Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g01565 Nelumbo nucifera HOM05D003837 ORTHO05D004751 1.6e-137 492.7 239 100.0
Duzib138G0194 Durio zibethinus HOM05D003837 ORTHO05D004751 5.5e-117 424.5 269 75.8
TAR629G3438 Trochodendron aralioides HOM05D003837 ORTHO05D004751 2.1e-116 422.5 269 77.3
Thecc.01G357600 Theobroma cacao HOM05D003837 ORTHO05D004751 3.6e-116 421.8 269 75.5
CiPaw.01G063000 Carya illinoinensis HOM05D003837 ORTHO05D004751 4.6e-116 421.4 269 75.1
Hma1.2p1_0780F.1_g216730 Hydrangea macrophylla HOM05D003837 ORTHO05D004751 4.6e-116 421.4 267 76.0
QL04p053649 Quercus lobata HOM05D003837 ORTHO05D004751 6.7e-115 417.5 268 75.4
Lj9A584G62 Lonicera japonica HOM05D003837 ORTHO05D004751 8.8e-115 417.2 268 75.4
Gorai.004G042000 Gossypium raimondii HOM05D003837 ORTHO05D004751 2.0e-114 416.0 269 74.3
Gohir.D08G043400 Gossypium hirsutum HOM05D003837 ORTHO05D004751 3.3e-114 415.2 269 74.3
CANSAT56G1308 Cannabis sativa HOM05D003837 ORTHO05D004751 5.7e-114 414.5 269 75.1
Gohir.A08G032500 Gossypium hirsutum HOM05D003837 ORTHO05D004751 9.7e-114 413.7 269 74.3
Dinv43830 Davidia involucrata HOM05D003837 ORTHO05D004751 1.7e-113 412.9 269 74.0
arahy.Tifrunner.gnm1.ann1.50MGD9 Arachis hypogaea HOM05D003837 ORTHO05D004751 2.8e-113 412.1 269 74.3
GSVIVG01026949001 Vitis vinifera HOM05D003837 ORTHO05D004751 2.8e-113 412.1 269 75.1
ECA236G1077 Erigeron canadensis HOM05D003837 ORTHO05D004751 4.8e-113 411.4 269 74.3
arahy.Tifrunner.gnm1.ann1.8FQY9T Arachis hypogaea HOM05D003837 ORTHO05D004751 1.1e-112 410.2 269 74.0
arahy.Tifrunner.gnm1.ann1.LGM3J9 Arachis hypogaea HOM05D003837 ORTHO05D004751 6.9e-112 407.5 269 73.2
Glyma.18G234200 Glycine max HOM05D003837 ORTHO05D004751 6.9e-112 407.5 269 72.9
MBI18_g02839_MAGBIO Magnolia biondii HOM05D003837 ORTHO05D004751 6.9e-112 407.5 269 74.7
Cc02_g38180 Coffea canephora HOM05D003837 ORTHO05D004751 9.1e-112 407.1 269 72.5
Eucgr.E01551 Eucalyptus grandis HOM05D003837 ORTHO05D004751 9.1e-112 407.1 269 72.9
Potri.014G086100 Populus trichocarpa HOM05D003837 ORTHO05D004751 2.0e-111 406.0 269 73.6
AUR62004375 Chenopodium quinoa HOM05D003837 ORTHO05D004751 2.6e-111 405.6 271 73.8
AUR62022582 Chenopodium quinoa HOM05D003837 ORTHO05D004751 4.5e-111 404.8 271 73.1
Lsat_1_v5_gn_7_4380 Lactuca sativa HOM05D003837 ORTHO05D004751 5.9e-111 404.4 266 73.7
arahy.Tifrunner.gnm1.ann1.MHF7VE Arachis hypogaea HOM05D003837 ORTHO05D004751 7.7e-111 404.1 269 72.9
PGR042G3540 Punica granatum HOM05D003837 ORTHO05D004751 7.7e-111 404.1 270 73.3
Ah.05g180500 Amaranthus hybridus HOM05D003837 ORTHO05D004751 1.0e-110 403.7 271 72.7
Nitab4.5_0000386g0040 Nicotiana tabacum HOM05D003837 ORTHO05D004751 1.7e-110 402.9 269 72.1
Nitab4.5_0002811g0010 Nicotiana tabacum HOM05D003837 ORTHO05D004751 1.7e-110 402.9 269 72.1
Atru.chr5.511 Acer truncatum HOM05D003837 ORTHO05D004751 2.2e-110 402.5 269 72.9
Phvul.008G061600 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 2.2e-110 402.5 269 72.1
vmacro21886 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 2.2e-110 402.5 269 72.1
