Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g01721 Nelumbo nucifera HOM05D003721 ORTHO05D004303 0.0e+00 1468.8 803 100.0
TAR629G3186 Trochodendron aralioides HOM05D003721 ORTHO05D004303 1.5e-299 1032.7 812 71.8
Dinv32529 Davidia involucrata HOM05D003721 ORTHO05D004303 1.0e-252 877.1 812 64.9
Atru.chr5.592 Acer truncatum HOM05D003721 ORTHO05D004303 2.2e-242 842.8 816 61.5
COL.COLO4_06374 Corchorus olitorius HOM05D003721 ORTHO05D004303 1.1e-238 830.5 808 62.4
MBI07_g11740_MAGBIO Magnolia biondii HOM05D003721 ORTHO05D004303 1.5e-235 820.1 818 61.4
Cfa003861 Carpinus fangiana HOM05D003721 ORTHO05D004303 2.6e-235 819.3 812 61.1
Thecc.01G351200 Theobroma cacao HOM05D003721 ORTHO05D004303 1.3e-234 817.0 806 62.0
PSO170G3080 Papaver somniferum HOM05D003721 ORTHO05D004303 1.7e-234 816.6 821 61.0
CSS0038344 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 6.3e-234 814.7 804 61.7
CSS0014201 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 3.1e-233 812.4 805 61.9
Duzib133G0509 Durio zibethinus HOM05D003721 ORTHO05D004303 9.2e-233 810.8 806 61.2
Potri.014G091300 Populus trichocarpa HOM05D003721 ORTHO05D004303 2.0e-232 809.7 806 60.4
TWI59G1183 Tripterygium wilfordii HOM05D003721 ORTHO05D004303 1.0e-231 807.4 809 61.4
Dinv43871 Davidia involucrata HOM05D003721 ORTHO05D004303 6.6e-231 804.7 810 60.2
Potri.002G165500 Populus trichocarpa HOM05D003721 ORTHO05D004303 5.7e-227 791.6 808 59.7
Manes.07G084500 Manihot esculenta HOM05D003721 ORTHO05D004303 1.1e-225 787.3 801 60.5
PSO063G0643 Papaver somniferum HOM05D003721 ORTHO05D004303 1.4e-225 786.9 821 59.7
Sabra14G0066200 Salix brachista HOM05D003721 ORTHO05D004303 4.4e-219 765.4 850 57.5
QL04p055909 Quercus lobata HOM05D003721 ORTHO05D004303 1.7e-218 763.5 815 58.0
GSVIVG01027009001 Vitis vinifera HOM05D003721 ORTHO05D004303 8.3e-218 761.1 721 63.4
CiPaw.01G068800 Carya illinoinensis HOM05D003721 ORTHO05D004303 3.3e-214 749.2 815 58.4
Ciclev10018933m.g Citrus clementina HOM05D003721 ORTHO05D004303 5.6e-214 748.4 812 57.6
Glyma.07G062500 Glycine max HOM05D003721 ORTHO05D004303 5.6e-214 748.4 819 55.4
Rhsim07G0009400 Rhododendron simsii HOM05D003721 ORTHO05D004303 7.5e-211 738.0 952 50.8
CSS0042065 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 2.2e-210 736.5 826 56.9
vmacro13221 Vaccinium macrocarpon HOM05D003721 ORTHO05D004303 2.4e-209 733.0 847 55.6
VMungo0331G1476 Vigna mungo HOM05D003721 ORTHO05D004303 7.1e-209 731.5 844 54.5
Actinidia20169 Actinidia chinensis HOM05D003721 ORTHO05D004303 4.7e-205 718.8 813 55.7
CANSAT94G0013 Cannabis sativa HOM05D003721 ORTHO05D004303 1.4e-204 717.2 814 57.0
Gohir.D12G110000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 2.3e-204 716.5 803 56.5
Gohir.A11G093000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 2.0e-203 713.4 786 56.6
Aqoxy5G04062 Aquilegia oxysepala HOM05D003721 ORTHO05D004303 9.9e-203 711.1 829 55.6
Glyma.16G030600 Glycine max HOM05D003721 ORTHO05D004303 6.4e-202 708.4 819 53.5
Lalb_Chr17g0338961 Lupinus albus HOM05D003721 ORTHO05D004303 6.4e-202 708.4 818 54.4
