Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g01563 Nelumbo nucifera HOM05D000277 ORTHO05D280502 5.3e-53 210.7 101 100.0
Sabra12G0108500 Salix brachista HOM05D000277 ORTHO05D006364 9.4e-10 67.0 179 30.2
TAR629G0521 Trochodendron aralioides HOM05D000277 ORTHO05D006364 2.1e-09 65.9 180 31.7
Dinv35233 Davidia involucrata HOM05D000277 ORTHO05D006364 3.6e-09 65.1 179 31.3
Potri.012G144500 Populus trichocarpa HOM05D000277 ORTHO05D006364 8.0e-09 63.9 179 29.6
Dinv28406 Davidia involucrata HOM05D000277 ORTHO05D006364 1.0e-08 63.5 183 30.6
CSS0050396 Camellia sinensis var. sinensis HOM05D000277 ORTHO05D006364 1.4e-08 63.2 183 29.5
Thecc.03G181700 Theobroma cacao HOM05D000277 ORTHO05D006364 1.8e-08 62.8 184 28.8
arahy.Tifrunner.gnm1.ann1.ZP9SCJ Arachis hypogaea HOM05D000277 ORTHO05D006364 2.3e-08 62.4 183 27.9
Duzib084G0807 Durio zibethinus HOM05D000277 ORTHO05D006364 2.3e-08 62.4 184 29.9
Eucgr.K00285 Eucalyptus grandis HOM05D000277 ORTHO05D006364 2.3e-08 62.4 179 29.1
Potri.015G147300 Populus trichocarpa HOM05D000277 ORTHO05D006364 2.3e-08 62.4 179 29.6
RcHm_v2.0_Chr1g0377941 Rosa chinensis HOM05D000277 ORTHO05D006364 3.0e-08 62.0 184 28.8
Glyma.16G180500 Glycine max HOM05D000277 ORTHO05D006364 4.0e-08 61.6 183 28.4
QL09p013385 Quercus lobata HOM05D000277 ORTHO05D006364 4.0e-08 61.6 180 28.3
arahy.Tifrunner.gnm1.ann1.75V8XQ Arachis hypogaea HOM05D000277 ORTHO05D006364 8.8e-08 60.5 179 27.9
FAN01G2949 Fragaria x ananassa HOM05D000277 ORTHO05D006364 8.8e-08 60.5 180 28.9
FAN03G3079 Fragaria x ananassa HOM05D000277 ORTHO05D006364 8.8e-08 60.5 180 28.9
Glyma.09G134600 Glycine max HOM05D000277 ORTHO05D006364 8.8e-08 60.5 183 27.9
MD07G1276500 Malus domestica HOM05D000277 ORTHO05D006364 8.8e-08 60.5 179 29.1
Nn6g33382 Nelumbo nucifera HOM05D000277 ORTHO05D006364 8.8e-08 60.5 30 83.3
FvH4_7g30000 Fragaria vesca HOM05D000277 ORTHO05D006364 1.1e-07 60.1 180 28.9
FAN03G3268 Fragaria x ananassa HOM05D000277 ORTHO05D006364 1.1e-07 60.1 180 28.9
FAN06G1079 Fragaria x ananassa HOM05D000277 ORTHO05D006364 1.1e-07 60.1 180 28.9
FAN10G4372 Fragaria x ananassa HOM05D000277 ORTHO05D006364 1.1e-07 60.1 180 28.9
Lalb_Chr01g0009461 Lupinus albus HOM05D000277 ORTHO05D006364 1.1e-07 60.1 179 27.4
PSO478G4681 Papaver somniferum HOM05D000277 ORTHO05D006364 1.1e-07 60.1 183 31.7
PSO782G2477 Papaver somniferum HOM05D000277 ORTHO05D006364 1.1e-07 60.1 183 31.7
TAR636G2327 Trochodendron aralioides HOM05D000277 ORTHO05D006364 1.1e-07 60.1 183 29.5
Ciclev10004977m.g Citrus clementina HOM05D000277 ORTHO05D006364 1.5e-07 59.7 179 27.9
Lj1A1002T28 Lonicera japonica HOM05D000277 ORTHO05D006364 1.5e-07 59.7 179 29.1
Phvul.004G111300 Phaseolus vulgaris HOM05D000277 ORTHO05D006364 1.5e-07 59.7 179 28.5
Prupe.2G298600 Prunus persica HOM05D000277 ORTHO05D006364 1.5e-07 59.7 179 28.5