vmacro23130 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 2.2e-110 402.5 269 72.1
Rhsim01G0163300 Rhododendron simsii HOM05D003837 ORTHO05D004751 2.9e-110 402.1 269 72.9
Haze_15524 Corylus avellana HOM05D003837 ORTHO05D004751 3.8e-110 401.7 306 66.7
Sp4g28060 Schrenkiella parvula HOM05D003837 ORTHO05D004751 8.5e-110 400.6 269 71.4
EL10Ac1g00400 Beta vulgaris HOM05D003837 ORTHO05D004751 1.4e-109 399.8 274 72.6
Sabra14G0062400 Salix brachista HOM05D003837 ORTHO05D004751 1.4e-109 399.8 269 72.5
Thhalv10001586m.g Eutrema salsugineum HOM05D003837 ORTHO05D004751 2.5e-109 399.1 269 70.3
MD01G1065200 Malus domestica HOM05D003837 ORTHO05D004751 2.5e-109 399.1 269 71.4
Solyc10g012410.3 Solanum lycopersicum HOM05D003837 ORTHO05D004751 4.2e-109 398.3 269 71.0
AL4G45220 Arabidopsis lyrata HOM05D003837 ORTHO05D004751 7.2e-109 397.5 269 71.0
Rhsim01G0190400 Rhododendron simsii HOM05D003837 ORTHO05D004751 7.2e-109 397.5 269 72.1
MELO3C021202.2 Cucumis melo HOM05D003837 ORTHO05D004751 9.4e-109 397.1 270 73.3
Oeu010619.1 Olea europaea HOM05D003837 ORTHO05D004751 9.4e-109 397.1 269 70.6
unitig_61.g26385 Utricularia gibba HOM05D003837 ORTHO05D004751 1.2e-108 396.7 268 71.3
Manes.01G255600 Manihot esculenta HOM05D003837 ORTHO05D004751 1.6e-108 396.4 263 71.9
MSTRG.17276 Avicennia marina HOM05D003837 ORTHO05D004751 2.1e-108 396.0 269 70.6
Medtr7g077870 Medicago truncatula HOM05D003837 ORTHO05D004751 2.1e-108 396.0 269 70.3
PGSC0003DMG400006508 Solanum tuberosum HOM05D003837 ORTHO05D004751 2.7e-108 395.6 269 70.3
Sopen10g006240 Solanum pennellii HOM05D003837 ORTHO05D004751 4.7e-108 394.8 269 70.3
AT2G45990 Arabidopsis thaliana HOM05D003837 ORTHO05D004751 6.1e-108 394.4 269 71.0
Carub.0004s2869 Capsella rubella HOM05D003837 ORTHO05D004751 6.1e-108 394.4 269 70.6
Psat3g107800 Pisum sativum HOM05D003837 ORTHO05D004751 7.9e-108 394.0 269 69.9
PSO017G1131 Papaver somniferum HOM05D003837 ORTHO05D004751 1.0e-107 393.7 269 70.3
Sed0000473 Sechium edule HOM05D003837 ORTHO05D004751 1.0e-107 393.7 269 71.7
CAN.G116.14 Capsicum annuum HOM05D003837 ORTHO05D004751 1.4e-107 393.3 269 71.4
Migut.B01769 Erythranthe guttata HOM05D003837 ORTHO05D004751 2.3e-107 392.5 269 70.3
Aa31LG1G27400 Aethionema arabicum HOM05D003837 ORTHO05D004751 3.9e-107 391.7 269 69.9
SalBow3G2595 Salvia bowleyana HOM05D003837 ORTHO05D004751 6.7e-107 391.0 270 71.5
Ca_07930_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 2.0e-106 389.4 281 67.3
CARHR141260 Cardamine hirsuta HOM05D003837 ORTHO05D004751 7.4e-106 387.5 269 69.1
RcHm_v2.0_Chr1g0356141 Rosa chinensis HOM05D003837 ORTHO05D004751 9.7e-106 387.1 269 69.5
Migut.B01768 Erythranthe guttata HOM05D003837 ORTHO05D004751 1.7e-105 386.3 271 68.3
CANSAT56G2444 Cannabis sativa HOM05D003837 ORTHO05D004751 2.2e-105 386.0 269 71.0
Lj1g0003798 Lotus japonicus HOM05D003837 ORTHO05D004751 2.2e-105 386.0 269 70.3
FAN10G2900 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.7e-105 385.2 269 68.8
Ciclev10021690m.g Citrus clementina HOM05D003837 ORTHO05D004751 1.4e-104 383.3 269 70.3
PSO063G2236 Papaver somniferum HOM05D003837 ORTHO05D004751 1.4e-104 383.3 265 69.8
