Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g01650 Nelumbo nucifera HOM05D006032 ORTHO05D007544 6.2e-146 520.8 264 100.0
Atru.chr5.551 Acer truncatum HOM05D006032 ORTHO05D007544 7.9e-117 424.1 264 77.7
GSVIVG01027006001 Vitis vinifera HOM05D006032 ORTHO05D007544 2.2e-114 416.0 262 77.9
PGR031G1164 Punica granatum HOM05D006032 ORTHO05D007544 4.1e-113 411.8 263 76.8
Ciclev10021696m.g Citrus clementina HOM05D006032 ORTHO05D007544 1.5e-112 409.8 264 76.5
COL.COLO4_12764 Corchorus olitorius HOM05D006032 ORTHO05D007544 2.6e-112 409.1 266 76.3
Haze_15552 Corylus avellana HOM05D006032 ORTHO05D007544 5.9e-112 407.9 263 77.6
Cfa003882 Carpinus fangiana HOM05D006032 ORTHO05D007544 1.9e-110 402.9 263 76.4
Thecc.01G353900 Theobroma cacao HOM05D006032 ORTHO05D007544 9.4e-110 400.6 267 74.2
Manes.01G253200 Manihot esculenta HOM05D006032 ORTHO05D007544 2.7e-109 399.1 265 75.1
Hma1.2p1_2961F.1_g330870 Hydrangea macrophylla HOM05D006032 ORTHO05D007544 6.1e-109 397.9 263 75.7
Cpa.g.sc184.23 Carica papaya HOM05D006032 ORTHO05D007544 7.9e-109 397.5 262 74.8
Nitab4.5_0002682g0080 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.0e-108 397.1 265 74.7
TWI59G0434 Tripterygium wilfordii HOM05D006032 ORTHO05D007544 1.8e-108 396.4 265 74.0
CsaV3_3G008690 Cucumis sativus L. HOM05D006032 ORTHO05D007544 3.0e-108 395.6 268 74.3
CiPaw.01G065600 Carya illinoinensis HOM05D006032 ORTHO05D007544 3.9e-108 395.2 263 75.3
TAR629G0912 Trochodendron aralioides HOM05D006032 ORTHO05D007544 1.1e-107 393.7 264 74.6
ClCG05G001320 Citrullus lanatus HOM05D006032 ORTHO05D007544 2.6e-107 392.5 266 74.8
Nitab4.5_0006802g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 5.7e-107 391.3 265 73.2
CSS0027447 Camellia sinensis var. sinensis HOM05D006032 ORTHO05D007544 1.7e-106 389.8 261 72.8
MELO3C006088.2 Cucumis melo HOM05D006032 ORTHO05D007544 2.2e-106 389.4 268 72.8
CANSAT56G0440 Cannabis sativa HOM05D006032 ORTHO05D007544 2.8e-106 389.0 265 73.2
MSTRG.20857 Avicennia marina HOM05D006032 ORTHO05D007544 2.4e-105 386.0 264 72.3
Sopen09g002430 Solanum pennellii HOM05D006032 ORTHO05D007544 7.0e-105 384.4 263 74.9
PSO782G5129 Papaver somniferum HOM05D006032 ORTHO05D007544 9.1e-105 384.0 261 75.9
DCAR_006944 Daucus carota HOM05D006032 ORTHO05D007544 1.2e-104 383.6 262 73.3
Cc02_g38440 Coffea canephora HOM05D006032 ORTHO05D007544 3.5e-104 382.1 265 72.8
Lj7A509T108 Lonicera japonica HOM05D006032 ORTHO05D007544 4.5e-104 381.7 262 71.4
Sabra02G0122600 Salix brachista HOM05D006032 ORTHO05D007544 4.5e-104 381.7 267 72.7
PGSC0003DMG400001748 Solanum tuberosum HOM05D006032 ORTHO05D007544 7.7e-104 380.9 263 74.1
Glyma.18G237400 Glycine max HOM05D006032 ORTHO05D007544 1.0e-103 380.6 259 71.8
arahy.Tifrunner.gnm1.ann1.XQ5AKE Arachis hypogaea HOM05D006032 ORTHO05D007544 1.3e-103 380.2 269 69.9
Eucgr.D02319 Eucalyptus grandis HOM05D006032 ORTHO05D007544 2.9e-103 379.0 264 71.2
CAN.G1091.3 Capsicum annuum HOM05D006032 ORTHO05D007544 3.8e-103 378.6 274 70.8
