HOM05D000154 ORTHO05D000092 2.4e-08 62.4 42 69.0
MBI19_g24001_MAGBIO Magnolia biondii HOM05D000154 ORTHO05D000092 2.4e-08 62.4 42 71.4
Ca_16588_v3 Cicer arietinum L. HOM05D000154 ORTHO05D000092 3.1e-08 62.0 49 63.3
FAN02G3964 Fragaria x ananassa HOM05D000154 ORTHO05D000092 3.1e-08 62.0 42 69.0
Lalb_Chr02g0156901 Lupinus albus HOM05D000154 ORTHO05D000092 3.1e-08 62.0 42 69.0
arahy.Tifrunner.gnm1.ann1.L98YJM Arachis hypogaea HOM05D000154 ORTHO05D000092 4.1e-08 61.6 42 69.0
arahy.Tifrunner.gnm1.ann1.SEW56W Arachis hypogaea HOM05D000154 ORTHO05D000092 4.1e-08 61.6 42 69.0
CAN.G607.13 Capsicum annuum HOM05D000154 ORTHO05D000092 4.1e-08 61.6 42 69.0
Cfa007156 Carpinus fangiana HOM05D000154 ORTHO05D000092 4.1e-08 61.6 42 69.0
Haze_14961 Corylus avellana HOM05D000154 ORTHO05D000092 4.1e-08 61.6 42 69.0
Glyma.16G046200 Glycine max HOM05D000154 ORTHO05D000092 4.1e-08 61.6 42 69.0
Glyma.19G105900 Glycine max HOM05D000154 ORTHO05D000092 4.1e-08 61.6 42 69.0
Nitab4.5_0000348g0030 Nicotiana tabacum HOM05D000154 ORTHO05D000092 4.1e-08 61.6 42 69.0
Nitab4.5_0003681g0030 Nicotiana tabacum HOM05D000154 ORTHO05D000092 4.1e-08 61.6 42 69.0
Nitab4.5_0005148g0020 Nicotiana tabacum HOM05D000154 ORTHO05D000092 4.1e-08 61.6 42 69.0
Nitab4.5_0006083g0020 Nicotiana tabacum HOM05D000154 ORTHO05D000092 4.1e-08 61.6 42 69.0
Peaxi162Scf00057g00207 Petunia axillaris HOM05D000154 ORTHO05D000092 4.1e-08 61.6 42 69.0
Phvul.001G099600 Phaseolus vulgaris HOM05D000154 ORTHO05D000092 4.1e-08 61.6 42 69.0
PGR042G2355 Punica granatum HOM05D000154 ORTHO05D000092 4.1e-08 61.6 42 69.0
SEGI_00573 Sequoiadendron giganteum HOM05D000154 ORTHO05D000092 4.1e-08 61.6 42 69.0
Sopen12g032410 Solanum pennellii HOM05D000154 ORTHO05D000092 4.1e-08 61.6 42 71.4
PGSC0003DMG400029362 Solanum tuberosum HOM05D000154 ORTHO05D000092 4.1e-08 61.6 42 71.4
TAR622G0974 Trochodendron aralioides HOM05D000154 ORTHO05D000092 4.1e-08 61.6 42 69.0
HPP92_001323 Vanilla planifolia HOM05D000154 ORTHO05D000092 4.1e-08 61.6 48 64.6
VMungo1383G3388 Vigna mungo HOM05D000154 ORTHO05D000092 4.1e-08 61.6 42 69.0
Duzib187G1159 Durio zibethinus HOM05D000154 ORTHO05D000092 5.4e-08 61.2 42 69.0
MD09G1001500 Malus domestica HOM05D000154 ORTHO05D000092 7.0e-08 60.8 42 69.0
MD17G1005100 Malus domestica HOM05D000154 ORTHO05D000092 7.0e-08 60.8 42 69.0
Medtr6g033165 Medicago truncatula HOM05D000154 ORTHO05D000092 7.0e-08 60.8 42 69.0
PSO135G0326 Papaver somniferum HOM05D000154 ORTHO05D000092 7.0e-08 60.8 42 69.0
PSO384G0077 Papaver somniferum HOM05D000154 ORTHO05D000092 7.0e-08 60.8 42 69.0
Psat0s2870g0040 Pisum sativum HOM05D000154 ORTHO05D000092 7.0e-08 60.8 42 69.0
