Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g01586 Nelumbo nucifera HOM05D004502 ORTHO05D005579 0.0e+00 1681.0 814 100.0
Nn6g33342 Nelumbo nucifera HOM05D004502 ORTHO05D005579 0.0e+00 1224.5 763 77.2
TAR629G1389 Trochodendron aralioides HOM05D004502 ORTHO05D005579 0.0e+00 1189.5 829 70.0
GSVIVG01027000001 Vitis vinifera HOM05D004502 ORTHO05D005579 0.0e+00 1097.8 818 64.9
Dinv32500 Davidia involucrata HOM05D004502 ORTHO05D005579 0.0e+00 1076.2 871 62.5
CiPaw.01G063800 Carya illinoinensis HOM05D004502 ORTHO05D005579 1.0e-308 1063.1 818 63.4
Haze_15535 Corylus avellana HOM05D004502 ORTHO05D005579 7.4e-307 1057.0 822 63.4
Hma1.2p1_0071F.1_g037745 Hydrangea macrophylla HOM05D004502 ORTHO05D005579 7.0e-305 1050.4 833 62.5
Actinidia14191 Actinidia chinensis HOM05D004502 ORTHO05D005579 2.0e-304 1048.9 838 62.2
Actinidia20888 Actinidia chinensis HOM05D004502 ORTHO05D005579 2.6e-304 1048.5 798 64.8
Ciclev10018851m.g Citrus clementina HOM05D004502 ORTHO05D005579 1.9e-302 1042.3 814 61.2
Cfa003897 Carpinus fangiana HOM05D004502 ORTHO05D005579 2.1e-301 1038.9 796 63.7
Potri.014G087300 Populus trichocarpa HOM05D004502 ORTHO05D005579 1.4e-300 1036.2 816 62.3
QL04p054124 Quercus lobata HOM05D004502 ORTHO05D005579 6.7e-300 1033.9 817 62.4
TWI23G1305 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 5.3e-297 1024.2 816 61.9
CSS0020518 Camellia sinensis var. sinensis HOM05D004502 ORTHO05D005579 3.5e-296 1021.5 774 65.2
Cc02_g38300 Coffea canephora HOM05D004502 ORTHO05D005579 5.0e-295 1017.7 801 61.0
RcHm_v2.0_Chr1g0356801 Rosa chinensis HOM05D004502 ORTHO05D005579 4.8e-290 1001.1 830 59.6
Atru.chr5.526 Acer truncatum HOM05D004502 ORTHO05D005579 1.8e-289 999.2 826 58.1
Hund16660 Selenicereus undatus HOM05D004502 ORTHO05D005579 3.1e-289 998.4 828 59.2
Rhsim07G0013000 Rhododendron simsii HOM05D004502 ORTHO05D005579 7.0e-289 997.3 834 59.4
Cpa.g.sc11.33 Carica papaya HOM05D004502 ORTHO05D005579 1.7e-287 992.6 820 58.9
Thecc.01G356300 Theobroma cacao HOM05D004502 ORTHO05D005579 8.0e-285 983.8 773 62.2
Glyma.09G257000 Glycine max HOM05D004502 ORTHO05D005579 2.3e-284 982.2 823 59.8
Sabra14G0063300 Salix brachista HOM05D004502 ORTHO05D005579 1.2e-283 979.9 808 59.8
HanXRQChr17g0562371 Helianthus annuus HOM05D004502 ORTHO05D005579 7.5e-283 977.2 819 59.3
Lj9C585G14 Lonicera japonica HOM05D004502 ORTHO05D005579 7.5e-283 977.2 817 60.3
Peaxi162Scf00020g01028 Petunia axillaris HOM05D004502 ORTHO05D005579 2.2e-282 975.7 819 59.7
Oeu052960.2 Olea europaea HOM05D004502 ORTHO05D005579 2.8e-282 975.3 832 58.7
Glyma.18G235400 Glycine max HOM05D004502 ORTHO05D005579 3.7e-282 974.9 823 59.1
MD07G1133800 Malus domestica HOM05D004502 ORTHO05D005579 1.1e-281 973.4 823 58.1