Cc02_g02580 Coffea canephora HOM05D000277 ORTHO05D006364 2.0e-07 59.3 186 28.0
Gohir.A08G098500 Gossypium hirsutum HOM05D000277 ORTHO05D006364 2.0e-07 59.3 184 28.3
Gohir.D08G110100 Gossypium hirsutum HOM05D000277 ORTHO05D006364 2.0e-07 59.3 184 28.3
Ca_25402_v3 Cicer arietinum L. HOM05D000277 ORTHO05D006364 2.6e-07 58.9 180 26.7
Duzib205G1936 Durio zibethinus HOM05D000277 ORTHO05D006364 2.6e-07 58.9 185 28.1
FAN06G1372 Fragaria x ananassa HOM05D000277 ORTHO05D006364 2.6e-07 58.9 180 28.3
Sabra15G0156200 Salix brachista HOM05D000277 ORTHO05D006364 2.6e-07 58.9 179 28.5
Hma1.2p1_2038F.1_g312070 Hydrangea macrophylla HOM05D000277 ORTHO05D006364 4.4e-07 58.2 183 28.4
Peaxi162Scf00057g00227 Petunia axillaris HOM05D000277 ORTHO05D006364 4.4e-07 58.2 179 29.1
SalBow4G1904 Salvia bowleyana HOM05D000277 ORTHO05D006364 4.4e-07 58.2 30 76.7
Gohir.A09G042100 Gossypium hirsutum HOM05D000277 ORTHO05D006364 5.7e-07 57.8 180 27.8
PGSC0003DMG400010117 Solanum tuberosum HOM05D000277 ORTHO05D006364 5.7e-07 57.8 30 76.7
VMungo0464G0740 Vigna mungo HOM05D000277 ORTHO05D006364 5.7e-07 57.8 179 28.5
Aqoxy7G00277 Aquilegia oxysepala HOM05D000277 ORTHO05D006364 7.5e-07 57.4 183 28.4
Gorai.006G049700 Gossypium raimondii HOM05D000277 ORTHO05D006364 7.5e-07 57.4 180 27.8
Nitab4.5_0000084g0260 Nicotiana tabacum HOM05D000277 ORTHO05D006364 7.5e-07 57.4 179 27.9
Carub.0006s2167 Capsella rubella HOM05D000277 ORTHO05D006364 9.7e-07 57.0 30 70.0
Haze_00021 Corylus avellana HOM05D000277 ORTHO05D006364 9.7e-07 57.0 181 28.7
FAN10G3420 Fragaria x ananassa HOM05D000277 ORTHO05D006364 9.7e-07 57.0 180 28.3
Oeu016791.1 Olea europaea HOM05D000277 ORTHO05D006364 9.7e-07 57.0 181 28.2
unitig_46.g18798 Utricularia gibba HOM05D000277 ORTHO05D006364 9.7e-07 57.0 181 26.0
ClCG05G008240 Citrullus lanatus HOM05D000277 ORTHO05D006364 1.3e-06 56.6 180 27.2
Migut.F00318 Erythranthe guttata HOM05D000277 ORTHO05D006364 1.3e-06 56.6 30 73.3
Gohir.D11G010500 Gossypium hirsutum HOM05D000277 ORTHO05D006364 1.3e-06 56.6 184 27.2
Gorai.007G012000 Gossypium raimondii HOM05D000277 ORTHO05D006364 1.3e-06 56.6 184 27.2
CSS0043671 Camellia sinensis var. sinensis HOM05D000277 ORTHO05D006364 1.7e-06 56.2 187 27.8
MELO3C006929.2 Cucumis melo HOM05D000277 ORTHO05D006364 1.7e-06 56.2 30 70.0
CsaV3_3G017330 Cucumis sativus L. HOM05D000277 ORTHO05D006364 1.7e-06 56.2 30 70.0
Lalb_Chr03g0034761 Lupinus albus HOM05D000277 ORTHO05D006364 1.7e-06 56.2 30 70.0
Manes.06G151000 Manihot esculenta HOM05D000277 ORTHO05D006364 1.7e-06 56.2 179 27.4
AL6G35260 Arabidopsis lyrata HOM05D000277 ORTHO05D006364 2.2e-06 55.8 30 73.3
DCAR_020263 Daucus carota HOM05D000277 ORTHO05D006364 2.2e-06 55.8 36 61.1
Duzib068G0229 Durio zibethinus HOM05D000277 ORTHO05D006364 2.2e-06 55.8 182 28.0
