Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g01673 Nelumbo nucifera HOM05D005438 ORTHO05D006744 5.7e-220 767.3 392 100.0
TAR374G1319 Trochodendron aralioides HOM05D005438 ORTHO05D006744 8.1e-142 507.7 397 68.3
GSVIVG01019417001 Vitis vinifera HOM05D005438 ORTHO05D006744 2.3e-136 489.6 395 65.3
CiPaw.11G129800 Carya illinoinensis HOM05D005438 ORTHO05D006744 1.3e-131 473.8 395 63.8
Dinv37597 Davidia involucrata HOM05D005438 ORTHO05D006744 4.2e-130 468.8 398 64.6
Thecc.03G286500 Theobroma cacao HOM05D005438 ORTHO05D006744 1.8e-125 453.4 393 63.4
Actinidia10609 Actinidia chinensis HOM05D005438 ORTHO05D006744 4.0e-125 452.2 400 61.2
Gohir.D03G078500 Gossypium hirsutum HOM05D005438 ORTHO05D006744 3.4e-124 449.1 394 62.4
Duzib084G0802 Durio zibethinus HOM05D005438 ORTHO05D006744 4.5e-124 448.7 394 60.2
Aqoxy7G00195 Aquilegia oxysepala HOM05D005438 ORTHO05D006744 1.7e-123 446.8 404 61.1
Atru.chr9.2115 Acer truncatum HOM05D005438 ORTHO05D006744 2.9e-123 446.0 400 60.5
Gohir.A02G105300 Gossypium hirsutum HOM05D005438 ORTHO05D006744 8.4e-123 444.5 394 61.9
Gorai.003G085600 Gossypium raimondii HOM05D005438 ORTHO05D006744 1.9e-122 443.4 395 62.3
TWI60G1446 Tripterygium wilfordii HOM05D005438 ORTHO05D006744 7.1e-122 441.4 403 60.8
COL.COLO4_08362 Corchorus olitorius HOM05D005438 ORTHO05D006744 5.1e-120 435.3 394 59.9
MD14G1111900 Malus domestica HOM05D005438 ORTHO05D006744 8.7e-120 434.5 397 59.7
Rhsim02G0235700 Rhododendron simsii HOM05D005438 ORTHO05D006744 8.7e-120 434.5 396 58.8
Prupe.5G106500 Prunus persica HOM05D005438 ORTHO05D006744 2.5e-119 433.0 395 59.2
arahy.Tifrunner.gnm1.ann1.Y7QUAU Arachis hypogaea HOM05D005438 ORTHO05D006744 7.4e-119 431.4 391 60.4
CsaV3_5G002390 Cucumis sativus L. HOM05D005438 ORTHO05D006744 7.4e-119 431.4 395 59.5
arahy.Tifrunner.gnm1.ann1.I29YTG Arachis hypogaea HOM05D005438 ORTHO05D006744 3.7e-118 429.1 393 60.3
QL12p031793 Quercus lobata HOM05D005438 ORTHO05D006744 8.1e-118 427.9 433 55.0
VMungo0251G0328 Vigna mungo HOM05D005438 ORTHO05D006744 3.1e-117 426.0 399 58.9
Eucgr.L02379 Eucalyptus grandis HOM05D005438 ORTHO05D006744 4.0e-117 425.6 395 60.8
Eucgr.D01812 Eucalyptus grandis HOM05D005438 ORTHO05D006744 9.0e-117 424.5 395 60.8
CSS0046697 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 1.5e-116 423.7 403 58.3
Glyma.08G018100 Glycine max HOM05D005438 ORTHO05D006744 1.5e-116 423.7 399 60.2
MELO3C005715.2 Cucumis melo HOM05D005438 ORTHO05D006744 4.5e-116 422.2 395 58.2
Duzib205G0010 Durio zibethinus HOM05D005438 ORTHO05D006744 7.6e-116 421.4 391 58.6
Phvul.002G293100 Phaseolus vulgaris HOM05D005438 ORTHO05D006744 4.9e-115 418.7 399 57.1
RcHm_v2.0_Chr7g0196591 Rosa chinensis HOM05D005438 ORTHO05D006744 6.5e-115 418.3 393 59.0
MBI11_g09068_MAGBIO Magnolia biondii HOM05D005438 ORTHO05D006744 5.5e-114 415.2 379 61.2
CAN.G532.38 Capsicum annuum HOM05D005438 ORTHO05D006744 4.6e-113 412.1 394 58.1
Ciclev10020644m.g Citrus clementina HOM05D005438 ORTHO05D006744 4.6e-113 412.1 400 57.0