Thecc.04G050400 Theobroma cacao HOM05D000154 ORTHO05D000092 7.0e-08 60.8 42 69.0
HPP92_002137 Vanilla planifolia HOM05D000154 ORTHO05D000092 7.0e-08 60.8 48 64.6
GSVIVG01032959001 Vitis vinifera HOM05D000154 ORTHO05D000092 7.0e-08 60.8 42 69.0
Atru.chr6.2717 Acer truncatum HOM05D000154 ORTHO05D000092 9.2e-08 60.5 42 64.3
Aqoxy5G03021 Aquilegia oxysepala HOM05D000154 ORTHO05D000092 9.2e-08 60.5 42 66.7
CAN.G1011.4 Capsicum annuum HOM05D000154 ORTHO05D000092 9.2e-08 60.5 42 66.7
Cc03_g16170 Coffea canephora HOM05D000154 ORTHO05D000092 9.2e-08 60.5 42 66.7
Duzib264G0477 Durio zibethinus HOM05D000154 ORTHO05D000092 9.2e-08 60.5 42 69.0
Eucgr.G01920 Eucalyptus grandis HOM05D000154 ORTHO05D000092 9.2e-08 60.5 42 66.7
Nn3g16239 Nelumbo nucifera HOM05D000154 ORTHO05D000092 9.2e-08 60.5 42 66.7
QL02p068710 Quercus lobata HOM05D000154 ORTHO05D000092 9.2e-08 60.5 42 66.7
THA.LOC104822431 Tarenaya hassleriana HOM05D000154 ORTHO05D000092 9.2e-08 60.5 42 69.0
TWI32G1234 Tripterygium wilfordii HOM05D000154 ORTHO05D000092 9.2e-08 60.5 42 66.7
Cpa.g.sc70.45 Carica papaya HOM05D000154 ORTHO05D000092 1.2e-07 60.1 42 66.7
DCAR_014456 Daucus carota HOM05D000154 ORTHO05D000092 1.2e-07 60.1 42 66.7
Lj8A168G100 Lonicera japonica HOM05D000154 ORTHO05D000092 1.2e-07 60.1 42 66.7
Prupe.5G110400 Prunus persica HOM05D000154 ORTHO05D000092 1.2e-07 60.1 44 61.4
Sabra14G0109100 Salix brachista HOM05D000154 ORTHO05D000092 1.2e-07 60.1 42 66.7
Hund04129 Selenicereus undatus HOM05D000154 ORTHO05D000092 1.2e-07 60.1 42 66.7
Sc07g0003910 Simmondsia chinensis HOM05D000154 ORTHO05D000092 1.2e-07 60.1 42 66.7
Solyc12g096580.2 Solanum lycopersicum HOM05D000154 ORTHO05D000092 1.2e-07 60.1 41 70.7
Actinidia36247 Actinidia chinensis HOM05D000154 ORTHO05D000092 1.6e-07 59.7 42 66.7
COL.COLO4_13396 Corchorus olitorius HOM05D000154 ORTHO05D000092 1.6e-07 59.7 42 66.7
Nitab4.5_0000668g0100 Nicotiana tabacum HOM05D000154 ORTHO05D000092 1.6e-07 59.7 42 69.0
Nitab4.5_0001110g0050 Nicotiana tabacum HOM05D000154 ORTHO05D000092 1.6e-07 59.7 42 69.0
Oeu064440.1 Olea europaea HOM05D000154 ORTHO05D000092 1.6e-07 59.7 42 66.7
PSO017G3434 Papaver somniferum HOM05D000154 ORTHO05D000092 1.6e-07 59.7 42 66.7
PSO478G3827 Papaver somniferum HOM05D000154 ORTHO05D000092 1.6e-07 59.7 42 66.7
Prupe.3G314700 Prunus persica HOM05D000154 ORTHO05D000092 1.6e-07 59.7 42 66.7
SMO367G1209 Selaginella moellendorffii HOM05D000154 ORTHO05D000092 1.6e-07 59.7 42 66.7
Solyc08g015680.1 Solanum lycopersicum HOM05D000154 ORTHO05D000092 1.6e-07 59.7 42 64.3
Solyc12g017910.2 Solanum lycopersicum HOM05D000154 ORTHO05D000092 1.6e-07 59.7 42 64.3
Sopen08g005790 Solanum pennellii HOM05D000154 ORTHO05D000092 1.6e-07 59.7 42 64.3