Nitab4.5_0001625g0030 Nicotiana tabacum HOM05D000277 ORTHO05D006364 2.2e-06 55.8 179 27.9
BcaB07g29892 Brassica carinata HOM05D000277 ORTHO05D006364 2.8e-06 55.5 30 70.0
BcaC03g18013 Brassica carinata HOM05D000277 ORTHO05D006364 2.8e-06 55.5 30 70.0
BcaNung01198 Brassica carinata HOM05D000277 ORTHO05D006364 2.8e-06 55.5 30 70.0
BcaNung01833 Brassica carinata HOM05D000277 ORTHO05D006364 2.8e-06 55.5 30 70.0
A02p40820 Brassica napus HOM05D000277 ORTHO05D006364 2.8e-06 55.5 30 70.0
A06p34740 Brassica napus HOM05D000277 ORTHO05D006364 2.8e-06 55.5 30 70.0
C02p60720 Brassica napus HOM05D000277 ORTHO05D006364 2.8e-06 55.5 30 70.0
C07p43740 Brassica napus HOM05D000277 ORTHO05D006364 2.8e-06 55.5 30 70.0
BolC2t12123H Brassica oleracea HOM05D000277 ORTHO05D006364 2.8e-06 55.5 30 70.0
BraA02t09027Z Brassica rapa HOM05D000277 ORTHO05D006364 2.8e-06 55.5 30 70.0
CARHR189620 Cardamine hirsuta HOM05D000277 ORTHO05D006364 2.8e-06 55.5 30 70.0
Thhalv10004127m.g Eutrema salsugineum HOM05D000277 ORTHO05D006364 2.8e-06 55.5 30 70.0
HanXRQChr14g0462341 Helianthus annuus HOM05D000277 ORTHO05D006364 2.8e-06 55.5 179 26.3
Solyc03g025320.4 Solanum lycopersicum HOM05D000277 ORTHO05D006364 2.8e-06 55.5 30 73.3
Sopen03g004150 Solanum pennellii HOM05D000277 ORTHO05D006364 2.8e-06 55.5 30 73.3
Dinv01928 Davidia involucrata HOM05D000277 ORTHO05D006364 3.7e-06 55.1 30 70.0
SGA_v2.0_scaffold60G21085 Striga asiatica HOM05D000277 ORTHO05D006364 3.7e-06 55.1 30 70.0
THA.LOC104821386 Tarenaya hassleriana HOM05D000277 ORTHO05D006364 3.7e-06 55.1 30 73.3
CiPaw.05G263600 Carya illinoinensis HOM05D000277 ORTHO05D006364 4.8e-06 54.7 30 70.0
CDE05G0239 Ceratophyllum demersum HOM05D000277 ORTHO05D006364 4.8e-06 54.7 30 73.3
Gohir.A11G011400 Gossypium hirsutum HOM05D000277 ORTHO05D006364 4.8e-06 54.7 184 27.2
Lsat_1_v5_gn_2_132821 Lactuca sativa HOM05D000277 ORTHO05D006364 4.8e-06 54.7 179 27.4
Lj2g0019525 Lotus japonicus HOM05D000277 ORTHO05D006364 4.8e-06 54.7 179 27.4
Medtr6g045553 Medicago truncatula HOM05D000277 ORTHO05D006364 4.8e-06 54.7 179 26.3
Psat1g097080 Pisum sativum HOM05D000277 ORTHO05D006364 4.8e-06 54.7 179 27.4
Actinidia20874 Actinidia chinensis HOM05D000277 ORTHO05D006364 6.3e-06 54.3 183 27.9
Sp2g23330 Schrenkiella parvula HOM05D000277 ORTHO05D006364 6.3e-06 54.3 30 66.7
GSVIVG01028891001 Vitis vinifera HOM05D000277 ORTHO05D006364 6.3e-06 54.3 179 29.1
Atru.chr1.398 Acer truncatum HOM05D000277 ORTHO05D006364 8.2e-06 53.9 30 73.3
ATR0680G363 Amborella trichopoda HOM05D000277 ORTHO05D006364 8.2e-06 53.9 30 73.3
TPR.G5888 Trifolium pratense HOM05D000277 ORTHO05D006364 8.2e-06 53.9 30 66.7
GSVIVG01028889001 Vitis vinifera HOM05D000277 ORTHO05D006364 8.2e-06 53.9 179 28.5


User provided reference genes

Program Settings