Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g01506 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.7e-108 396.0 199 100.0
Nn1g03388 Nelumbo nucifera HOM05D004496 ORTHO05D005513 2.1e-69 266.2 159 86.2
Nn2g15240 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.8e-65 253.1 175 77.1
Nn1g06547 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.4e-62 243.4 203 68.5
Nn1g07279 Nelumbo nucifera HOM05D004496 ORTHO05D005513 4.5e-48 195.3 153 69.3
Nn3g21624 Nelumbo nucifera HOM05D004496 ORTHO05D005513 7.7e-48 194.5 174 65.5
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 1.0e-47 194.1 153 66.0
TAR624G0763 Trochodendron aralioides HOM05D001218 ORTHO05D003142 6.5e-47 191.4 144 70.1
Dinv13941 Davidia involucrata HOM05D004496 ORTHO05D005513 1.9e-46 189.9 148 67.6
TAR627G0164 Trochodendron aralioides HOM05D004496 ORTHO05D005513 5.7e-43 178.3 145 65.5
TAR627G0966 Trochodendron aralioides HOM05D004496 ORTHO05D005513 5.7e-43 178.3 145 65.5
PGSC0003DMG400016725 Solanum tuberosum HOM05D004496 ORTHO05D005513 5.0e-39 165.2 208 49.5
Solyc02g081150.1 Solanum lycopersicum HOM05D004496 ORTHO05D005513 1.1e-38 164.1 204 50.0
CAN.G1014.49 Capsicum annuum HOM05D004496 ORTHO05D005513 1.9e-38 163.3 187 54.0
Lj2P264T22 Lonicera japonica HOM05D004496 ORTHO05D005513 5.5e-38 161.8 189 52.9
Sopen02g025790 Solanum pennellii HOM05D004496 ORTHO05D005513 9.4e-38 161.0 204 47.5
Nitab4.5_0009517g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.2e-37 160.6 172 57.0
Nitab4.5_0006125g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 2.7e-37 159.5 178 56.2
Sed0021394 Sechium edule HOM05D004496 ORTHO05D005513 4.7e-37 158.7 188 51.1
Ca_00696_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 3.0e-36 156.0 169 53.3
Migut.M01368 Erythranthe guttata HOM05D004496 ORTHO05D005513 6.8e-36 154.8 164 56.7
FAN25G1366 Fragaria x ananassa HOM05D004496 ORTHO05D005513 6.8e-36 154.8 174 53.4
MD10G1327300 Malus domestica HOM05D004496 ORTHO05D005513 1.5e-35 153.7 158 58.2
Medtr2g024980 Medicago truncatula HOM05D004496 ORTHO05D005513 1.5e-35 153.7 137 59.9
Thecc.06G228600 Theobroma cacao HOM05D004496 ORTHO05D005513 3.4e-35 152.5 158 57.0
Duzib235G0420 Durio zibethinus HOM05D004496 ORTHO05D005513 1.7e-34 150.2 138 59.4
Hma1.2p1_0298F.1_g117440 Hydrangea macrophylla HOM05D004496 ORTHO05D005513 1.7e-34 150.2 138 60.1
CsaV3_6G048690 Cucumis sativus L. HOM05D004496 ORTHO05D005513 2.8e-34 149.4 153 54.9
Ciclev10015792m.g Citrus clementina HOM05D004496 ORTHO05D005513 4.8e-34 148.7 189 48.7
Phvul.006G145400 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 4.8e-34 148.7 144 59.0
RcHm_v2.0_Chr5g0001991 Rosa chinensis HOM05D004496 ORTHO05D005513 6.3e-34 148.3 158 55.7
CANSAT56G2524 Cannabis sativa HOM05D004496 ORTHO05D005513 8.3e-34 147.9 151 55.0
FvH4_3g01370 Fragaria vesca HOM05D004496 ORTHO05D005513 8.3e-34 147.9 188 50.0
CiPaw.09G098400 Carya illinoinensis HOM05D004496 ORTHO05D005513 1.8e-33 146.7 142 56.3
Phvul.003G081900 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 4.1e-33 145.6 161 52.2
ClCG01G021640 Citrullus lanatus HOM05D004496 ORTHO05D005513 5.4e-33 145.2 139 57.6
CSS0046352 Camellia sinensis var. sinensis HOM05D004496 ORTHO05D005513 7.0e-33 144.8 159 54.1
Glyma.15G112200 Glycine max HOM05D004496 ORTHO05D005513 7.0e-33 144.8 140 57.9
