Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g01504 Nelumbo nucifera HOM05D007705 ORTHO05D009720 1.3e-35 152.5 79 100.0
Atru.chr5.465 Acer truncatum HOM05D007705 ORTHO05D009720 1.5e-23 112.5 79 70.9
Rhsim07G0016500 Rhododendron simsii HOM05D007705 ORTHO05D009720 1.3e-22 109.4 82 69.5
Aqoxy2G01039 Aquilegia oxysepala HOM05D007705 ORTHO05D009720 2.2e-22 108.6 79 68.4
FvH4_7g14160 Fragaria vesca HOM05D007705 ORTHO05D009720 3.8e-22 107.8 79 70.9
FAN03G0317 Fragaria x ananassa HOM05D007705 ORTHO05D009720 3.8e-22 107.8 79 70.9
FAN06G1915 Fragaria x ananassa HOM05D007705 ORTHO05D009720 3.8e-22 107.8 79 70.9
FAN10G2029 Fragaria x ananassa HOM05D007705 ORTHO05D009720 3.8e-22 107.8 79 70.9
Sed0019596 Sechium edule HOM05D007705 ORTHO05D009720 4.9e-22 107.5 79 68.4
Migut.N01439 Erythranthe guttata HOM05D007705 ORTHO05D009720 1.1e-21 106.3 85 67.1
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.4e-21 105.9 78 69.2
RcHm_v2.0_Chr1g0354811 Rosa chinensis HOM05D007705 ORTHO05D009720 1.9e-21 105.5 79 69.6
MSTRG.28220 Avicennia marina HOM05D007705 ORTHO05D009720 4.2e-21 104.4 79 65.8
Ciclev10023145m.g Citrus clementina HOM05D007705 ORTHO05D009720 5.4e-21 104.0 80 67.5
CiPaw.01G059800 Carya illinoinensis HOM05D007705 ORTHO05D009720 9.3e-21 103.2 79 67.1
Duzib133G1093 Durio zibethinus HOM05D007705 ORTHO05D009720 9.3e-21 103.2 79 67.1
Cc02_g37860 Coffea canephora HOM05D007705 ORTHO05D009720 1.2e-20 102.8 79 65.8
Thecc.01G360600 Theobroma cacao HOM05D007705 ORTHO05D009720 1.6e-20 102.4 79 68.4
TWI14G1368 Tripterygium wilfordii HOM05D007705 ORTHO05D009720 2.7e-20 101.7 77 63.6
CANSAT56G1956 Cannabis sativa HOM05D007705 ORTHO05D009720 3.5e-20 101.3 80 63.8
ClCG05G001590 Citrullus lanatus HOM05D007705 ORTHO05D009720 3.5e-20 101.3 76 65.8
CSS0048404 Camellia sinensis var. sinensis HOM05D007705 ORTHO05D009720 4.6e-20 100.9 59 79.7
RcHm_v2.0_Chr1g0355061 Rosa chinensis HOM05D007705 ORTHO05D009720 1.7e-19 99.0 79 64.6
CAN.G116.6 Capsicum annuum HOM05D007705 ORTHO05D009720 2.3e-19 98.6 77 62.3
Gohir.D08G152400 Gossypium hirsutum HOM05D007705 ORTHO05D009720 3.0e-19 98.2 79 62.0
PGR031G2440 Punica granatum HOM05D007705 ORTHO05D009720 3.0e-19 98.2 79 64.6
Eucgr.D02283 Eucalyptus grandis HOM05D007705 ORTHO05D009720 3.9e-19 97.8 65 72.3
CDE02G0341 Ceratophyllum demersum HOM05D007705 ORTHO05D009720 5.1e-19 97.4 66 72.7
Sed0007089 Sechium edule HOM05D007705 ORTHO05D009720 5.1e-19 97.4 79 59.5
THA.LOC104801441 Tarenaya hassleriana HOM05D007705 ORTHO05D009720 5.1e-19 97.4 64 71.9
GSVIVG01026894001 Vitis vinifera HOM05D007705 ORTHO05D009720 6.6e-19 97.1 61 77.0
HanXRQChr16g0522821 Helianthus annuus HOM05D007705 ORTHO05D009720 8.7e-19 96.7 79 64.6