Eucgr.E00113 Eucalyptus grandis HOM05D004502 ORTHO05D005579 2.7e-280 968.8 821 59.6
VMungo1383G3442 Vigna mungo HOM05D004502 ORTHO05D005579 3.5e-280 968.4 823 59.2
FvH4_7g14850 Fragaria vesca HOM05D004502 ORTHO05D005579 1.0e-279 966.8 831 57.6
Gohir.D11G095000 Gossypium hirsutum HOM05D004502 ORTHO05D005579 2.3e-279 965.7 817 58.4
Gorai.007G101400 Gossypium raimondii HOM05D004502 ORTHO05D005579 5.0e-279 964.5 817 58.5
Duzib133G0971 Durio zibethinus HOM05D004502 ORTHO05D005579 1.1e-278 963.4 833 58.3
Aqoxy7G00260 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 1.2e-277 959.9 860 57.6
Manes.01G254800 Manihot esculenta HOM05D004502 ORTHO05D005579 1.6e-277 959.5 747 64.3
Gorai.004G159100 Gossypium raimondii HOM05D004502 ORTHO05D005579 2.8e-277 958.7 831 57.9
CANSAT56G0477 Cannabis sativa HOM05D004502 ORTHO05D005579 2.3e-276 955.7 764 61.1
PGR042G2088 Punica granatum HOM05D004502 ORTHO05D005579 3.0e-276 955.3 826 58.8
Medtr8g028875 Medicago truncatula HOM05D004502 ORTHO05D005579 5.2e-276 954.5 827 58.0
Migut.B01778 Erythranthe guttata HOM05D004502 ORTHO05D005579 2.6e-275 952.2 824 57.4
SalBow3G3684 Salvia bowleyana HOM05D004502 ORTHO05D005579 7.5e-275 950.7 809 56.7
arahy.Tifrunner.gnm1.ann1.V8X9PU Arachis hypogaea HOM05D004502 ORTHO05D005579 2.9e-274 948.7 840 56.5
Glyma.07G068700 Glycine max HOM05D004502 ORTHO05D005579 2.9e-274 948.7 823 58.1
Lj3g0021790 Lotus japonicus HOM05D004502 ORTHO05D005579 2.4e-273 945.7 821 58.0
arahy.Tifrunner.gnm1.ann1.0GN1Z3 Arachis hypogaea HOM05D004502 ORTHO05D005579 2.7e-272 942.2 828 56.8
Sc01g0003530 Simmondsia chinensis HOM05D004502 ORTHO05D005579 4.6e-272 941.4 764 59.6
TPR.G37813 Trifolium pratense HOM05D004502 ORTHO05D005579 1.7e-271 939.5 813 56.7
ECA234G4483 Erigeron canadensis HOM05D004502 ORTHO05D005579 2.3e-271 939.1 802 58.9
FAN01G2073 Fragaria x ananassa HOM05D004502 ORTHO05D005579 3.9e-271 938.3 831 56.7
Phvul.010G100800 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 3.9e-271 938.3 818 57.6
Lsat_1_v5_gn_4_34660 Lactuca sativa HOM05D004502 ORTHO05D005579 1.1e-270 936.8 811 57.5
HanXRQChr06g0170231 Helianthus annuus HOM05D004502 ORTHO05D005579 1.5e-270 936.4 819 56.9
VMungo0331G1775 Vigna mungo HOM05D004502 ORTHO05D005579 1.5e-270 936.4 833 55.9
Solyc01g094860.4 Solanum lycopersicum HOM05D004502 ORTHO05D005579 1.9e-270 936.0 819 56.5
Sopen01g038640 Solanum pennellii HOM05D004502 ORTHO05D005579 2.5e-270 935.6 819 56.5
Psat3g107400 Pisum sativum HOM05D004502 ORTHO05D005579 4.3e-270 934.9 818 56.0
CsaV3_6G000710 Cucumis sativus L. HOM05D004502 ORTHO05D005579 7.3e-270 934.1 834 56.7
FAN10G2351 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.8e-269 932.2 842 56.3
Duzib138G1080 Durio zibethinus HOM05D004502 ORTHO05D005579 9.8e-267 923.7 776 59.5