CiPaw.10G074800 Carya illinoinensis HOM05D004496 ORTHO05D005513 9.1e-33 144.4 175 49.1
Duzib192G0344 Durio zibethinus HOM05D004496 ORTHO05D005513 1.2e-32 144.1 172 51.2
Psat1g175480 Pisum sativum HOM05D004496 ORTHO05D005513 1.2e-32 144.1 139 55.4
MSTRG.7183 Avicennia marina HOM05D004496 ORTHO05D005513 3.5e-32 142.5 171 50.9
Actinidia26886 Actinidia chinensis HOM05D004496 ORTHO05D005513 1.3e-31 140.6 136 59.6
MELO3C007420.2 Cucumis melo HOM05D004496 ORTHO05D005513 1.3e-31 140.6 152 53.3
PGR042G2934 Punica granatum HOM05D004496 ORTHO05D005513 2.2e-31 139.8 153 54.9
Gohir.D05G176300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 2.9e-31 139.4 139 59.0
Lalb_Chr15g0087811 Lupinus albus HOM05D004496 ORTHO05D005513 2.9e-31 139.4 138 55.8
Lj6g0013804 Lotus japonicus HOM05D004496 ORTHO05D005513 6.5e-31 138.3 159 52.8
Actinidia02342 Actinidia chinensis HOM05D004496 ORTHO05D005513 8.5e-31 137.9 149 55.0
Glyma.09G007852 Glycine max HOM05D004496 ORTHO05D005513 1.5e-30 137.1 136 56.6
Prupe.4G014700 Prunus persica HOM05D004496 ORTHO05D005513 2.5e-30 136.3 154 54.5
Lalb_Chr18g0056781 Lupinus albus HOM05D004496 ORTHO05D005513 1.2e-29 134.0 148 54.1
Aqoxy1G03511 Aquilegia oxysepala HOM05D004496 ORTHO05D005513 1.6e-29 133.7 177 48.0
SalBow8G1688 Salvia bowleyana HOM05D004496 ORTHO05D005513 1.6e-29 133.7 155 51.0
GSVIVG01004818001 Vitis vinifera HOM05D004496 ORTHO05D005513 1.6e-29 133.7 99 69.7
MSTRG.13128 Avicennia marina HOM05D004496 ORTHO05D005513 2.1e-29 133.3 190 45.8
THA.LOC104812981 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 2.1e-29 133.3 177 48.6
COL.COLO4_31834 Corchorus olitorius HOM05D004496 ORTHO05D005513 2.8e-29 132.9 153 54.2
Carub.0007s1912 Capsella rubella HOM05D004496 ORTHO05D005513 3.6e-29 132.5 140 53.6
PSO210G3984 Papaver somniferum HOM05D004496 ORTHO05D005513 6.1e-29 131.7 184 51.1
Sp7g20330 Schrenkiella parvula HOM05D004496 ORTHO05D005513 8.0e-29 131.3 142 53.5
TAR626G0621 Trochodendron aralioides HOM05D004496 ORTHO05D005513 8.0e-29 131.3 139 57.6
Sabra11G0010200 Salix brachista HOM05D004496 ORTHO05D005513 1.0e-28 131.0 144 54.9
BcaNung03755 Brassica carinata HOM05D004496 ORTHO05D005513 3.0e-28 129.4 138 51.4
Sabra11G0008600 Salix brachista HOM05D004496 ORTHO05D005513 3.0e-28 129.4 144 54.9
TWI38G0464 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 3.0e-28 129.4 182 47.8
VMungo1215G0904 Vigna mungo HOM05D004496 ORTHO05D005513 3.0e-28 129.4 157 51.0
PSO832G0430 Papaver somniferum HOM05D004496 ORTHO05D005513 1.2e-27 127.5 185 49.7
Aa31LG6G4310 Aethionema arabicum HOM05D004496 ORTHO05D005513 1.5e-27 127.1 144 54.2
Gohir.A05G173300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.5e-27 127.1 145 51.0
Thhalv10025698m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 2.0e-27 126.7 148 51.4
Gorai.009G181700 Gossypium raimondii HOM05D004496 ORTHO05D005513 2.0e-27 126.7 158 53.2
Potri.011G015500 Populus trichocarpa HOM05D004496 ORTHO05D005513 2.0e-27 126.7 158 50.0
Cpa.g.sc3209.1 Carica papaya HOM05D004496 ORTHO05D005513 2.6e-27 126.3 130 53.8
Peaxi162Scf00708g00013 Petunia axillaris HOM05D004496 ORTHO05D005513 2.6e-27 126.3 166 48.8
Haze_06861 Corylus avellana HOM05D004496 ORTHO05D005513 3.4e-27 125.9 134 53.0
MD05G1352700 Malus domestica HOM05D004496 ORTHO05D005513 4.4e-27 125.6 163 50.9