Sopen12g008730 Solanum pennellii HOM05D000154 ORTHO05D000092 1.6e-07 59.7 42 64.3
PGSC0003DMG400020386 Solanum tuberosum HOM05D000154 ORTHO05D000092 1.6e-07 59.7 42 64.3
PGSC0003DMG400025230 Solanum tuberosum HOM05D000154 ORTHO05D000092 1.6e-07 59.7 42 64.3
CANSAT64G1394 Cannabis sativa HOM05D000154 ORTHO05D000092 2.0e-07 59.3 42 64.3
ClCG05G012520 Citrullus lanatus HOM05D000154 ORTHO05D000092 2.0e-07 59.3 42 64.3
MELO3C014763.2 Cucumis melo HOM05D000154 ORTHO05D000092 2.0e-07 59.3 42 64.3
CsaV3_3G019990 Cucumis sativus L. HOM05D000154 ORTHO05D000092 2.0e-07 59.3 42 64.3
Duzib147G0802 Durio zibethinus HOM05D000154 ORTHO05D000092 2.0e-07 59.3 42 66.7
Lj2g0022685 Lotus japonicus HOM05D000154 ORTHO05D000092 2.0e-07 59.3 42 64.3
MD06G1095800 Malus domestica HOM05D000154 ORTHO05D000092 2.0e-07 59.3 44 61.4
Sed0019184 Sechium edule HOM05D000154 ORTHO05D000092 2.0e-07 59.3 42 64.3
Sed0023364 Sechium edule HOM05D000154 ORTHO05D000092 2.0e-07 59.3 42 64.3
TAR374G1049 Trochodendron aralioides HOM05D000154 ORTHO05D011923 2.0e-07 59.3 49 61.2
Ah.03g136570 Amaranthus hybridus HOM05D000154 ORTHO05D000092 2.7e-07 58.9 42 64.3
BcaNung05594 Brassica carinata HOM05D000154 ORTHO05D000092 2.7e-07 58.9 42 61.9
CSS0010647 Camellia sinensis var. sinensis HOM05D000154 ORTHO05D000092 2.7e-07 58.9 42 64.3
CSS0035992 Camellia sinensis var. sinensis HOM05D000154 ORTHO05D000092 2.7e-07 58.9 42 64.3
CiPaw.11G127400 Carya illinoinensis HOM05D000154 ORTHO05D000092 2.7e-07 58.9 43 60.5
Ciclev10014338m.g Citrus clementina HOM05D000154 ORTHO05D000092 2.7e-07 58.9 42 61.9
Pp3c2_21430 Physcomitrium patens HOM05D000154 ORTHO05D000092 2.7e-07 58.9 42 59.5
Potri.002G237500 Populus trichocarpa HOM05D000154 ORTHO05D000092 2.7e-07 58.9 42 64.3
Potri.014G144900 Populus trichocarpa HOM05D000154 ORTHO05D000092 2.7e-07 58.9 42 64.3
Dinv33265 Davidia involucrata HOM05D000154 ORTHO05D000092 3.5e-07 58.5 42 64.3
HanXRQChr08g0235951 Helianthus annuus HOM05D000154 ORTHO05D000092 3.5e-07 58.5 42 64.3
Lsat_1_v5_gn_6_69800 Lactuca sativa HOM05D000154 ORTHO05D000092 3.5e-07 58.5 42 64.3
Lj7C618G7 Lonicera japonica HOM05D000154 ORTHO05D000092 3.5e-07 58.5 42 64.3
MBI07_g07560_MAGBIO Magnolia biondii HOM05D000154 ORTHO05D000092 3.5e-07 58.5 42 66.7
Rhsim08G0038100 Rhododendron simsii HOM05D000154 ORTHO05D000092 3.5e-07 58.5 42 64.3
TPR.G30890 Trifolium pratense HOM05D000154 ORTHO05D000092 3.5e-07 58.5 42 66.7
Zm00001eb141980 Zea mays HOM05D000154 ORTHO05D000092 3.5e-07 58.5 77 44.2
Zm00001eb341570 Zea mays HOM05D000154 ORTHO05D000092 3.5e-07 58.5 42 66.7
AL3G10040 Arabidopsis lyrata HOM05D000154 ORTHO05D000092 4.5e-07 58.2 42 64.3
