Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g01526 Nelumbo nucifera HOM05D005411 ORTHO05D006463 1.1e-75 286.6 150 100.0
Ciclev10022634m.g Citrus clementina HOM05D005411 ORTHO05D006463 2.0e-40 169.5 141 64.5
RcHm_v2.0_Chr7g0197541 Rosa chinensis HOM05D005411 ORTHO05D006463 2.9e-39 165.6 146 61.6
TAR374G0701 Trochodendron aralioides HOM05D005411 ORTHO05D006463 8.4e-39 164.1 136 64.0
Manes.02G019300 Manihot esculenta HOM05D005411 ORTHO05D006463 1.9e-38 162.9 126 67.5
CiPaw.11G134900 Carya illinoinensis HOM05D005411 ORTHO05D006463 4.2e-38 161.8 139 61.9
MD06G1084200 Malus domestica HOM05D005411 ORTHO05D006463 7.1e-38 161.0 121 67.8
FvH4_5g02510 Fragaria vesca HOM05D005411 ORTHO05D006463 9.3e-38 160.6 109 74.3
Eucgr.H02261 Eucalyptus grandis HOM05D005411 ORTHO05D006463 2.1e-37 159.5 146 59.6
Potri.001G103800 Populus trichocarpa HOM05D005411 ORTHO05D006463 2.1e-37 159.5 145 61.4
QL12p032900 Quercus lobata HOM05D005411 ORTHO05D006463 2.1e-37 159.5 142 59.2
Sed0017646 Sechium edule HOM05D005411 ORTHO05D006463 2.1e-37 159.5 112 75.0
GSVIVG01019751001 Vitis vinifera HOM05D005411 ORTHO05D006463 2.7e-37 159.1 138 63.8
Gohir.A03G016600 Gossypium hirsutum HOM05D005411 ORTHO05D006463 3.5e-37 158.7 114 69.3
Eucgr.L02732 Eucalyptus grandis HOM05D005411 ORTHO05D006463 6.0e-37 157.9 146 58.9
CANSAT78G0141 Cannabis sativa HOM05D005411 ORTHO05D006463 7.9e-37 157.5 127 61.4
PSO782G3895 Papaver somniferum HOM05D005411 ORTHO05D006463 7.9e-37 157.5 145 60.0
Dinv38942 Davidia involucrata HOM05D005411 ORTHO05D006463 1.0e-36 157.1 158 58.2
Gorai.003G158500 Gossypium raimondii HOM05D005411 ORTHO05D006463 1.0e-36 157.1 146 59.6
PSO478G4730 Papaver somniferum HOM05D005411 ORTHO05D006463 1.0e-36 157.1 145 60.0
FAN13G2772 Fragaria x ananassa HOM05D005411 ORTHO05D006463 1.3e-36 156.8 124 66.1
Cc08_g14780 Coffea canephora HOM05D005411 ORTHO05D006463 2.3e-36 156.0 155 56.8
PGR042G1580 Punica granatum HOM05D005411 ORTHO05D006463 3.0e-36 155.6 140 60.7
Nitab4.5_0001615g0100 Nicotiana tabacum HOM05D005411 ORTHO05D006463 3.9e-36 155.2 109 73.4
Actinidia02004 Actinidia chinensis HOM05D005411 ORTHO05D006463 6.7e-36 154.5 108 71.3
Hma1.2p1_0377F.1_g139300 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 8.7e-36 154.1 139 60.4
Peaxi162Scf00119g00941 Petunia axillaris HOM05D005411 ORTHO05D006463 8.7e-36 154.1 125 64.8
Nitab4.5_0013184g0010 Nicotiana tabacum HOM05D005411 ORTHO05D006463 1.5e-35 153.3 109 70.6
Prupe.5G100600 Prunus persica HOM05D005411 ORTHO05D006463 1.9e-35 152.9 155 55.5
TWI60G1258 Tripterygium wilfordii HOM05D005411 ORTHO05D006463 2.5e-35 152.5 135 57.8
CSS0034062 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 3.3e-35 152.1 156 55.1
FAN04G3034 Fragaria x ananassa HOM05D005411 ORTHO05D006463 3.3e-35 152.1 128 63.3
Lalb_Chr09g0332851 Lupinus albus HOM05D005411 ORTHO05D006463 3.3e-35 152.1 109 71.6