BcaC09g51153 Brassica carinata HOM05D004496 ORTHO05D005513 7.5e-27 124.8 134 50.7
A01p13560 Brassica napus HOM05D004496 ORTHO05D005513 7.5e-27 124.8 134 50.7
C01p16430 Brassica napus HOM05D004496 ORTHO05D005513 7.5e-27 124.8 134 50.7
BolC1t01593H Brassica oleracea HOM05D004496 ORTHO05D005513 7.5e-27 124.8 134 50.7
BraA01t01298Z Brassica rapa HOM05D004496 ORTHO05D005513 7.5e-27 124.8 134 50.7
Cfa000158 Carpinus fangiana HOM05D004496 ORTHO05D005513 1.3e-26 124.0 132 53.0
Thhalv10028862m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 1.3e-26 124.0 176 46.0
Sc17g0007590 Simmondsia chinensis HOM05D004496 ORTHO05D005513 1.3e-26 124.0 179 45.3
Potri.006G270100 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.7e-26 123.6 187 46.0
CARHR229080 Cardamine hirsuta HOM05D004496 ORTHO05D005513 2.8e-26 122.9 140 52.1
MBI19_g19808_MAGBIO Magnolia biondii HOM05D004496 ORTHO05D005513 4.9e-26 122.1 117 55.6
Sed0016463 Sechium edule HOM05D004496 ORTHO05D005513 4.9e-26 122.1 138 51.4
AL7G31460 Arabidopsis lyrata HOM05D004496 ORTHO05D005513 8.3e-26 121.3 135 53.3
THA.LOC104806318 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 8.3e-26 121.3 143 50.3
Atru.chr10.2286 Acer truncatum HOM05D004496 ORTHO05D005513 1.1e-25 120.9 151 47.7
Migut.H01591 Erythranthe guttata HOM05D004496 ORTHO05D005513 1.1e-25 120.9 144 50.7
BcaNung03756 Brassica carinata HOM05D004496 ORTHO05D005513 1.4e-25 120.6 138 51.4
A03p53360 Brassica napus HOM05D004496 ORTHO05D005513 1.4e-25 120.6 139 49.6
Nitab4.5_0000005g0040 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.4e-25 120.6 153 52.3
Nitab4.5_0005882g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.4e-25 120.6 208 44.7
Rhsim13G0149900 Rhododendron simsii HOM05D004496 ORTHO05D005513 2.4e-25 119.8 149 49.7
arahy.Tifrunner.gnm1.ann1.EH65IB Arachis hypogaea HOM05D004496 ORTHO05D005513 5.4e-25 118.6 158 46.8
arahy.Tifrunner.gnm1.ann1.SI7QTZ Arachis hypogaea HOM05D004496 ORTHO05D005513 5.4e-25 118.6 158 46.8
Psat4g004280 Pisum sativum HOM05D004496 ORTHO05D005513 7.0e-25 118.2 149 49.7
vmacro03662 Vaccinium macrocarpon HOM05D004496 ORTHO05D005513 1.2e-24 117.5 187 44.4
Lsat_1_v5_gn_7_14880 Lactuca sativa HOM05D004496 ORTHO05D005513 3.5e-24 115.9 162 44.4
BcaNung00807 Brassica carinata HOM05D004496 ORTHO05D005513 5.9e-24 115.2 134 49.3
BcaNung01704 Brassica carinata HOM05D004496 ORTHO05D005513 7.8e-24 114.8 133 51.1
Gorai.010G184200 Gossypium raimondii HOM05D004496 ORTHO05D005513 1.7e-23 113.6 140 46.4
C07p51660 Brassica napus HOM05D004496 ORTHO05D005513 2.3e-23 113.2 134 48.5
CDE07G1551 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 2.3e-23 113.2 172 42.4
Gohir.D06G157600 Gossypium hirsutum HOM05D004496 ORTHO05D005513 2.9e-23 112.8 140 48.6
Manes.16G002700 Manihot esculenta HOM05D004496 ORTHO05D005513 6.6e-23 111.7 139 49.6
THA.LOC104813445 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 6.6e-23 111.7 139 48.9
Sabra11G0011700 Salix brachista HOM05D004496 ORTHO05D005513 1.1e-22 110.9 144 49.3
Peaxi162Scf00294g00097 Petunia axillaris HOM05D004496 ORTHO05D005513 1.5e-22 110.5 174 44.3
TWI38G0680 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 1.5e-22 110.5 179 43.6
ECA236G1118 Erigeron canadensis HOM05D004496 ORTHO05D005513 3.3e-22 109.4 154 43.5
Lj1P1236T60 Lonicera japonica HOM05D004496 ORTHO05D005513 3.3e-22 109.4 157 47.1