Sed0014632 Sechium edule HOM05D004502 ORTHO05D005579 2.9e-266 922.2 814 56.8
CAN.G78.100 Capsicum annuum HOM05D004502 ORTHO05D005579 6.4e-266 921.0 828 56.3
Sed0001889 Sechium edule HOM05D004502 ORTHO05D005579 1.2e-264 916.8 824 56.6
vmacro13259 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 1.6e-264 916.4 772 58.7
FAN06G1095 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.7e-263 912.9 874 53.7
Lalb_Chr17g0339421 Lupinus albus HOM05D004502 ORTHO05D005579 5.0e-263 911.4 822 55.8
PSO478G3176 Papaver somniferum HOM05D004502 ORTHO05D005579 7.3e-262 907.5 830 55.5
PSO782G3525 Papaver somniferum HOM05D004502 ORTHO05D005579 3.6e-261 905.2 828 55.8
FAN06G0667 Fragaria x ananassa HOM05D004502 ORTHO05D005579 4.7e-261 904.8 831 55.0
Gohir.A11G090500 Gossypium hirsutum HOM05D004502 ORTHO05D005579 4.7e-261 904.8 776 58.0
ECA236G0795 Erigeron canadensis HOM05D004502 ORTHO05D005579 1.4e-260 903.3 780 58.7
arahy.Tifrunner.gnm1.ann1.C1BLFK Arachis hypogaea HOM05D004502 ORTHO05D005579 3.1e-260 902.1 821 56.4
MSTRG.17285 Avicennia marina HOM05D004502 ORTHO05D005579 3.1e-260 902.1 790 55.8
TPR.G17909 Trifolium pratense HOM05D004502 ORTHO05D005579 3.1e-260 902.1 823 55.8
Phvul.008G060500 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 7.5e-259 897.5 740 60.0
ClCG06G003550 Citrullus lanatus HOM05D004502 ORTHO05D005579 3.2e-257 892.1 833 55.0
COL.COLO4_12736 Corchorus olitorius HOM05D004502 ORTHO05D005579 4.6e-256 888.3 686 63.6
AUR62004387 Chenopodium quinoa HOM05D004502 ORTHO05D005579 1.7e-255 886.3 775 55.6
PGSC0003DMG400000181 Solanum tuberosum HOM05D004502 ORTHO05D005579 1.7e-255 886.3 820 54.5
Aa31LG1G27460 Aethionema arabicum HOM05D004502 ORTHO05D005579 1.9e-254 882.9 829 54.3
Prupe.2G173600 Prunus persica HOM05D004502 ORTHO05D005579 1.2e-253 880.2 717 60.0
Thhalv10001314m.g Eutrema salsugineum HOM05D004502 ORTHO05D005579 1.8e-252 876.3 829 54.0
Rhsim01G0146800 Rhododendron simsii HOM05D004502 ORTHO05D005579 1.8e-252 876.3 842 55.0
Carub.0004s2875 Capsella rubella HOM05D004502 ORTHO05D005579 3.1e-252 875.5 832 53.8
CARHR141310 Cardamine hirsuta HOM05D004502 ORTHO05D005579 6.8e-252 874.4 829 53.7
AT2G46060 Arabidopsis thaliana HOM05D004502 ORTHO05D005579 1.5e-251 873.2 826 53.9
THA.LOC104802040 Tarenaya hassleriana HOM05D004502 ORTHO05D005579 1.5e-251 873.2 822 54.7
FAN10G2492 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.0e-251 872.8 842 53.7
AL4G45280 Arabidopsis lyrata HOM05D004502 ORTHO05D005579 4.9e-250 868.2 829 54.0
Sp4g28120 Schrenkiella parvula HOM05D004502 ORTHO05D005579 3.2e-249 865.5 830 54.0
SGA_v2.0_scaffold95G28821 Striga asiatica HOM05D004502 ORTHO05D005579 2.1e-248 862.8 813 53.5
Ca_23605_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 5.6e-246 854.7 718 58.1