MD14G1105400 Malus domestica HOM05D005411 ORTHO05D006463 3.3e-35 152.1 146 59.6
FAN08G0497 Fragaria x ananassa HOM05D005411 ORTHO05D006463 4.3e-35 151.8 124 64.5
Actinidia14564 Actinidia chinensis HOM05D005411 ORTHO05D006463 5.6e-35 151.4 108 70.4
Phvul.002G289800 Phaseolus vulgaris HOM05D005411 ORTHO05D006463 7.4e-35 151.0 123 63.4
Solyc08g081130.4 Solanum lycopersicum HOM05D005411 ORTHO05D006463 7.4e-35 151.0 121 64.5
Sopen08g029430 Solanum pennellii HOM05D005411 ORTHO05D006463 7.4e-35 151.0 121 64.5
PGSC0003DMG403012339 Solanum tuberosum HOM05D005411 ORTHO05D006463 7.4e-35 151.0 121 64.5
Cfa012226 Carpinus fangiana HOM05D005411 ORTHO05D006463 9.6e-35 150.6 109 66.1
MBI18_g42863_MAGBIO Magnolia biondii HOM05D005411 ORTHO05D006463 9.6e-35 150.6 143 59.4
Oeu011043.2 Olea europaea HOM05D005411 ORTHO05D006463 9.6e-35 150.6 155 56.8
ClCG07G008090 Citrullus lanatus HOM05D005411 ORTHO05D006463 1.3e-34 150.2 107 72.0
AT4G23330 Arabidopsis thaliana HOM05D005411 ORTHO05D006463 2.8e-34 149.1 119 65.5
CsaV3_4G005950 Cucumis sativus L. HOM05D005411 ORTHO05D006463 2.8e-34 149.1 109 70.6
Dinv38939 Davidia involucrata HOM05D005411 ORTHO05D006463 4.8e-34 148.3 158 55.1
ECA233G5385 Erigeron canadensis HOM05D005411 ORTHO05D006463 4.8e-34 148.3 109 67.9
Thhalv10026496m.g Eutrema salsugineum HOM05D005411 ORTHO05D006463 4.8e-34 148.3 146 57.5
CAN.G774.50 Capsicum annuum HOM05D005411 ORTHO05D006463 6.2e-34 147.9 124 60.5
Lsat_1_v5_gn_6_6580 Lactuca sativa HOM05D005411 ORTHO05D006463 6.2e-34 147.9 109 66.1
ATR0680G335 Amborella trichopoda HOM05D005411 ORTHO05D006463 1.1e-33 147.1 106 69.8
Migut.A00759 Erythranthe guttata HOM05D005411 ORTHO05D006463 1.4e-33 146.7 114 64.9
Aqoxy7G00317 Aquilegia oxysepala HOM05D005411 ORTHO05D006463 2.4e-33 146.0 90 77.8
AL7G30140 Arabidopsis lyrata HOM05D005411 ORTHO05D006463 2.4e-33 146.0 137 57.7
THA.LOC104814574 Tarenaya hassleriana HOM05D005411 ORTHO05D006463 3.1e-33 145.6 109 67.9
FAN18G0348 Fragaria x ananassa HOM05D005411 ORTHO05D006463 4.0e-33 145.2 91 76.9
A01p14570 Brassica napus HOM05D005411 ORTHO05D006463 5.3e-33 144.8 153 54.9
BraA01t01399Z Brassica rapa HOM05D005411 ORTHO05D006463 5.3e-33 144.8 153 54.9
Carub.0007s1784 Capsella rubella HOM05D005411 ORTHO05D006463 5.3e-33 144.8 126 62.7
BcaC09g51012 Brassica carinata HOM05D005411 ORTHO05D006463 6.9e-33 144.4 153 54.9
BolC1t01733H Brassica oleracea HOM05D005411 ORTHO05D006463 6.9e-33 144.4 153 54.9
Psat7g033000 Pisum sativum HOM05D005411 ORTHO05D006463 9.0e-33 144.1 108 66.7
Medtr8g098255 Medicago truncatula HOM05D005411 ORTHO05D006463 1.2e-32 143.7 108 66.7
CiPaw.12G092800 Carya illinoinensis HOM05D005411 ORTHO05D006463 2.0e-32 142.9 114 63.2
Thecc.03G279100 Theobroma cacao HOM05D005411 ORTHO05D006463 2.6e-32 142.5 96 70.8
vmacro11335 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 2.6e-32 142.5 126 59.5
vmacro22820 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 2.6e-32 142.5 126 59.5