Lsat_1_v5_gn_7_3801 Lactuca sativa HOM05D006032 ORTHO05D007544 6.5e-103 377.9 258 69.8
Prupe.2G175800 Prunus persica HOM05D006032 ORTHO05D007544 8.5e-103 377.5 266 72.9
Lalb_Chr19g0126911 Lupinus albus HOM05D006032 ORTHO05D007544 1.1e-102 377.1 261 70.1
Potri.002G154600 Populus trichocarpa HOM05D006032 ORTHO05D007544 1.1e-102 377.1 265 71.7
Glyma.09G255500 Glycine max HOM05D006032 ORTHO05D007544 1.5e-102 376.7 259 70.7
arahy.Tifrunner.gnm1.ann1.S0M071 Arachis hypogaea HOM05D006032 ORTHO05D007544 1.9e-102 376.3 268 70.1
THA.LOC104817034 Tarenaya hassleriana HOM05D006032 ORTHO05D007544 2.5e-102 375.9 263 71.5
Aqoxy7G00233 Aquilegia oxysepala HOM05D006032 ORTHO05D007544 3.2e-102 375.6 266 72.6
Carub.0006s3637 Capsella rubella HOM05D006032 ORTHO05D007544 3.2e-102 375.6 264 68.6
AL6G52090 Arabidopsis lyrata HOM05D006032 ORTHO05D007544 9.4e-102 374.0 264 68.9
Sp6g00830 Schrenkiella parvula HOM05D006032 ORTHO05D007544 1.2e-101 373.6 265 68.3
Sed0022476 Sechium edule HOM05D006032 ORTHO05D007544 1.2e-101 373.6 266 70.7
QL04p055082 Quercus lobata HOM05D006032 ORTHO05D007544 1.6e-101 373.2 264 72.3
AT4G01310 Arabidopsis thaliana HOM05D006032 ORTHO05D007544 2.7e-101 372.5 266 68.0
PSO478G3538 Papaver somniferum HOM05D006032 ORTHO05D007544 3.6e-101 372.1 262 73.7
CARHR249010 Cardamine hirsuta HOM05D006032 ORTHO05D007544 4.7e-101 371.7 265 68.3
Thhalv10028885m.g Eutrema salsugineum HOM05D006032 ORTHO05D007544 6.1e-101 371.3 265 67.9
Gohir.A07G140700 Gossypium hirsutum HOM05D006032 ORTHO05D007544 8.0e-101 370.9 269 69.1
Gohir.D07G146100 Gossypium hirsutum HOM05D006032 ORTHO05D007544 1.0e-100 370.5 263 70.0
Gorai.001G158300 Gossypium raimondii HOM05D006032 ORTHO05D007544 1.0e-100 370.5 263 70.0
ECA236G4677 Erigeron canadensis HOM05D006032 ORTHO05D007544 1.4e-100 370.2 260 67.7
HanXRQChr06g0170291 Helianthus annuus HOM05D006032 ORTHO05D007544 1.4e-100 370.2 257 68.9
BcaB01g02152 Brassica carinata HOM05D006032 ORTHO05D007544 5.2e-100 368.2 265 69.4
AUR62022608 Chenopodium quinoa HOM05D006032 ORTHO05D007544 8.8e-100 367.5 265 72.1
BcaC01g06855 Brassica carinata HOM05D006032 ORTHO05D007544 1.1e-99 367.1 265 68.7
BolC3t16171H Brassica oleracea HOM05D006032 ORTHO05D007544 1.1e-99 367.1 265 68.7
Rhsim12G0138500 Rhododendron simsii HOM05D006032 ORTHO05D007544 2.0e-99 366.3 260 69.2
SalBow3G2277 Salvia bowleyana HOM05D006032 ORTHO05D007544 2.6e-99 365.9 263 70.0
C03p38990 Brassica napus HOM05D006032 ORTHO05D007544 3.3e-99 365.5 265 68.7
AUR62004402 Chenopodium quinoa HOM05D006032 ORTHO05D007544 4.4e-99 365.2 265 71.7
Sc01g0003280 Simmondsia chinensis HOM05D006032 ORTHO05D007544 2.2e-98 362.8 268 69.8
CDE04G3178 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 3.7e-98 362.1 267 70.0
VMungo1383G0296 Vigna mungo HOM05D006032 ORTHO05D007544 3.7e-98 362.1 261 70.5
MD01G1069800 Malus domestica HOM05D006032 ORTHO05D007544 4.8e-98 361.7 265 70.6