arahy.Tifrunner.gnm1.ann1.04AGHE Arachis hypogaea HOM05D004502 ORTHO05D005579 7.3e-246 854.4 821 54.2
Nitab4.5_0010258g0020 Nicotiana tabacum HOM05D004502 ORTHO05D005579 1.1e-244 850.5 765 56.5
A05p06020 Brassica napus HOM05D004502 ORTHO05D005579 3.8e-242 842.0 827 52.5
C04p06950 Brassica napus HOM05D004502 ORTHO05D005579 8.4e-242 840.9 828 52.4
BolC4t22316H Brassica oleracea HOM05D004502 ORTHO05D005579 8.4e-242 840.9 828 52.4
MBI18_g32047_MAGBIO Magnolia biondii HOM05D004502 ORTHO05D005579 1.9e-241 839.7 909 49.6
BraA05t19565Z Brassica rapa HOM05D004502 ORTHO05D005579 7.1e-241 837.8 816 52.3
Ca_00829_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 2.3e-239 832.8 716 57.1
BraA04t18886Z Brassica rapa HOM05D004502 ORTHO05D005579 9.6e-238 827.4 809 53.3
HPP92_022633 Vanilla planifolia HOM05D004502 ORTHO05D005579 2.8e-237 825.9 850 49.4
A04p34250 Brassica napus HOM05D004502 ORTHO05D005579 9.0e-236 820.8 835 51.7
ATR0680G297 Amborella trichopoda HOM05D004502 ORTHO05D005579 3.2e-233 812.4 847 49.9
Os10g0446200 Oryza sativa ssp. japonica HOM05D004502 ORTHO05D005579 4.2e-233 812.0 822 49.8
C04p72070 Brassica napus HOM05D004502 ORTHO05D005579 1.0e-231 807.4 856 50.4
vmacro20915 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 1.9e-230 803.1 654 61.3
Gohir.D08G153200 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.2e-227 793.9 695 57.8
Nitab4.5_0000583g0350 Nicotiana tabacum HOM05D004502 ORTHO05D005579 2.5e-222 776.2 826 50.2
Psat4g212960 Pisum sativum HOM05D004502 ORTHO05D005579 2.5e-222 776.2 680 56.9
AUR62022593 Chenopodium quinoa HOM05D004502 ORTHO05D005579 5.8e-219 765.0 668 55.4
TWI60G0172 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 4.6e-216 755.4 809 49.3
QL12p032431 Quercus lobata HOM05D004502 ORTHO05D005579 2.8e-213 746.1 836 48.3
EL10Ac1g00390 Beta vulgaris HOM05D004502 ORTHO05D005579 5.3e-204 715.3 833 45.6
Zm00001eb222430 Zea mays HOM05D004502 ORTHO05D005579 1.0e-199 701.0 687 51.5
COL.COLO4_34496 Corchorus olitorius HOM05D004502 ORTHO05D005579 2.0e-190 670.2 792 43.6
MD01G1067200 Malus domestica HOM05D004502 ORTHO05D005579 7.0e-188 661.8 601 53.6
MELO3C021198.2 Cucumis melo HOM05D004502 ORTHO05D005579 2.0e-187 660.2 517 62.3
Aqoxy7G00261 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 1.1e-185 654.4 712 49.6
SHI13432 Sapria himalayana HOM05D004502 ORTHO05D005579 4.0e-183 646.0 714 49.2
TAR375G0606 Trochodendron aralioides HOM05D004502 ORTHO05D005579 5.9e-179 632.1 459 65.6
FAN03G0719 Fragaria x ananassa HOM05D004502 ORTHO05D005579 7.0e-164 582.0 716 43.9
DCAR_008618 Daucus carota HOM05D004502 ORTHO05D005579 4.3e-153 546.2 385 68.6
Ah.05g180370 Amaranthus hybridus HOM05D004502 ORTHO05D005579 1.6e-139 501.1 533 47.8