Lsat_1_v5_gn_4_36241 Lactuca sativa HOM05D007705 ORTHO05D009720 8.7e-19 96.7 66 71.2
Medtr8g031010 Medicago truncatula HOM05D007705 ORTHO05D009720 8.7e-19 96.7 79 63.3
Sc23g0003000 Simmondsia chinensis HOM05D007705 ORTHO05D009720 8.7e-19 96.7 79 62.0
Cpa.g.sc18.244 Carica papaya HOM05D007705 ORTHO05D009720 1.5e-18 95.9 72 69.4
Gohir.A08G130900 Gossypium hirsutum HOM05D007705 ORTHO05D009720 1.5e-18 95.9 79 59.5
Prupe.2G168000 Prunus persica HOM05D007705 ORTHO05D009720 1.5e-18 95.9 79 64.6
TPR.G15966 Trifolium pratense HOM05D007705 ORTHO05D009720 1.5e-18 95.9 77 66.2
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 1.9e-18 95.5 73 63.0
Peaxi162Scf00008g02124 Petunia axillaris HOM05D007705 ORTHO05D009720 1.9e-18 95.5 77 63.6
SalBow5G0166 Salvia bowleyana HOM05D007705 ORTHO05D009720 1.9e-18 95.5 77 59.7
CsaV3_3G008980 Cucumis sativus L. HOM05D007705 ORTHO05D009720 2.5e-18 95.1 77 57.1
MELO3C006116.2 Cucumis melo HOM05D007705 ORTHO05D009720 3.3e-18 94.7 77 57.1
PGSC0003DMG400010270 Solanum tuberosum HOM05D007705 ORTHO05D009720 3.3e-18 94.7 77 62.3
Phvul.010G097400 Phaseolus vulgaris HOM05D007705 ORTHO05D009720 4.3e-18 94.4 72 63.9
AUR62004343 Chenopodium quinoa HOM05D007705 ORTHO05D009720 5.6e-18 94.0 75 58.7
Hund16929 Selenicereus undatus HOM05D007705 ORTHO05D009720 5.6e-18 94.0 79 57.0
arahy.Tifrunner.gnm1.ann1.SPA1YZ Arachis hypogaea HOM05D007705 ORTHO05D009720 7.3e-18 93.6 79 58.2
arahy.Tifrunner.gnm1.ann1.P4N769 Arachis hypogaea HOM05D007705 ORTHO05D009720 9.6e-18 93.2 79 58.2
Manes.01G258400 Manihot esculenta HOM05D007705 ORTHO05D009720 9.6e-18 93.2 59 74.6
Glyma.03G010900 Glycine max HOM05D007705 ORTHO05D009720 1.6e-17 92.4 72 62.5
Carub.0006s3673 Capsella rubella HOM05D007705 ORTHO05D009720 2.1e-17 92.0 66 66.7
Potri.014G082800 Populus trichocarpa HOM05D007705 ORTHO05D009720 2.1e-17 92.0 61 70.5
Glyma.18G231800 Glycine max HOM05D007705 ORTHO05D009720 2.8e-17 91.7 79 64.6
Gorai.004G158300 Gossypium raimondii HOM05D007705 ORTHO05D009720 3.6e-17 91.3 79 60.8
Lj3g0020568 Lotus japonicus HOM05D007705 ORTHO05D009720 3.6e-17 91.3 79 59.5
Lalb_Chr17g0339761 Lupinus albus HOM05D007705 ORTHO05D009720 4.8e-17 90.9 79 59.5
Ah.05g180700 Amaranthus hybridus HOM05D007705 ORTHO05D009720 8.1e-17 90.1 76 57.9
FAN01G1472 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.1e-16 89.7 115 48.7
MD07G1139100 Malus domestica HOM05D007705 ORTHO05D009720 1.1e-16 89.7 79 58.2
PSO478G4887 Papaver somniferum HOM05D007705 ORTHO05D009720 1.8e-16 89.0 67 62.7
FAN06G1047 Fragaria x ananassa HOM05D007705 ORTHO05D009720 5.3e-16 87.4 109 51.4