AT3G02050 Arabidopsis thaliana HOM05D000154 ORTHO05D000092 4.5e-07 58.2 42 64.3
MSTRG.9263 Avicennia marina HOM05D000154 ORTHO05D000092 4.5e-07 58.2 42 66.7
Carub.0003s0004 Capsella rubella HOM05D000154 ORTHO05D000092 4.5e-07 58.2 42 64.3
CARHR074880 Cardamine hirsuta HOM05D000154 ORTHO05D000092 4.5e-07 58.2 42 64.3
CiPaw.04G000500 Carya illinoinensis HOM05D000154 ORTHO05D000092 4.5e-07 58.2 42 66.7
Migut.G00911 Erythranthe guttata HOM05D000154 ORTHO05D000092 4.5e-07 58.2 42 66.7
Gohir.D04G073200 Gossypium hirsutum HOM05D000154 ORTHO05D000092 4.5e-07 58.2 42 64.3
Gorai.012G082500 Gossypium raimondii HOM05D000154 ORTHO05D000092 4.5e-07 58.2 42 64.3
Sp3g00040 Schrenkiella parvula HOM05D000154 ORTHO05D000092 4.5e-07 58.2 42 64.3
ATR0582G289 Amborella trichopoda HOM05D000154 ORTHO05D000092 5.9e-07 57.8 42 61.9
CDE02G2398 Ceratophyllum demersum HOM05D000154 ORTHO05D000092 5.9e-07 57.8 42 61.9
AUR62017474 Chenopodium quinoa HOM05D000154 ORTHO05D000092 5.9e-07 57.8 42 64.3
AUR62042858 Chenopodium quinoa HOM05D000154 ORTHO05D000092 5.9e-07 57.8 42 64.3
FvH4_6g54410 Fragaria vesca HOM05D000154 ORTHO05D000092 5.9e-07 57.8 42 61.9
FAN05G0643 Fragaria x ananassa HOM05D000154 ORTHO05D000092 5.9e-07 57.8 42 64.3
FAN09G0449 Fragaria x ananassa HOM05D000154 ORTHO05D000092 5.9e-07 57.8 42 61.9
FAN09G2568 Fragaria x ananassa HOM05D000154 ORTHO05D000092 5.9e-07 57.8 42 61.9
Oeu022915.2 Olea europaea HOM05D000154 ORTHO05D011923 5.9e-07 57.8 39 69.2
Thhalv10020105m.g Eutrema salsugineum HOM05D000154 ORTHO05D000092 7.7e-07 57.4 42 64.3
Oeu050304.1 Olea europaea HOM05D000154 ORTHO05D000092 7.7e-07 57.4 38 71.1
SalBow3G0393 Salvia bowleyana HOM05D000154 ORTHO05D000092 7.7e-07 57.4 42 66.7
Solyc12g017900.3 Solanum lycopersicum HOM05D000154 ORTHO05D011923 7.7e-07 57.4 42 61.9
TAR626G1350 Trochodendron aralioides HOM05D000154 ORTHO05D000092 7.7e-07 57.4 82 40.2
EL10Ac6g13896 Beta vulgaris HOM05D000154 ORTHO05D000092 1.0e-06 57.0 42 61.9
Cpa.g.sc122.13 Carica papaya HOM05D000154 ORTHO05D000092 1.0e-06 57.0 44 59.1
Manes.04G094700 Manihot esculenta HOM05D000154 ORTHO05D000092 1.0e-06 57.0 42 61.9
Manes.11G074100 Manihot esculenta HOM05D000154 ORTHO05D000092 1.0e-06 57.0 42 61.9
vmacro18398 Vaccinium macrocarpon HOM05D000154 ORTHO05D000092 1.0e-06 57.0 42 61.9
CAN.G566.45 Capsicum annuum HOM05D000154 ORTHO05D000092 1.3e-06 56.6 42 66.7
Dinv00163 Davidia involucrata HOM05D009932 ORTHO05D010207 1.3e-06 56.6 42 61.9
PSO478G4022 Papaver somniferum HOM05D000154 ORTHO05D000092 1.3e-06 56.6 42 59.5
Peaxi162Scf01205g00184 Petunia axillaris HOM05D000154 ORTHO05D000092 1.3e-06 56.6 38 68.4
RcHm_v2.0_Chr2g0176661 Rosa chinensis HOM05D000154 ORTHO05D000092 1.3e-06 56.6 42 64.3