AUR62010714 Chenopodium quinoa HOM05D004502 ORTHO05D005579 2.4e-135 487.3 720 39.0
Gohir.A08G131800 Gossypium hirsutum HOM05D004502 ORTHO05D005579 3.8e-133 479.9 341 68.3
Glyma.16G034551 Glycine max HOM05D004502 ORTHO05D005579 4.7e-128 463.0 339 67.8
Haze_08811 Corylus avellana HOM05D004502 ORTHO05D005579 8.7e-122 442.2 506 47.0
Gohir.A08G131900 Gossypium hirsutum HOM05D004502 ORTHO05D005579 2.8e-112 410.6 441 49.2
CDE06G0820 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 6.2e-104 382.9 353 51.0
unitig_26.g9298 Utricularia gibba HOM05D004502 ORTHO05D005579 9.0e-103 379.0 319 57.7
Mapoly0035s0107 Marchantia polymorpha HOM05D004502 ORTHO05D005579 3.8e-101 373.6 785 30.3
Pp3c10_11170 Physcomitrium patens HOM05D004502 ORTHO05D005579 2.5e-97 360.9 889 28.8
unitig_26.g9297 Utricularia gibba HOM05D004502 ORTHO05D005579 1.4e-95 355.1 472 40.5
Hund14837 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.1e-92 345.5 461 39.5
Glyma.16G034476 Glycine max HOM05D004502 ORTHO05D005579 1.3e-90 338.6 371 48.0
SEGI_07374 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 1.1e-79 302.4 509 32.0
Cc08_g14990 Coffea canephora HOM05D004502 ORTHO05D005579 1.2e-75 288.9 298 49.7
MELO3C021197.2 Cucumis melo HOM05D004502 ORTHO05D005579 8.8e-66 256.1 290 46.2
COL.COLO4_28934 Corchorus olitorius HOM05D004502 ORTHO05D005579 5.5e-60 236.9 200 59.5
vmacro20916 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 9.1e-55 219.5 178 65.2
MD01G1067000 Malus domestica HOM05D004502 ORTHO05D005579 2.0e-49 201.8 179 58.1
MELO3C031211.2 Cucumis melo HOM05D004502 ORTHO05D005579 2.3e-29 135.2 143 46.2
CBR_g17145 Chara braunii HOM05D004502 ORTHO05D005579 3.3e-28 131.3 116 46.6
Hund14845 Selenicereus undatus HOM05D004502 ORTHO05D005579 2.3e-21 108.6 111 51.4
CDE06G0272 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 7.3e-20 103.6 87 66.7
TPR.G24958 Trifolium pratense HOM05D004502 ORTHO05D005579 1.6e-19 102.4 113 46.0
Hund14838 Selenicereus undatus HOM05D004502 ORTHO05D005579 8.4e-16 90.1 146 37.0
Thecc.03G282200 Theobroma cacao HOM05D004502 ORTHO05D005579 8.1e-11 73.6 199 29.1
SEGI_31877 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 1.4e-10 72.8 54 50.0
arahy.Tifrunner.gnm1.ann1.R57FTB Arachis hypogaea HOM05D004502 ORTHO05D002623 6.9e-10 70.5 57 61.4
Hund14846 Selenicereus undatus HOM05D004502 ORTHO05D005579 7.6e-09 67.0 43 60.5
MELO3C034807.2 Cucumis melo HOM05D004502 ORTHO05D011879 2.1e-06 58.9 76 42.1
arahy.Tifrunner.gnm1.ann1.YV6W0W Arachis hypogaea HOM05D000064 ORTHO05D001480 3.5e-06 58.2 55 52.7
CBR_g17143 Chara braunii HOM05D004502 ORTHO05D005579 4.6e-06 57.8 169 28.4


User provided reference genes

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