FvH4_7g14620 Fragaria vesca HOM05D003837 ORTHO05D004751 1.8e-104 382.9 269 68.4
FAN06G1674 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.8e-104 382.9 269 68.4
arahy.Tifrunner.gnm1.ann1.AX1MHW Arachis hypogaea HOM05D003837 ORTHO05D004751 3.1e-104 382.1 269 69.9
BcaC02g12159 Brassica carinata HOM05D003837 ORTHO05D004751 3.1e-104 382.1 270 69.3
Lalb_Chr04g0253801 Lupinus albus HOM05D003837 ORTHO05D004751 5.3e-104 381.3 267 68.5
FAN01G2145 Fragaria x ananassa HOM05D003837 ORTHO05D004751 7.0e-104 380.9 269 68.0
BraA05t19561Z Brassica rapa HOM05D003837 ORTHO05D004751 9.1e-104 380.6 270 68.9
Ciclev10021689m.g Citrus clementina HOM05D003837 ORTHO05D004751 1.6e-103 379.8 269 68.8
A05p05980 Brassica napus HOM05D003837 ORTHO05D004751 2.0e-103 379.4 270 68.9
FAN10G2259 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.6e-103 379.0 275 67.3
FAN01G0904 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.9e-103 377.9 269 67.7
TPR.G37852 Trifolium pratense HOM05D003837 ORTHO05D004751 5.9e-103 377.9 269 67.7
C04p06910 Brassica napus HOM05D003837 ORTHO05D004751 1.0e-102 377.1 270 68.5
FAN03G2321 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.0e-102 377.1 275 66.9
VMungo1383G2611 Vigna mungo HOM05D003837 ORTHO05D004751 1.3e-102 376.7 268 68.7
FAN06G4414 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.7e-102 376.3 275 66.9
arahy.Tifrunner.gnm1.ann1.1HB2SZ Arachis hypogaea HOM05D003837 ORTHO05D004751 2.2e-102 375.9 269 66.2
Prupe.2G172200 Prunus persica HOM05D003837 ORTHO05D004751 3.8e-102 375.2 269 68.4
Glyma.18G234300 Glycine max HOM05D003837 ORTHO05D004751 5.0e-102 374.8 269 66.9
arahy.Tifrunner.gnm1.ann1.SJDP6S Arachis hypogaea HOM05D003837 ORTHO05D004751 8.5e-102 374.0 269 66.2
COL.COLO4_12726 Corchorus olitorius HOM05D003837 ORTHO05D004751 4.2e-101 371.7 246 74.8
Psat3g107760 Pisum sativum HOM05D003837 ORTHO05D004751 9.4e-101 370.5 269 66.2
TWI14G0320 Tripterygium wilfordii HOM05D003837 ORTHO05D004751 1.2e-100 370.2 269 68.0
Actinidia02836 Actinidia chinensis HOM05D003837 ORTHO05D004751 4.7e-100 368.2 275 68.4
Zm00001eb094870 Zea mays HOM05D003837 ORTHO05D004751 6.1e-100 367.9 268 65.7
THA.LOC104802037 Tarenaya hassleriana HOM05D003837 ORTHO05D004751 1.0e-99 367.1 269 67.7
BolC4t22312H Brassica oleracea HOM05D003837 ORTHO05D004751 1.4e-99 366.7 286 64.7
FvH4_7g14540 Fragaria vesca HOM05D003837 ORTHO05D004751 2.3e-99 365.9 269 66.9
Medtr7g077880 Medicago truncatula HOM05D003837 ORTHO05D004751 2.3e-99 365.9 269 64.7
Lalb_Chr10g0095951 Lupinus albus HOM05D003837 ORTHO05D004751 4.0e-99 365.2 267 65.9
Cfa003906 Carpinus fangiana HOM05D003837 ORTHO05D004751 5.2e-99 364.8 251 71.3
DCAR_025196 Daucus carota HOM05D003837 ORTHO05D004751 1.5e-98 363.2 269 65.8
Phvul.008G061500 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 4.4e-98 361.7 267 66.3
HPP92_025965 Vanilla planifolia HOM05D003837 ORTHO05D004751 4.4e-98 361.7 269 65.4
ClCG06G003610 Citrullus lanatus HOM05D003837 ORTHO05D004751 7.5e-98 360.9 269 67.7
Os07g0418000 Oryza sativa ssp. japonica HOM05D003837 ORTHO05D004751 7.5e-98 360.9 268 64.9