Gohir.D12G233900 Gossypium hirsutum HOM05D005438 ORTHO05D006744 4.6e-113 412.1 395 58.0
Ca_10950_v3 Cicer arietinum L. HOM05D005438 ORTHO05D006744 6.0e-113 411.8 398 58.0
PGSC0003DMG400012320 Solanum tuberosum HOM05D005438 ORTHO05D006744 6.0e-113 411.8 392 58.9
Peaxi162Scf00074g01737 Petunia axillaris HOM05D005438 ORTHO05D006744 7.9e-113 411.4 394 58.6
Atru.BG.199.p Acer truncatum HOM05D005438 ORTHO05D006744 1.0e-112 411.0 393 58.3
Gorai.008G250200 Gossypium raimondii HOM05D005438 ORTHO05D006744 1.3e-112 410.6 395 58.2
Nitab4.5_0007906g0070 Nicotiana tabacum HOM05D005438 ORTHO05D006744 6.7e-112 408.3 396 57.8
PGR031G2565 Punica granatum HOM05D005438 ORTHO05D006744 6.7e-112 408.3 396 59.1
Nitab4.5_0003015g0090 Nicotiana tabacum HOM05D005438 ORTHO05D006744 1.9e-111 406.8 395 58.2
FAN18G2027 Fragaria x ananassa HOM05D005438 ORTHO05D006744 4.3e-111 405.6 393 58.3
FvH4_5g03190 Fragaria vesca HOM05D005438 ORTHO05D006744 5.7e-111 405.2 393 58.3
FAN08G1515 Fragaria x ananassa HOM05D005438 ORTHO05D006744 5.7e-111 405.2 394 57.9
Lj4g0011941 Lotus japonicus HOM05D005438 ORTHO05D006744 5.7e-111 405.2 407 57.7
Glyma.05G211800 Glycine max HOM05D005438 ORTHO05D006744 1.3e-110 404.1 398 58.3
vmacro11410 Vaccinium macrocarpon HOM05D005438 ORTHO05D006744 1.6e-110 403.7 393 58.8
FAN13G0364 Fragaria x ananassa HOM05D005438 ORTHO05D006744 2.1e-110 403.3 393 57.8
AUR62019752 Chenopodium quinoa HOM05D005438 ORTHO05D006744 6.3e-110 401.7 395 57.2
Hund11433 Selenicereus undatus HOM05D005438 ORTHO05D006744 1.4e-109 400.6 400 58.2
Medtr8g098940 Medicago truncatula HOM05D005438 ORTHO05D006744 1.8e-109 400.2 397 57.7
CANSAT21G0041 Cannabis sativa HOM05D005438 ORTHO05D006744 3.1e-109 399.4 403 57.1
FAN04G0810 Fragaria x ananassa HOM05D005438 ORTHO05D006744 3.1e-109 399.4 395 57.7
Solyc08g081580.4 Solanum lycopersicum HOM05D005438 ORTHO05D006744 3.1e-109 399.4 391 57.8
Sed0027839 Sechium edule HOM05D005438 ORTHO05D006744 4.5e-108 395.6 396 56.6
Psat7g029680 Pisum sativum HOM05D005438 ORTHO05D006744 5.9e-108 395.2 395 57.0
Sopen08g029890 Solanum pennellii HOM05D005438 ORTHO05D006744 7.6e-108 394.8 391 57.0
Lj2C178T12 Lonicera japonica HOM05D005438 ORTHO05D006744 1.0e-107 394.4 401 55.1
Lalb_Chr05g0224491 Lupinus albus HOM05D005438 ORTHO05D006744 2.2e-107 393.3 395 57.2
HanXRQChr02g0049721 Helianthus annuus HOM05D005438 ORTHO05D006744 3.8e-107 392.5 395 56.2
AUR62010754 Chenopodium quinoa HOM05D005438 ORTHO05D006744 5.0e-107 392.1 395 56.7
Manes.01G057900 Manihot esculenta HOM05D005438 ORTHO05D006744 1.9e-106 390.2 433 53.1
Migut.J01399 Erythranthe guttata HOM05D005438 ORTHO05D006744 3.2e-106 389.4 401 56.9
ClCG01G002320 Citrullus lanatus HOM05D005438 ORTHO05D006744 2.1e-105 386.7 396 55.6
DCAR_004611 Daucus carota HOM05D005438 ORTHO05D006744 2.7e-105 386.3 391 56.0
Potri.003G132600 Populus trichocarpa HOM05D005438 ORTHO05D006744 2.7e-105 386.3 440 50.7
TPR.G12953 Trifolium pratense HOM05D005438 ORTHO05D006744 7.9e-105 384.8 396 55.6