Sopen12g008720 Solanum pennellii HOM05D000154 ORTHO05D011923 1.3e-06 56.6 42 61.9
TWI15G0431 Tripterygium wilfordii HOM05D000154 ORTHO05D000092 1.7e-06 56.2 41 63.4
Os07g0669650 Oryza sativa ssp. japonica HOM05D000154 ORTHO05D000092 2.3e-06 55.8 48 58.3
Sc01g0009960 Simmondsia chinensis HOM05D000154 ORTHO05D000092 2.3e-06 55.8 41 61.0
Zm00001eb363430 Zea mays HOM05D000154 ORTHO05D000092 2.3e-06 55.8 42 59.5
SGA_v2.0_scaffold12G06228 Striga asiatica HOM05D000154 ORTHO05D000092 2.9e-06 55.5 42 61.9
Haze_08728 Corylus avellana HOM05D000154 ORTHO05D000092 3.8e-06 55.1 39 64.1
Duzib205G1862 Durio zibethinus HOM05D000154 ORTHO05D000092 3.8e-06 55.1 88 35.2
Migut.N03017 Erythranthe guttata HOM05D000154 ORTHO05D000092 3.8e-06 55.1 42 61.9
Hma1.2p1_0410F.1_g146980 Hydrangea macrophylla HOM05D000154 ORTHO05D000092 3.8e-06 55.1 42 54.8
Peaxi162Scf00459g00122 Petunia axillaris HOM05D000154 ORTHO05D000092 3.8e-06 55.1 42 59.5
Sp6g06230 Schrenkiella parvula HOM05D000154 ORTHO05D000092 3.8e-06 55.1 61 44.3
GSVIVG01013617001 Vitis vinifera HOM05D000154 ORTHO05D000092 3.8e-06 55.1 42 54.8
Ciclev10014387m.g Citrus clementina HOM05D000154 ORTHO05D000092 5.0e-06 54.7 42 54.8
Gohir.A11G062300 Gossypium hirsutum HOM05D000154 ORTHO05D000092 5.0e-06 54.7 42 61.9
Lalb_Chr02g0156921 Lupinus albus HOM05D000154 ORTHO05D000092 5.0e-06 54.7 42 61.9
Nn7g37913 Nelumbo nucifera HOM05D000154 ORTHO05D000092 5.0e-06 54.7 42 57.1
Phvul.002G294304 Phaseolus vulgaris HOM05D000154 ORTHO05D000092 5.0e-06 54.7 83 37.3
Sabra02G0181000 Salix brachista HOM05D000154 ORTHO05D000092 5.0e-06 54.7 42 59.5
SMO115G0006 Selaginella moellendorffii HOM05D000154 ORTHO05D000092 5.0e-06 54.7 42 57.1
Atru.chr9.2088 Acer truncatum HOM05D000154 ORTHO05D000092 6.6e-06 54.3 41 61.0
FAN04G0805 Fragaria x ananassa HOM05D000154 ORTHO05D000092 6.6e-06 54.3 50 52.0
CANSAT21G2276 Cannabis sativa HOM05D000154 ORTHO05D000092 8.6e-06 53.9 40 62.5
Duzib192G0953 Durio zibethinus HOM05D000154 ORTHO05D000092 8.6e-06 53.9 42 57.1
MBI02_g00519_MAGBIO Magnolia biondii HOM05D000154 ORTHO05D000092 8.6e-06 53.9 41 53.7
MD05G1223100 Malus domestica HOM05D000154 ORTHO05D000092 8.6e-06 53.9 41 56.1
MD11G1069200 Malus domestica HOM05D000154 ORTHO05D000092 8.6e-06 53.9 73 42.5
Phvul.002G294700 Phaseolus vulgaris HOM05D000154 ORTHO05D000092 8.6e-06 53.9 83 36.1
Pp3c18_8540 Physcomitrium patens HOM05D000154 ORTHO05D000092 8.6e-06 53.9 42 57.1
RcHm_v2.0_Chr5g0025981 Rosa chinensis HOM05D000154 ORTHO05D000092 8.6e-06 53.9 41 56.1
Hund11425 Selenicereus undatus HOM05D000154 ORTHO05D004066 8.6e-06 53.9 60 43.3


User provided reference genes

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