Lj7A506T70 Lonicera japonica HOM05D003721 ORTHO05D004303 3.5e-200 702.6 811 56.6
arahy.Tifrunner.gnm1.ann1.X01UQ7 Arachis hypogaea HOM05D003721 ORTHO05D004303 7.8e-200 701.4 813 55.5
Duzib138G0478 Durio zibethinus HOM05D003721 ORTHO05D004303 3.9e-199 699.1 844 53.3
Cc02_g38690 Coffea canephora HOM05D003721 ORTHO05D004303 8.1e-197 691.4 803 53.5
FAN03G0785 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.4e-196 690.6 814 55.3
Sopen01g039000 Solanum pennellii HOM05D003721 ORTHO05D004303 1.8e-196 690.3 813 54.4
Glyma.18G239200 Glycine max HOM05D003721 ORTHO05D004303 3.1e-196 689.5 813 54.9
RcHm_v2.0_Chr1g0357861 Rosa chinensis HOM05D003721 ORTHO05D004303 3.1e-196 689.5 813 55.4
Solyc01g095210.3 Solanum lycopersicum HOM05D003721 ORTHO05D004303 8.9e-196 688.0 814 54.3
MD07G1130300 Malus domestica HOM05D003721 ORTHO05D004303 1.5e-195 687.2 808 54.8
arahy.Tifrunner.gnm1.ann1.J8U9TP Arachis hypogaea HOM05D003721 ORTHO05D004303 4.4e-195 685.6 813 54.7
Ca_07946_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 2.9e-194 682.9 819 53.5
Glyma.09G253700 Glycine max HOM05D003721 ORTHO05D004303 3.8e-194 682.6 815 54.6
FAN10G1929 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.0e-191 674.5 814 54.7
AUR62004419 Chenopodium quinoa HOM05D003721 ORTHO05D004303 5.1e-191 672.2 793 54.0
Prupe.2G178900 Prunus persica HOM05D003721 ORTHO05D004303 8.7e-191 671.4 816 54.4
Peaxi162Scf00020g01717 Petunia axillaris HOM05D003721 ORTHO05D004303 1.5e-190 670.6 826 53.4
PGR031G3178 Punica granatum HOM05D003721 ORTHO05D004303 4.3e-190 669.1 806 55.0
Medtr7g079200 Medicago truncatula HOM05D003721 ORTHO05D004303 5.6e-190 668.7 808 53.3
FAN10G1794 Fragaria x ananassa HOM05D003721 ORTHO05D004303 1.6e-189 667.2 814 53.9
TPR.G29569 Trifolium pratense HOM05D003721 ORTHO05D004303 1.6e-189 667.2 811 53.1
FvH4_7g15532 Fragaria vesca HOM05D003721 ORTHO05D004303 6.2e-189 665.2 814 54.1
Gohir.A12G106100 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.1e-188 664.5 804 53.6
Sed0001790 Sechium edule HOM05D003721 ORTHO05D004303 1.4e-188 664.1 815 53.9
FAN06G3247 Fragaria x ananassa HOM05D003721 ORTHO05D004303 6.9e-188 661.8 814 53.8
Hund16678 Selenicereus undatus HOM05D003721 ORTHO05D004303 2.0e-187 660.2 793 55.4
DCAR_008641 Daucus carota HOM05D003721 ORTHO05D004303 3.4e-187 659.4 819 53.1
Phvul.010G105500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 4.5e-187 659.1 759 53.8
Lj1g0019249 Lotus japonicus HOM05D003721 ORTHO05D004303 7.6e-187 658.3 824 52.8
AUR62022625 Chenopodium quinoa HOM05D003721 ORTHO05D004303 9.3e-185 651.4 793 53.0
Sc23g0002500 Simmondsia chinensis HOM05D003721 ORTHO05D004303 1.0e-183 647.9 825 52.6
arahy.Tifrunner.gnm1.ann1.QXLJ4L Arachis hypogaea HOM05D003721 ORTHO05D004303 2.5e-182 643.3 813 51.7
Gorai.007G104100 Gossypium raimondii HOM05D003721 ORTHO05D004303 3.3e-182 642.9 807 52.0
CAN.G78.136 Capsicum annuum HOM05D003721 ORTHO05D004303 5.6e-182 642.1 811 51.9
FAN06G4946 Fragaria x ananassa HOM05D003721 ORTHO05D004303 5.6e-182 642.1 838 51.8