Cc08_g15250 Coffea canephora HOM05D005438 ORTHO05D006744 5.1e-104 382.1 404 54.7
Sabra03G0095000 Salix brachista HOM05D005438 ORTHO05D006744 1.5e-103 380.6 439 50.1
PSO478G3903 Papaver somniferum HOM05D005438 ORTHO05D006744 9.7e-103 377.9 414 53.6
Ah.12g051920 Amaranthus hybridus HOM05D005438 ORTHO05D006744 2.2e-102 376.7 408 52.5
ECA233G5263 Erigeron canadensis HOM05D005438 ORTHO05D006744 2.2e-102 376.7 399 54.6
PSO266G0069 Papaver somniferum HOM05D005438 ORTHO05D006744 4.1e-101 372.5 414 52.9
Lsat_1_v5_gn_3_8761 Lactuca sativa HOM05D005438 ORTHO05D006744 3.4e-100 369.4 396 54.3
PSO017G3503 Papaver somniferum HOM05D005438 ORTHO05D006744 4.5e-100 369.0 416 52.6
Gohir.A12G233400 Gossypium hirsutum HOM05D005438 ORTHO05D006744 3.8e-99 365.9 394 54.3
MD06G1091000 Malus domestica HOM05D005438 ORTHO05D006744 3.8e-99 365.9 390 52.8
THA.LOC104817794 Tarenaya hassleriana HOM05D005438 ORTHO05D006744 5.0e-99 365.5 412 52.2
ATR0661G541 Amborella trichopoda HOM05D005438 ORTHO05D006744 9.4e-98 361.3 427 50.4
Migut.A00720 Erythranthe guttata HOM05D005438 ORTHO05D006744 6.1e-97 358.6 394 52.8
EL10Ac5g12834 Beta vulgaris HOM05D005438 ORTHO05D006744 1.4e-96 357.5 374 53.7
Zm00001eb001860 Zea mays HOM05D005438 ORTHO05D006744 1.4e-96 357.5 412 51.0
SGA_v2.0_scaffold173G39139 Striga asiatica HOM05D005438 ORTHO05D006744 8.2e-94 348.2 420 50.5
HPP92_021018 Vanilla planifolia HOM05D005438 ORTHO05D006744 1.1e-93 347.8 391 52.9
Os03g0125300 Oryza sativa ssp. japonica HOM05D005438 ORTHO05D006744 5.3e-93 345.5 414 50.7
Aa31LG2G1070 Aethionema arabicum HOM05D005438 ORTHO05D006744 7.7e-92 341.7 419 50.8
CDE04G0809 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 7.7e-92 341.7 395 50.9
Sc01g0009850 Simmondsia chinensis HOM05D005438 ORTHO05D006744 1.4e-90 337.4 343 55.1
SEGI_20773 Sequoiadendron giganteum HOM05D005438 ORTHO05D006744 3.2e-90 336.3 461 44.9
AL2G11130 Arabidopsis lyrata HOM05D005438 ORTHO05D006744 2.7e-89 333.2 424 50.0
Carub.0002s0086 Capsella rubella HOM05D005438 ORTHO05D006744 7.9e-89 331.6 422 50.0
Thhalv10023525m.g Eutrema salsugineum HOM05D005438 ORTHO05D006744 3.0e-88 329.7 418 49.0
CARHR047000 Cardamine hirsuta HOM05D005438 ORTHO05D006744 1.1e-87 327.8 418 48.8
AT1G63980 Arabidopsis thaliana HOM05D005438 ORTHO05D006744 4.4e-87 325.9 432 48.4
CSS0015982 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 4.4e-87 325.9 391 51.4
BcaB07g31532 Brassica carinata HOM05D005438 ORTHO05D006744 2.2e-86 323.6 434 47.0
BcaB07g31422 Brassica carinata HOM05D005438 ORTHO05D006744 3.7e-86 322.8 429 48.0
A09p15160 Brassica napus HOM05D005438 ORTHO05D006744 1.1e-85 321.2 437 48.1
C09p18360 Brassica napus HOM05D005438 ORTHO05D006744 4.1e-85 319.3 438 48.4
BcaC04g22661 Brassica carinata HOM05D005438 ORTHO05D006744 5.3e-85 318.9 435 47.4
A09p14060 Brassica napus HOM05D005438 ORTHO05D006744 7.0e-85 318.5 434 47.7
HanXRQChr17g0533211 Helianthus annuus HOM05D005438 ORTHO05D006744 9.1e-85 318.2 404 48.5