BcaB01g02282 Brassica carinata HOM05D006032 ORTHO05D007544 6.3e-98 361.3 265 68.7
BcaC04g24141 Brassica carinata HOM05D006032 ORTHO05D007544 8.2e-98 360.9 265 68.3
FAN06G2046 Fragaria x ananassa HOM05D006032 ORTHO05D007544 8.2e-98 360.9 264 68.6
FAN06G3864 Fragaria x ananassa HOM05D006032 ORTHO05D007544 8.2e-98 360.9 264 68.6
CDE12G0723 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 1.1e-97 360.5 258 71.3
RcHm_v2.0_Chr1g0357301 Rosa chinensis HOM05D006032 ORTHO05D007544 1.1e-97 360.5 264 68.6
FvH4_7g15110 Fragaria vesca HOM05D006032 ORTHO05D007544 1.4e-97 360.1 264 68.2
Phvul.008G059200 Phaseolus vulgaris HOM05D006032 ORTHO05D007544 1.4e-97 360.1 260 69.2
FAN03G1341 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.4e-97 359.4 264 68.2
Oeu054338.1 Olea europaea HOM05D006032 ORTHO05D007544 7.0e-97 357.8 265 68.7
FAN10G0977 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.6e-96 356.7 264 68.2
FAN10G2244 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.6e-96 356.7 264 68.2
ATR0661G584 Amborella trichopoda HOM05D006032 ORTHO05D007544 2.7e-96 355.9 247 72.5
Migut.B01790 Erythranthe guttata HOM05D006032 ORTHO05D007544 2.7e-96 355.9 263 66.9
SGA_v2.0_scaffold95G28814 Striga asiatica HOM05D006032 ORTHO05D007544 1.7e-95 353.2 276 66.3
MD07G1132700 Malus domestica HOM05D006032 ORTHO05D007544 2.2e-95 352.8 265 69.1
Medtr7g078800 Medicago truncatula HOM05D006032 ORTHO05D007544 3.8e-95 352.1 264 67.4
Ca_00819_v3 Cicer arietinum L. HOM05D006032 ORTHO05D007544 8.5e-95 350.9 266 66.2
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 4.2e-94 348.6 242 70.2
Lj4g0026145 Lotus japonicus HOM05D006032 ORTHO05D007544 4.2e-94 348.6 268 66.8
TPR.G22296 Trifolium pratense HOM05D006032 ORTHO05D007544 4.2e-94 348.6 267 66.7
EL10Ac1g00366 Beta vulgaris HOM05D006032 ORTHO05D007544 3.6e-93 345.5 310 61.3
Psat3g107160 Pisum sativum HOM05D006032 ORTHO05D007544 1.8e-92 343.2 267 65.9
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 2.3e-92 342.8 254 68.5
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 3.0e-92 342.4 254 68.5
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 7.5e-91 337.8 252 67.5
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 7.5e-91 337.8 252 67.5
HPP92_025634 Vanilla planifolia HOM05D006032 ORTHO05D007544 3.1e-89 332.4 221 71.0
Potri.014G089100 Populus trichocarpa HOM05D006032 ORTHO05D007544 1.0e-87 327.4 262 65.6
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 5.5e-86 321.6 265 64.9
unitig_22.g5344 Utricularia gibba HOM05D003213 ORTHO05D003693 1.0e-84 317.4 228 68.0
Peaxi162Scf00815g00338 Petunia axillaris HOM05D006032 ORTHO05D007544 9.8e-83 310.8 179 81.6
Os03g0125000 Oryza sativa ssp. japonica HOM05D006032 ORTHO05D007544 4.9e-82 308.5 219 66.7
Hund27251 Selenicereus undatus HOM05D006032 ORTHO05D007544 1.8e-81 306.6 241 65.6
Zm00001eb001840 Zea mays HOM05D006032 ORTHO05D007544 5.4e-81 305.1 217 67.7
vmacro20901 Vaccinium macrocarpon HOM05D006032 ORTHO05D007544 5.9e-80 301.6 260 60.8