EL10Ac1g00346 Beta vulgaris HOM05D003721 ORTHO05D004303 2.8e-181 639.8 790 52.4
Eucgr.D02329 Eucalyptus grandis HOM05D003721 ORTHO05D004303 2.6e-179 633.3 799 51.8
ECA240G1536 Erigeron canadensis HOM05D003721 ORTHO05D004303 4.9e-178 629.0 806 51.6
Gorai.008G119300 Gossypium raimondii HOM05D003721 ORTHO05D004303 1.1e-177 627.9 804 52.1
CsaV3_6G000920 Cucumis sativus L. HOM05D003721 ORTHO05D004303 7.1e-177 625.2 820 52.8
ATR1093G009 Amborella trichopoda HOM05D003721 ORTHO05D004303 1.3e-175 620.9 821 50.2
Haze_15575 Corylus avellana HOM05D003721 ORTHO05D004303 1.1e-174 617.8 614 60.6
arahy.Tifrunner.gnm1.ann1.M56506 Arachis hypogaea HOM05D003721 ORTHO05D004303 5.6e-174 615.5 813 50.3
Haze_15580 Corylus avellana HOM05D003721 ORTHO05D004303 9.6e-174 614.8 614 60.3
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 1.3e-173 614.4 817 50.9
Sed0002636 Sechium edule HOM05D003721 ORTHO05D004303 1.2e-171 607.8 815 50.8
Nitab4.5_0000915g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 1.0e-170 604.7 812 50.7
Nitab4.5_0003501g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 9.3e-169 598.2 814 50.1
Ca_03491_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 5.1e-167 592.4 823 49.0
ClCG06G003380 Citrullus lanatus HOM05D003721 ORTHO05D004303 3.3e-166 589.7 876 48.1
HPP92_023080 Vanilla planifolia HOM05D003721 ORTHO05D004303 8.2e-165 585.1 806 49.8
Ah.05g180090 Amaranthus hybridus HOM05D003721 ORTHO05D004303 3.1e-164 583.2 813 49.1
CDE02G2110 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 9.3e-161 571.6 808 47.6
TPR.G18168 Trifolium pratense HOM05D003721 ORTHO05D004303 1.0e-159 568.2 836 47.4
MD01G1072600 Malus domestica HOM05D003721 ORTHO05D004303 2.3e-159 567.0 808 49.0
HanXRQChr06g0166991 Helianthus annuus HOM05D003721 ORTHO05D004303 6.7e-159 565.5 716 52.0
Cpa.g.sc11.59 Carica papaya HOM05D003721 ORTHO05D004303 3.3e-158 563.1 535 63.0
Gohir.D11G097866 Gossypium hirsutum HOM05D003721 ORTHO05D004303 6.3e-157 558.9 626 56.5
Migut.B01806 Erythranthe guttata HOM05D003721 ORTHO05D004303 8.2e-157 558.5 813 47.5
Medtr8g028445 Medicago truncatula HOM05D003721 ORTHO05D004303 1.2e-155 554.7 822 47.2
AL4G45430 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 7.7e-155 552.0 813 47.7
Thhalv10005812m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 5.0e-154 549.3 760 48.0
Psat3g105680 Pisum sativum HOM05D003721 ORTHO05D004303 1.9e-153 547.4 645 54.1
AT2G46180 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 7.2e-153 545.4 813 47.5
SalBow3G1665 Salvia bowleyana HOM05D003721 ORTHO05D004303 1.4e-151 541.2 808 48.1
CDE08G1001 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 9.7e-150 535.0 808 46.2
Sp5g01840 Schrenkiella parvula HOM05D003721 ORTHO05D004303 1.3e-149 534.6 718 49.3
Phvul.008G057500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 1.4e-148 531.2 837 47.0
MELO3C021177.2 Cucumis melo HOM05D003721 ORTHO05D004303 4.5e-147 526.2 721 51.2
C08p36410 Brassica napus HOM05D003721 ORTHO05D004303 1.9e-145 520.8 810 46.3