BraA09t37158Z Brassica rapa HOM05D005438 ORTHO05D006744 4.5e-84 315.8 440 48.0
BraA09t37053Z Brassica rapa HOM05D005438 ORTHO05D006744 7.7e-84 315.1 439 47.8
BolC9t54729H Brassica oleracea HOM05D005438 ORTHO05D006744 1.9e-82 310.5 439 46.2
Sp2g00710 Schrenkiella parvula HOM05D005438 ORTHO05D006744 2.5e-82 310.1 437 45.5
C09p16950 Brassica napus HOM05D005438 ORTHO05D006744 9.4e-82 308.1 439 47.4
BolC9t54592H Brassica oleracea HOM05D005438 ORTHO05D006744 4.7e-81 305.8 439 46.5
Haze_08758 Corylus avellana HOM05D005438 ORTHO05D006744 5.2e-72 275.8 333 49.2
unitig_32.g10979 Utricularia gibba HOM05D005438 ORTHO05D006744 4.4e-71 272.7 351 47.9
SMO134G0098 Selaginella moellendorffii HOM05D005438 ORTHO05D006744 7.3e-58 228.8 385 38.7
Mapoly0090s0083 Marchantia polymorpha HOM05D005438 ORTHO05D006744 2.4e-53 213.8 509 34.2
Pp3c2_28530 Physcomitrium patens HOM05D005438 ORTHO05D006744 7.3e-50 202.2 431 35.7
AagrBONN_evm.TU.Sc2ySwM_344.4712 Anthoceros agrestis HOM05D005438 ORTHO05D006744 1.2e-49 201.4 538 33.5
Lsat_1_v5_gn_1_49360 Lactuca sativa HOM05D005438 ORTHO05D006744 2.0e-47 194.1 270 48.5
Lsat_1_v5_gn_5_103140 Lactuca sativa HOM05D005438 ORTHO05D006744 2.0e-47 194.1 270 48.5
Lsat_1_v5_gn_9_38321 Lactuca sativa HOM05D005438 ORTHO05D006744 2.0e-47 194.1 270 48.5
SHI31900 Sapria himalayana HOM05D005438 ORTHO05D006744 8.3e-46 188.7 288 44.8
BcaC04g22519 Brassica carinata HOM05D005438 ORTHO05D006744 3.9e-43 179.9 308 41.2
CSS0040427 Camellia sinensis var. sinensis HOM05D005438 ORTHO05D006744 6.6e-43 179.1 142 65.5
Actinidia28345 Actinidia chinensis HOM05D005438 ORTHO05D006744 2.1e-41 174.1 399 37.1
Cpa.g.sc631.4 Carica papaya HOM05D005438 ORTHO05D006744 7.5e-39 165.6 144 61.1
CDE12G0222 Ceratophyllum demersum HOM05D005438 ORTHO05D006744 1.6e-36 157.9 149 58.4
Pp3c7_27020 Physcomitrium patens HOM05D005438 ORTHO05D006744 4.3e-34 149.8 421 31.1
Cpa.g.c39085 Carica papaya HOM05D005438 ORTHO05D006744 1.0e-27 128.6 195 42.1
BcaNung05361 Brassica carinata HOM05D005438 ORTHO05D006744 3.9e-27 126.7 232 40.9
CBR_g35011 Chara braunii HOM05D005438 ORTHO05D006744 5.8e-23 112.8 352 30.1
ATR0661G444 Amborella trichopoda HOM05D005438 ORTHO05D006744 3.8e-22 110.2 211 37.4
Cre07.g347300 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D021338 1.1e-18 98.6 401 28.9
Cre07.g347400 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 1.1e-18 98.6 401 28.9
ClCG01G002340 Citrullus lanatus HOM05D005438 ORTHO05D006744 8.4e-14 82.4 134 36.6
ECA246G3112 Erigeron canadensis HOM05D005438 ORTHO05D006744 4.2e-13 80.1 113 41.6
HanXRQChr16g0521071 Helianthus annuus HOM05D005438 ORTHO05D006744 2.3e-11 74.3 39 87.2
AagrBONN_evm.TU.Sc2ySwM_344.4702 Anthoceros agrestis HOM05D005438 ORTHO05D006744 2.4e-08 64.3 132 34.1
Cre01.g054000 Chlamydomonas reinhardtii HOM05D005438 ORTHO05D006744 1.3e-06 58.5 77 40.3
MCO11G547 Micromonas commoda HOM05D005438 ORTHO05D006744 8.4e-06 55.8 78 41.0


User provided reference genes

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