Glyma.07G263700 Glycine max HOM05D004496 ORTHO05D005513 5.6e-22 108.6 160 45.6
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 9.5e-22 107.8 95 61.1
Potri.004G003900 Populus trichocarpa HOM05D004496 ORTHO05D005513 9.5e-22 107.8 189 43.9
EL10Ac8g20132 Beta vulgaris HOM05D004496 ORTHO05D005513 1.2e-21 107.5 161 44.7
QL05p071740 Quercus lobata HOM05D004496 ORTHO05D005513 1.2e-21 107.5 133 45.1
Lsat_1_v5_gn_4_61701 Lactuca sativa HOM05D004496 ORTHO05D005513 1.6e-21 107.1 178 42.7
Oeu007154.1 Olea europaea HOM05D004496 ORTHO05D005513 1.6e-21 107.1 144 50.0
CDE04G1983 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 2.8e-21 106.3 172 41.3
Eucgr.D01366 Eucalyptus grandis HOM05D004496 ORTHO05D005513 4.7e-21 105.5 163 44.8
DCAR_002205 Daucus carota HOM05D004496 ORTHO05D005513 1.0e-20 104.4 189 40.2
Sabra04G0002100 Salix brachista HOM05D004496 ORTHO05D005513 1.2e-19 100.9 174 43.7
AT4G22190 Arabidopsis thaliana HOM05D004496 ORTHO05D005513 2.6e-19 99.8 140 45.7
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 3.4e-19 99.4 131 45.8
Sp6g04650 Schrenkiella parvula HOM05D004496 ORTHO05D005513 1.7e-18 97.1 156 44.2
Lj4g0028181 Lotus japonicus HOM05D004496 ORTHO05D005513 3.7e-18 95.9 144 43.1
BraA03t14400Z Brassica rapa HOM05D004496 ORTHO05D005513 6.4e-18 95.1 107 51.4
HanXRQChr15g0470781 Helianthus annuus HOM05D004496 ORTHO05D005513 1.8e-17 93.6 132 43.2
PGR004G2243 Punica granatum HOM05D004496 ORTHO05D005513 5.4e-17 92.0 151 41.7
Manes.17G027100 Manihot esculenta HOM05D004496 ORTHO05D005513 7.0e-17 91.7 155 40.6
SGA_v2.0_scaffold89G27486 Striga asiatica HOM05D004496 ORTHO05D005513 7.0e-17 91.7 150 43.3
HPP92_023384 Vanilla planifolia HOM05D004496 ORTHO05D005513 1.7e-15 87.0 184 40.2
TWI63G1509 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 6.6e-15 85.1 138 42.0
Medtr4g132690 Medicago truncatula HOM05D004496 ORTHO05D005513 1.1e-14 84.3 146 39.7
Potri.006G282500 Populus trichocarpa HOM05D004496 ORTHO05D005513 3.3e-14 82.8 180 38.9
Potri.006G283300 Populus trichocarpa HOM05D004496 ORTHO05D005513 4.7e-13 79.0 144 39.6
HPP92_008063 Vanilla planifolia HOM05D004496 ORTHO05D005513 1.4e-12 77.4 188 36.2
Gohir.A06G151400 Gossypium hirsutum HOM05D004496 ORTHO05D005513 2.3e-12 76.6 72 61.1
Potri.006G282000 Populus trichocarpa HOM05D004496 ORTHO05D005513 4.0e-12 75.9 162 37.7
Oeu003154.1 Olea europaea HOM05D004496 ORTHO05D005513 5.2e-12 75.5 138 39.9
Ca_21060_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 7.5e-11 71.6 106 43.4
SGA_v2.0_scaffold4G01894 Striga asiatica HOM05D004496 ORTHO05D005513 8.3e-10 68.2 89 48.3
unitig_749.g13622 Utricularia gibba HOM05D004496 ORTHO05D005513 1.9e-09 67.0 113 41.6
ATR0059G030 Amborella trichopoda HOM05D004496 ORTHO05D005513 2.4e-09 66.6 171 33.9
Zm00001eb169380 Zea mays HOM05D004496 ORTHO05D005513 2.4e-09 66.6 130 43.1
unitig_26.g9398 Utricularia gibba HOM05D004496 ORTHO05D005513 2.7e-08 63.2 156 33.3
TPR.G37047 Trifolium pratense HOM05D004496 ORTHO05D005513 3.5e-08 62.8 63 50.8
Os11g0497350 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 7.8e-08 61.6 147 34.7
Zm00001eb112850 Zea mays HOM05D004496 ORTHO05D005513 1.0e-07 61.2 134 37.3
unitig_748.g7579 Utricularia gibba HOM05D004496 ORTHO05D005513 8.6e-07 58.2 96 43.8


User provided reference genes

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