A09p53630 Brassica napus HOM05D003721 ORTHO05D004303 2.5e-145 520.4 809 46.2
BolC8t51224H Brassica oleracea HOM05D003721 ORTHO05D004303 3.2e-145 520.0 810 46.3
BcaC07g40669 Brassica carinata HOM05D003721 ORTHO05D004303 4.2e-145 519.6 810 46.0
Lsat_1_v5_gn_3_138600 Lactuca sativa HOM05D003721 ORTHO05D004303 2.7e-144 516.9 813 46.6
BraA09t40785Z Brassica rapa HOM05D003721 ORTHO05D004303 1.4e-143 514.6 809 46.1
Sp5g32820 Schrenkiella parvula HOM05D003721 ORTHO05D004303 2.3e-143 513.8 811 46.4
Thhalv10001332m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 3.3e-142 510.0 809 45.2
A07p25580 Brassica napus HOM05D003721 ORTHO05D004303 1.3e-141 508.1 710 48.5
C06p27570 Brassica napus HOM05D003721 ORTHO05D004303 4.8e-141 506.1 720 47.8
MSTRG.20868 Avicennia marina HOM05D003721 ORTHO05D004303 6.3e-141 505.8 809 45.1
VMungo1383G3272 Vigna mungo HOM05D003721 ORTHO05D004303 5.3e-140 502.7 766 47.3
Zm00001eb042060 Zea mays HOM05D003721 ORTHO05D004303 2.0e-139 500.7 765 45.5
Oeu010635.1 Olea europaea HOM05D003721 ORTHO05D004303 7.7e-139 498.8 871 42.8
BcaC07g40653 Brassica carinata HOM05D003721 ORTHO05D004303 1.7e-138 497.7 818 45.4
AT3G61570 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 2.2e-138 497.3 715 47.3
BolC6t37925H Brassica oleracea HOM05D003721 ORTHO05D004303 5.5e-137 492.7 718 46.9
BraA07t30199Z Brassica rapa HOM05D003721 ORTHO05D004303 1.2e-136 491.5 727 46.8
Lalb_Chr04g0259321 Lupinus albus HOM05D003721 ORTHO05D004303 4.7e-136 489.6 513 58.9
AL5G43940 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 5.2e-135 486.1 717 46.6
BcaC07g42682 Brassica carinata HOM05D003721 ORTHO05D004303 5.3e-132 476.1 684 48.1
BcaC08g45136 Brassica carinata HOM05D003721 ORTHO05D004303 9.1e-132 475.3 707 46.3
THA.LOC104817323 Tarenaya hassleriana HOM05D003721 ORTHO05D004303 3.8e-130 469.9 807 43.9
unitig_52.g17061 Utricularia gibba HOM05D003721 ORTHO05D004303 5.0e-130 469.5 726 45.6
Aa31LG1G27570 Aethionema arabicum HOM05D003721 ORTHO05D004303 2.2e-125 454.1 810 42.5
Sabra02G0146000 Salix brachista HOM05D003721 ORTHO05D004303 1.4e-124 451.4 612 48.7
BcaB02g07370 Brassica carinata HOM05D003721 ORTHO05D004303 2.7e-123 447.2 717 44.6
Mapoly0053s0042 Marchantia polymorpha HOM05D003721 ORTHO05D004303 2.1e-120 437.6 738 41.2
Carub.0004s2886 Capsella rubella HOM05D003721 ORTHO05D004303 4.7e-120 436.4 812 42.0
Os08g0386900 Oryza sativa ssp. japonica HOM05D003721 ORTHO05D004303 5.2e-111 406.4 383 62.7
CARHR141460 Cardamine hirsuta HOM05D003721 ORTHO05D004303 1.2e-107 395.2 503 51.3
PGSC0003DMG400000197 Solanum tuberosum HOM05D003721 ORTHO05D004303 8.6e-106 389.0 387 61.2
SEGI_16602 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 1.8e-103 381.3 359 61.0
BcaC07g42673 Brassica carinata HOM05D003721 ORTHO05D004303 2.3e-95 354.4 724 39.2
Hma1.2p1_0623F.1_g191170 Hydrangea macrophylla HOM05D003721 ORTHO05D004303 4.7e-88 330.1 377 54.1
TPR.G35781 Trifolium pratense HOM05D003721 ORTHO05D004303 7.8e-75 286.2 393 48.9
Pp3c12_14500 Physcomitrium patens HOM05D003721 ORTHO05D004303 1.1e-68 265.8 379 47.2