AT4G00530 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 6.9e-16 87.0 75 60.0
AL6G52940 Arabidopsis lyrata HOM05D007705 ORTHO05D009720 9.0e-16 86.7 71 63.4
MBI18_g25521_MAGBIO Magnolia biondii HOM05D007705 ORTHO05D009720 2.0e-15 85.5 76 60.5
unitig_22.g6810 Utricularia gibba HOM05D007705 ORTHO05D009720 2.6e-15 85.1 72 59.7
Aa31LG1G11090 Aethionema arabicum HOM05D007705 ORTHO05D009720 3.4e-15 84.7 64 62.5
ATR0680G396 Amborella trichopoda HOM05D007705 ORTHO05D009720 3.4e-15 84.7 70 61.4
CARHR248690 Cardamine hirsuta HOM05D007705 ORTHO05D009720 3.4e-15 84.7 75 58.7
arahy.Tifrunner.gnm1.ann1.ELVS11 Arachis hypogaea HOM05D007705 ORTHO05D009720 7.6e-15 83.6 80 57.5
RcHm_v2.0_Chr4g0404631 Rosa chinensis HOM05D007705 ORTHO05D009720 1.3e-14 82.8 77 58.4
arahy.Tifrunner.gnm1.ann1.5FJ7GX Arachis hypogaea HOM05D007705 ORTHO05D009720 4.9e-14 80.9 80 56.2
Thhalv10009285m.g Eutrema salsugineum HOM05D007705 ORTHO05D009720 4.9e-14 80.9 60 63.3
arahy.Tifrunner.gnm1.ann1.1PM303 Arachis hypogaea HOM05D007705 ORTHO05D009720 6.4e-14 80.5 64 56.2
A10p00310 Brassica napus HOM05D007705 ORTHO05D009720 6.4e-14 80.5 59 66.1
C05p00320 Brassica napus HOM05D007705 ORTHO05D009720 6.4e-14 80.5 59 66.1
BolC5t28822H Brassica oleracea HOM05D007705 ORTHO05D009720 6.4e-14 80.5 59 66.1
BraA10t42308Z Brassica rapa HOM05D007705 ORTHO05D009720 6.4e-14 80.5 59 66.1
CARHR000600 Cardamine hirsuta HOM05D007705 ORTHO05D009720 1.1e-13 79.7 62 61.3
BcaB03g13609 Brassica carinata HOM05D007705 ORTHO05D009720 2.4e-13 78.6 60 63.3
Sp1g00580 Schrenkiella parvula HOM05D007705 ORTHO05D009720 2.4e-13 78.6 60 63.3
arahy.Tifrunner.gnm1.ann1.UQ99Y2 Arachis hypogaea HOM05D007705 ORTHO05D009720 4.2e-13 77.8 69 53.6
SHI13438 Sapria himalayana HOM05D007705 ORTHO05D009720 4.2e-13 77.8 68 51.5
Nitab4.5_0007064g0050 Nicotiana tabacum HOM05D007705 ORTHO05D009720 1.2e-12 76.3 42 83.3
Sabra14G0060000 Salix brachista HOM05D007705 ORTHO05D009720 2.1e-12 75.5 83 49.4
FAN10G1187 Fragaria x ananassa HOM05D007705 ORTHO05D009720 6.0e-12 73.9 79 54.4
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 1.0e-11 73.2 50 66.0
AT1G01725 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 1.8e-11 72.4 62 53.2
Nitab4.5_0000386g0120 Nicotiana tabacum HOM05D007705 ORTHO05D009720 2.3e-11 72.0 39 84.6
COL.COLO4_12699 Corchorus olitorius HOM05D007705 ORTHO05D009720 3.0e-11 71.6 151 35.8
VMungo0331G1758 Vigna mungo HOM05D007705 ORTHO05D009720 1.5e-10 69.3 56 58.9
FAN28G2457 Fragaria x ananassa HOM05D007705 ORTHO05D009720 7.4e-10 67.0 54 63.0
Hma1.2p1_0001F.1_g001390 Hydrangea macrophylla HOM05D007705 ORTHO05D009720 2.1e-09 65.5 38 73.7


User provided reference genes

Program Settings