CDE05G2325 Ceratophyllum demersum HOM05D003837 ORTHO05D004751 9.7e-98 360.5 266 66.2
arahy.Tifrunner.gnm1.ann1.I86G4G Arachis hypogaea HOM05D003837 ORTHO05D004751 1.3e-97 360.1 244 72.5
TPR.G37767 Trifolium pratense HOM05D003837 ORTHO05D004751 2.8e-97 359.0 269 64.7
CsaV3_6G000640 Cucumis sativus L. HOM05D003837 ORTHO05D004751 4.8e-97 358.2 269 67.7
HanXRQChr04g0121181 Helianthus annuus HOM05D003837 ORTHO05D004751 4.8e-97 358.2 269 65.8
VMungo1383G0868 Vigna mungo HOM05D003837 ORTHO05D004751 6.3e-97 357.8 269 66.2
Ca_07931_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 8.2e-97 357.5 269 63.9
Cpa.g.sc11.20 Carica papaya HOM05D003837 ORTHO05D004751 4.1e-96 355.1 269 65.8
Peaxi162Scf00008g02421 Petunia axillaris HOM05D003837 ORTHO05D004751 1.6e-95 353.2 250 69.6
RcHm_v2.0_Chr1g0356101 Rosa chinensis HOM05D003837 ORTHO05D004751 3.8e-94 348.6 269 63.9
FAN06G3658 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.1e-93 347.1 269 63.9
SEGI_21942 Sequoiadendron giganteum HOM05D003837 ORTHO05D004751 1.5e-93 346.7 269 61.7
Hund27264 Selenicereus undatus HOM05D003837 ORTHO05D004751 5.5e-93 344.7 269 63.9
FAN06G0309 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.0e-91 338.6 269 62.5
HanXRQChr04g0121171 Helianthus annuus HOM05D003837 ORTHO05D004751 1.2e-90 337.0 269 61.0
FAN16G2327 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.5e-90 336.7 271 61.3
Pp3c11_2170 Physcomitrium patens HOM05D003837 ORTHO05D004751 4.4e-90 335.1 270 60.7
Ca_07932_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 7.5e-90 334.3 269 61.3
FvH4_3g44250 Fragaria vesca HOM05D003837 ORTHO05D004751 7.5e-90 334.3 271 60.9
FAN11G2601 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.8e-89 332.4 271 60.5
FAN01G2925 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.8e-89 331.6 276 59.8
FAN06G3536 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.8e-89 331.6 276 59.1
SMO118G0280 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 4.8e-89 331.6 267 60.3
FAN10G3579 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.3e-89 331.3 270 60.4
FAN10G0266 Fragaria x ananassa HOM05D003837 ORTHO05D004751 8.3e-89 330.9 270 60.4
ATR0680G377 Amborella trichopoda HOM05D003837 ORTHO05D004751 1.8e-88 329.7 235 68.5
FAN06G3952 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.2e-87 327.0 276 59.1
AagrBONN_evm.TU.Sc2ySwM_228.2910 Anthoceros agrestis HOM05D003837 ORTHO05D004751 2.0e-87 326.2 270 58.5
Pp3c23_10590 Physcomitrium patens HOM05D003837 ORTHO05D004751 1.3e-86 323.6 271 60.1
AagrBONN_evm.TU.Sc2ySwM_228.5133 Anthoceros agrestis HOM05D003837 ORTHO05D004751 6.5e-86 321.2 269 57.2
Mapoly0002s0196 Marchantia polymorpha HOM05D003837 ORTHO05D004751 1.5e-85 320.1 270 58.1
arahy.Tifrunner.gnm1.ann1.438NR4 Arachis hypogaea HOM05D003837 ORTHO05D004751 1.9e-85 319.7 272 61.8
Lj1g0022323 Lotus japonicus HOM05D003837 ORTHO05D004751 1.2e-84 317.0 236 66.5
RcHm_v2.0_Chr1g0356011 Rosa chinensis HOM05D003837 ORTHO05D004751 1.0e-83 313.9 270 56.7
RcHm_v2.0_Chr1g0356041 Rosa chinensis HOM05D003837 ORTHO05D004751 5.2e-83 311.6 270 56.3