Actinidia37722 Actinidia chinensis HOM05D003721 ORTHO05D004074 1.7e-61 241.9 389 46.3
Pp3c3_18730 Physcomitrium patens HOM05D003721 ORTHO05D004303 1.7e-61 241.9 776 31.7
BcaC07g40657 Brassica carinata HOM05D003721 ORTHO05D004303 2.2e-61 241.5 251 59.4
QL01p002178 Quercus lobata HOM05D003721 ORTHO05D004303 2.9e-61 241.1 340 50.6
Actinidia10078 Actinidia chinensis HOM05D003721 ORTHO05D004303 2.4e-60 238.0 418 43.3
Haze_15579 Corylus avellana HOM05D003721 ORTHO05D004303 1.3e-50 205.7 201 62.2
AagrBONN_evm.TU.Sc2ySwM_369.3 Anthoceros agrestis HOM05D003721 ORTHO05D004303 4.8e-48 197.2 325 40.0
Haze_15574 Corylus avellana HOM05D003721 ORTHO05D004303 1.1e-39 169.5 181 58.0
arahy.Tifrunner.gnm1.ann1.LL4IHI Arachis hypogaea HOM05D003721 ORTHO05D004303 4.1e-39 167.5 145 62.1
SEGI_39264 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 1.6e-35 155.6 383 33.4
BcaC08g45231 Brassica carinata HOM05D003721 ORTHO05D004303 8.8e-34 149.8 138 60.9
SGA_v2.0_scaffold4G02274 Striga asiatica HOM05D003721 ORTHO05D004303 3.8e-29 134.4 181 51.9
Cpa.g.sc11.56 Carica papaya HOM05D003721 ORTHO05D004303 2.7e-27 128.3 104 69.2
Actinidia37723 Actinidia chinensis HOM05D003721 ORTHO05D004303 2.4e-23 115.2 200 40.5
Lalb_Chr04g0259331 Lupinus albus HOM05D003721 ORTHO05D004303 7.0e-23 113.6 286 34.3
SHI13345 Sapria himalayana HOM05D003721 ORTHO05D004303 1.2e-22 112.8 118 53.4
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.5e-17 95.9 106 50.9
MCO16G164 Micromonas commoda HOM05D003721 ORTHO05D004303 2.6e-17 95.1 307 30.9
Actinidia10077 Actinidia chinensis HOM05D003721 ORTHO05D004303 2.2e-16 92.0 160 45.6
BcaC08g45137 Brassica carinata HOM05D003721 ORTHO05D004303 1.1e-15 89.7 336 31.8
CBR_g40304 Chara braunii HOM05D001539 ORTHO05D000937 1.1e-15 89.7 177 39.0
Actinidia21288 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.8e-15 89.0 62 74.2
Actinidia10079 Actinidia chinensis HOM05D003721 ORTHO05D004303 2.0e-14 85.5 84 57.1
Migut.B01807 Erythranthe guttata HOM05D005133 ORTHO05D006685 2.2e-13 82.0 74 58.1
Cre12.g495800 Chlamydomonas reinhardtii HOM05D003721 ORTHO05D004303 6.5e-13 80.5 203 32.0
Carub.0005s2826 Capsella rubella HOM05D003721 ORTHO05D004303 1.6e-11 75.9 264 30.7
CBR_g40298 Chara braunii HOM05D003721 ORTHO05D004303 5.2e-10 70.9 383 24.0
BcaC07g40658 Brassica carinata HOM05D003721 ORTHO05D004303 1.4e-07 62.8 348 29.9
Zm00001eb251850 Zea mays HOM05D003721 ORTHO05D004303 4.1e-07 61.2 44 72.7
Rhsim05G0209700 Rhododendron simsii HOM05D003721 ORTHO05D004303 1.2e-06 59.7 74 45.9
arahy.Tifrunner.gnm1.ann1.TR1UXP Arachis hypogaea HOM05D003721 ORTHO05D004303 2.0e-06 58.9 68 51.5
Rhsim11G0030600 Rhododendron simsii HOM05D003721 ORTHO05D004303 2.7e-06 58.5 74 45.9
arahy.Tifrunner.gnm1.ann1.B4ZXCR Arachis hypogaea HOM05D003721 ORTHO05D004303 5.9e-06 57.4 79 45.6
arahy.Tifrunner.gnm1.ann1.W0C6E5 Arachis hypogaea HOM05D000200 ORTHO05D000262 7.7e-06 57.0 107 40.2


User provided reference genes

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