Sabra01G0078400 Salix brachista HOM05D005411 ORTHO05D006463 4.5e-32 141.7 132 60.6
BcaNung01456 Brassica carinata HOM05D005411 ORTHO05D006463 5.8e-32 141.4 114 64.9
C07p52580 Brassica napus HOM05D000022 ORTHO05D000071 5.8e-32 141.4 114 64.9
BolC7t45755H Brassica oleracea HOM05D005411 ORTHO05D006463 5.8e-32 141.4 114 64.9
Ca_17530_v3 Cicer arietinum L. HOM05D005411 ORTHO05D006463 5.8e-32 141.4 107 67.3
TPR.G12871 Trifolium pratense HOM05D005411 ORTHO05D006463 5.8e-32 141.4 130 58.5
HanXRQChr13g0394241 Helianthus annuus HOM05D005411 ORTHO05D006463 7.6e-32 141.0 162 50.6
BraA03t14482Z Brassica rapa HOM05D000022 ORTHO05D000071 9.9e-32 140.6 109 65.1
SalBow4G3209 Salvia bowleyana HOM05D005411 ORTHO05D006463 9.9e-32 140.6 113 63.7
CARHR230670 Cardamine hirsuta HOM05D005411 ORTHO05D006463 6.4e-31 137.9 147 54.4
MELO3C016353.2 Cucumis melo HOM05D005411 ORTHO05D006463 6.4e-31 137.9 91 74.7
BcaNung03266 Brassica carinata HOM05D005411 ORTHO05D006463 1.4e-30 136.7 108 63.9
A03p54210 Brassica napus HOM05D005411 ORTHO05D006463 1.4e-30 136.7 107 64.5
AUR62022799 Chenopodium quinoa HOM05D005411 ORTHO05D006463 1.4e-30 136.7 108 61.1
Lj4g0004308 Lotus japonicus HOM05D005411 ORTHO05D006463 1.4e-30 136.7 153 53.6
vmacro13959 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 1.9e-30 136.3 163 49.7
arahy.Tifrunner.gnm1.ann1.FJ1DNZ Arachis hypogaea HOM05D005411 ORTHO05D006463 5.5e-30 134.8 121 61.2
arahy.Tifrunner.gnm1.ann1.P2DUDW Arachis hypogaea HOM05D005411 ORTHO05D006463 5.5e-30 134.8 121 61.2
Rhsim07G0090400 Rhododendron simsii HOM05D005411 ORTHO05D006463 7.1e-30 134.4 91 70.3
BcaC03g18356 Brassica carinata HOM05D005411 ORTHO05D006463 9.3e-30 134.0 116 60.3
C02p64340 Brassica napus HOM05D005411 ORTHO05D006463 9.3e-30 134.0 116 60.3
MSTRG.25610 Avicennia marina HOM05D005411 ORTHO05D006463 1.2e-29 133.7 107 60.7
Glyma.05G208200 Glycine max HOM05D005411 ORTHO05D006463 2.1e-29 132.9 90 71.1
Aa31LG9G10800 Aethionema arabicum HOM05D005411 ORTHO05D006463 2.7e-29 132.5 125 58.4
CDE11G0686 Ceratophyllum demersum HOM05D003133 ORTHO05D006463 3.5e-29 132.1 93 69.9
Hund16039 Selenicereus undatus HOM05D005411 ORTHO05D006463 7.9e-29 131.0 106 62.3
SGA_v2.0_scaffold173G39183 Striga asiatica HOM05D005411 ORTHO05D006463 7.9e-29 131.0 106 62.3
unitig_46.g18551 Utricularia gibba HOM05D005411 ORTHO05D006463 1.8e-28 129.8 113 60.2
VMungo0251G3187 Vigna mungo HOM05D005411 ORTHO05D006463 1.8e-28 129.8 114 57.9
Lj8E221T1 Lonicera japonica HOM05D005411 ORTHO05D006463 1.1e-27 127.1 99 63.6
Os07g0483400 Oryza sativa ssp. japonica HOM05D005411 ORTHO05D006463 2.5e-27 125.9 105 60.0
SEGI_09083 Sequoiadendron giganteum HOM05D005411 ORTHO05D006463 7.4e-27 124.4 103 62.1
AUR62012163 Chenopodium quinoa HOM05D005411 ORTHO05D006463 3.1e-25 119.0 147 45.6
Gohir.D03G151300 Gossypium hirsutum HOM05D005411 ORTHO05D006463 9.0e-25 117.5 113 57.5