RcHm_v2.0_Chr1g0355961 Rosa chinensis HOM05D003837 ORTHO05D004751 1.2e-82 310.5 271 57.9
RcHm_v2.0_Chr1g0356051 Rosa chinensis HOM05D003837 ORTHO05D004751 2.2e-81 306.2 271 57.2
Atru.chr5.512 Acer truncatum HOM05D003837 ORTHO05D004751 2.8e-81 305.8 230 65.7
Pp3c24_7060 Physcomitrium patens HOM05D003837 ORTHO05D004751 5.4e-80 301.6 249 59.0
Glyma.09G258500 Glycine max HOM05D003837 ORTHO05D004751 9.2e-80 300.8 196 74.0
CBR_g30756 Chara braunii HOM05D003837 ORTHO05D004751 1.0e-75 287.3 295 50.8
Actinidia02835 Actinidia chinensis HOM05D003837 ORTHO05D004751 2.2e-73 279.6 197 70.6
AUR62004376 Chenopodium quinoa HOM05D003837 ORTHO05D004751 2.4e-72 276.2 211 64.9
SMO118G0457 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 5.6e-69 265.0 265 50.6
Sc26g0000870 Simmondsia chinensis HOM05D003837 ORTHO05D004751 1.5e-66 256.9 187 66.3
FAN10G2608 Fragaria x ananassa HOM05D003837 ORTHO05D004751 8.3e-65 251.1 189 62.4
FvH4_7g14570 Fragaria vesca HOM05D003837 ORTHO05D004751 2.6e-58 229.6 143 77.6
vmacro20932 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 1.7e-57 226.9 181 64.6
Cre06.g278117 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 6.4e-49 198.4 259 40.9
RcHm_v2.0_Chr1g0356441 Rosa chinensis HOM05D003837 ORTHO05D004751 6.4e-49 198.4 188 58.0
SGA_v2.0_scaffold95G28830 Striga asiatica HOM05D003837 ORTHO05D004751 7.8e-47 191.4 239 46.0
MCO05G263 Micromonas commoda HOM05D003837 ORTHO05D004751 1.4e-43 180.6 255 38.8
CSS0003015 Camellia sinensis var. sinensis HOM05D003837 ORTHO05D004751 3.4e-42 176.0 188 47.3
FAN10G2382 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.8e-35 153.7 133 53.4
Glyma.09G258400 Glycine max HOM05D003837 ORTHO05D004751 5.3e-35 152.1 136 54.4
arahy.Tifrunner.gnm1.ann1.B43A3C Arachis hypogaea HOM05D003837 ORTHO05D004751 2.0e-34 150.2 129 62.0
Cre13.g578900 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 3.8e-33 146.0 269 35.3
Glyma.04G165300 Glycine max HOM05D003837 ORTHO05D004751 2.1e-31 140.2 109 66.1
MD09G1245300 Malus domestica HOM05D003837 ORTHO05D004751 4.0e-27 125.9 75 78.7
RcHm_v2.0_Chr1g0356021 Rosa chinensis HOM05D003837 ORTHO05D004751 1.7e-25 120.6 108 56.5
arahy.Tifrunner.gnm1.ann1.DBMD67 Arachis hypogaea HOM05D003837 ORTHO05D004751 1.9e-24 117.1 67 82.1
Actinidia37295 Actinidia chinensis HOM05D003837 ORTHO05D004751 4.6e-23 112.5 64 81.2
Ciclev10006592m.g Citrus clementina HOM05D003837 ORTHO05D033091 9.6e-21 104.8 67 67.2
MD09G1245400 Malus domestica HOM05D003837 ORTHO05D004751 3.7e-20 102.8 54 81.5
FvH4_7g14571 Fragaria vesca HOM05D003837 ORTHO05D004751 3.1e-19 99.8 54 75.9
Ciclev10013186m.g Citrus clementina HOM05D003837 ORTHO05D004751 1.4e-16 90.9 63 63.5
A05p05950 Brassica napus HOM05D003837 ORTHO05D033091 4.3e-13 79.3 49 75.5
BraA05t19558Z Brassica rapa HOM05D003837 ORTHO05D033091 4.3e-13 79.3 49 75.5
AUR62043290 Chenopodium quinoa HOM05D008055 ORTHO05D009927 3.1e-11 73.2 53 66.0
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 7.9e-07 58.5 45 51.1


User provided reference genes

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