Dinv32511 Davidia involucrata HOM05D006032 ORTHO05D007544 1.2e-75 287.3 223 64.1
MBI04_g41504_MAGBIO Magnolia biondii HOM05D006032 ORTHO05D007544 3.7e-74 282.3 266 58.6
A03p31970 Brassica napus HOM05D006032 ORTHO05D007544 4.6e-72 275.4 200 67.5
BraA03t12369Z Brassica rapa HOM05D006032 ORTHO05D007544 4.6e-72 275.4 200 67.5
FAN01G2970 Fragaria x ananassa HOM05D006032 ORTHO05D007544 3.6e-69 265.8 195 66.7
Mapoly0001s0334 Marchantia polymorpha HOM05D006032 ORTHO05D007544 8.9e-68 261.2 225 56.0
Pp3c1_25850 Physcomitrium patens HOM05D006032 ORTHO05D007544 7.5e-67 258.1 265 50.2
AagrBONN_evm.TU.Sc2ySwM_228.1445 Anthoceros agrestis HOM05D006032 ORTHO05D007544 1.1e-65 254.2 188 60.6
Pp3c2_17110 Physcomitrium patens HOM05D006032 ORTHO05D007544 5.4e-65 251.9 225 52.4
SMO358G0099 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 8.6e-63 244.6 177 62.1
Solyc09g007560.4 Solanum lycopersicum HOM05D006032 ORTHO05D007544 7.3e-62 241.5 177 72.3
MSTRG.17292 Avicennia marina HOM05D006032 ORTHO05D007544 5.1e-55 218.8 133 78.9
SEGI_08351 Sequoiadendron giganteum HOM05D006032 ORTHO05D007544 8.1e-53 211.5 141 68.1
Haze_27649 Corylus avellana HOM05D006032 ORTHO05D007544 6.2e-45 185.3 153 54.9
COL.COLO4_27391 Corchorus olitorius HOM05D006032 ORTHO05D007544 1.1e-44 184.5 114 80.7
C02p38190 Brassica napus HOM05D006032 ORTHO05D007544 4.4e-43 179.1 265 43.4
BolC2t09834H Brassica oleracea HOM05D006032 ORTHO05D007544 4.4e-43 179.1 265 43.4
BcaC03g16053 Brassica carinata HOM05D006032 ORTHO05D007544 7.6e-43 178.3 265 43.4
Rhsim01G0165400 Rhododendron simsii HOM05D006032 ORTHO05D007544 3.2e-41 172.9 158 58.9
Cfa021143 Carpinus fangiana HOM05D006032 ORTHO05D001488 2.1e-40 170.2 217 41.5
Sabra14G0064700 Salix brachista HOM05D006032 ORTHO05D007544 6.0e-40 168.7 112 74.1
Actinidia02824 Actinidia chinensis HOM05D006032 ORTHO05D007544 6.6e-31 138.7 89 76.4
SMO196G0051 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 5.3e-28 129.0 173 38.2
Nitab4.5_0000681g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 5.8e-27 125.6 76 77.6
Nitab4.5_0000681g0060 Nicotiana tabacum HOM05D006032 ORTHO05D007544 5.1e-23 112.5 70 75.7
VMungo1309G2152 Vigna mungo HOM05D006032 ORTHO05D007544 8.1e-21 105.1 81 66.7
Cfa024600 Carpinus fangiana HOM05D006032 ORTHO05D122942 1.9e-17 94.0 169 29.6
VMungo0647G0507 Vigna mungo HOM05D006032 ORTHO05D007227 3.0e-15 86.7 58 70.7
Psat2g092280 Pisum sativum HOM05D006032 ORTHO05D007544 1.1e-12 78.2 60 60.0
Rhsim12G0138600 Rhododendron simsii HOM05D006032 ORTHO05D007544 5.3e-12 75.9 86 50.0
Dinv43855 Davidia involucrata HOM05D006032 ORTHO05D007544 1.4e-09 67.8 39 76.9
unitig_8.g3788 Utricularia gibba HOM05D006032 ORTHO05D007544 6.1e-08 62.4 102 36.3
FvH4_5g19211 Fragaria vesca HOM05D006032 ORTHO05D197553 7.9e-08 62.0 45 68.9
Cfa027004 Carpinus fangiana HOM05D001556 ORTHO05D001505 1.5e-06 57.8 139 28.8


User provided reference genes

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