Zm00001eb104990 Zea mays HOM05D005411 ORTHO05D006463 2.6e-24 115.9 83 66.3
EL10Ac2g04672 Beta vulgaris HOM05D005411 ORTHO05D006463 2.2e-23 112.8 92 62.0
CDE09G0994 Ceratophyllum demersum HOM05D005411 ORTHO05D006463 2.5e-22 109.4 120 51.7
Sc01g0009600 Simmondsia chinensis HOM05D005411 ORTHO05D006463 3.2e-22 109.0 94 56.4
C01p18020 Brassica napus HOM05D005411 ORTHO05D006463 4.2e-22 108.6 120 53.3
Duzib205G1808 Durio zibethinus HOM05D005411 ORTHO05D006463 7.1e-22 107.8 89 62.9
BcaNung00981 Brassica carinata HOM05D005411 ORTHO05D006463 1.3e-20 103.6 143 45.5
BolC5t34770H Brassica oleracea HOM05D005411 ORTHO05D006463 3.9e-20 102.1 90 58.9
Pp3c11_2200 Physcomitrium patens HOM05D005411 ORTHO05D006463 3.3e-19 99.0 111 45.9
Mapoly0008s0209 Marchantia polymorpha HOM05D005411 ORTHO05D006463 4.8e-18 95.1 103 45.6
Atru.chr9.2185 Acer truncatum HOM05D005411 ORTHO05D006463 8.2e-18 94.4 90 56.7
AagrBONN_evm.TU.Sc2ySwM_369.479 Anthoceros agrestis HOM05D005411 ORTHO05D006463 1.8e-17 93.2 84 53.6
Duzib084G0828 Durio zibethinus HOM05D005411 ORTHO05D006463 3.1e-17 92.4 71 63.4
Potri.003G127900 Populus trichocarpa HOM05D005411 ORTHO05D006463 3.1e-17 92.4 138 42.0
BcaNung00977 Brassica carinata HOM05D005411 ORTHO05D006463 9.0e-17 90.9 64 67.2
Oeu047371.1 Olea europaea HOM05D005411 ORTHO05D006463 2.6e-16 89.4 70 64.3
CSS0044618 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 7.6e-16 87.8 58 70.7
Hma1.2p1_0377F.1_g139290 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 1.1e-14 84.0 88 53.4
SHI07138 Sapria himalayana HOM05D005411 ORTHO05D006463 1.9e-14 83.2 66 62.1
BcaC01g04135 Brassica carinata HOM05D005411 ORTHO05D006463 2.3e-12 76.3 56 62.5
HPP92_001497 Vanilla planifolia HOM05D005411 ORTHO05D006463 3.0e-12 75.9 46 78.3
Sabra17G0003100 Salix brachista HOM05D005411 ORTHO05D006463 7.4e-11 71.2 89 49.4
Sabra17G0003800 Salix brachista HOM05D005411 ORTHO05D006463 7.4e-11 71.2 89 49.4
SMO329G0027 Selaginella moellendorffii HOM05D005411 ORTHO05D006463 2.2e-10 69.7 72 45.8
SMO358G0504 Selaginella moellendorffii HOM05D005411 ORTHO05D006463 2.2e-10 69.7 72 45.8
Sabra18G0123000 Salix brachista HOM05D005411 ORTHO05D006463 2.8e-10 69.3 89 48.3
Sabra14G0123800 Salix brachista HOM05D005411 ORTHO05D006463 1.1e-09 67.4 89 47.2
C03p44770 Brassica napus HOM05D005411 ORTHO05D006463 2.4e-09 66.2 60 55.0
BcaB05g22557 Brassica carinata HOM05D002513 ORTHO05D002720 9.1e-09 64.3 82 48.8
BolC3t16740H Brassica oleracea HOM05D005411 ORTHO05D006463 1.5e-08 63.5 60 55.0
Sabra17G0034500 Salix brachista HOM05D005411 ORTHO05D006463 1.7e-07 60.1 118 41.5
Eucgr.H02258 Eucalyptus grandis HOM05D005411 ORTHO05D006463 2.5e-06 56.2 74 45.9
COL.COLO4_34468 Corchorus olitorius HOM05D005411 ORTHO05D006463 5.5e-06 55.1 67 49.3
BcaC08g44430 Brassica carinata HOM05D000522 ORTHO05D021960 9.4e-06 54.3 58 46.6


User provided reference genes

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