Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g01503 Nelumbo nucifera HOM05D004296 ORTHO05D005045 9.5e-170 600.1 311 100.0
TAR268G0002 Trochodendron aralioides HOM05D004296 ORTHO05D005045 3.3e-90 335.9 316 61.4
TAR375G1065 Trochodendron aralioides HOM05D004296 ORTHO05D005045 2.8e-89 332.8 316 59.8
CSS0003782 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 8.3e-73 278.1 315 54.3
Dinv38945 Davidia involucrata HOM05D004296 ORTHO05D005045 9.1e-72 274.6 311 53.4
CSS0030285 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 3.5e-71 272.7 315 53.3
Hma1.2p1_0896F.1_g234000 Hydrangea macrophylla HOM05D004296 ORTHO05D005045 1.7e-70 270.4 312 51.3
Cfa013198 Carpinus fangiana HOM05D004296 ORTHO05D005045 1.1e-69 267.7 311 54.0
Haze_22818 Corylus avellana HOM05D004296 ORTHO05D005045 2.1e-68 263.5 312 52.2
QL12p012797 Quercus lobata HOM05D004296 ORTHO05D005045 5.2e-67 258.8 291 52.9
Manes.01G061800 Manihot esculenta HOM05D004296 ORTHO05D005045 9.8e-66 254.6 312 51.6
Thecc.03G278500 Theobroma cacao HOM05D004296 ORTHO05D005045 1.8e-64 250.4 306 51.0
MBI18_g42175_MAGBIO Magnolia biondii HOM05D004296 ORTHO05D005045 3.2e-64 249.6 314 51.0
Duzib068G1191 Durio zibethinus HOM05D004296 ORTHO05D005045 2.7e-63 246.5 310 50.0
Rhsim02G0231000 Rhododendron simsii HOM05D004296 ORTHO05D005045 5.9e-63 245.4 320 49.4
CiPaw.08G074700 Carya illinoinensis HOM05D004296 ORTHO05D005045 1.9e-61 240.4 337 45.7
CSS0037206 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 5.6e-61 238.8 315 49.2
Atru.chr9.2192 Acer truncatum HOM05D004296 ORTHO05D005045 2.8e-60 236.5 312 47.4
Actinidia02008 Actinidia chinensis HOM05D004296 ORTHO05D005045 1.2e-58 231.1 311 46.9
RcHm_v2.0_Chr7g0197731 Rosa chinensis HOM05D004296 ORTHO05D005045 8.3e-57 224.9 319 46.1
Eucgr.D01846 Eucalyptus grandis HOM05D004296 ORTHO05D005045 3.2e-56 223.0 322 46.3
FAN07G0166 Fragaria x ananassa HOM05D004296 ORTHO05D005045 4.1e-56 222.6 306 46.7
FAN12G3540 Fragaria x ananassa HOM05D004296 ORTHO05D005045 4.1e-56 222.6 303 46.2
COL.COLO4_34461 Corchorus olitorius HOM05D001502 ORTHO05D002950 7.0e-56 221.9 293 47.1
Cc10_g03910 Coffea canephora HOM05D004296 ORTHO05D005045 3.5e-55 219.5 355 42.3
SalBow1G8718 Salvia bowleyana HOM05D004296 ORTHO05D005045 7.8e-55 218.4 308 46.1
MSTRG.11985 Avicennia marina HOM05D004296 ORTHO05D005045 1.3e-54 217.6 314 45.2
FAN04G1575 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.3e-53 213.0 286 46.2
TWI36G1592 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 4.3e-53 212.6 295 45.1
DCAR_000614 Daucus carota HOM05D004296 ORTHO05D005045 5.6e-53 212.2 310 46.8
Prupe.5G099900 Prunus persica HOM05D004296 ORTHO05D005045 7.3e-53 211.8 398 38.9
Sc01g0009550 Simmondsia chinensis HOM05D004296 ORTHO05D005045 7.3e-53 211.8 311 44.1
Migut.A00767 Erythranthe guttata HOM05D004296 ORTHO05D005045 4.7e-52 209.1 314 45.9
Cpa.g.sc45.44 Carica papaya HOM05D004296 ORTHO05D005045 6.2e-52 208.8 297 44.8
QL05p087372 Quercus lobata HOM05D004296 ORTHO05D005045 4.0e-51 206.1 311 45.0
Lj8C228T3 Lonicera japonica HOM05D004296 ORTHO05D005045 5.2e-51 205.7 373 38.3
FvH4_5g02380 Fragaria vesca HOM05D004296 ORTHO05D005045 6.8e-51 205.3 299 44.8
Medtr6g011320 Medicago truncatula HOM05D004296 ORTHO05D005045 6.8e-51 205.3 314 43.9
MSTRG.11987 Avicennia marina HOM05D004296 ORTHO05D005045 8.9e-51 204.9 291 44.3
LjContig00312_ERROPOS870357g0005117 Lotus japonicus HOM05D004296 ORTHO05D005045 8.9e-51 204.9 310 44.2
Gohir.D05G298900 Gossypium hirsutum HOM05D004296 ORTHO05D005045 1.5e-50 204.1 275 48.0
Oeu009155.1 Olea europaea HOM05D004296 ORTHO05D005045 2.0e-50 203.8 330 42.1
FAN12G1413 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.6e-50 203.4 287 44.6
Gorai.009G316100 Gossypium raimondii HOM05D004296 ORTHO05D005045 2.6e-50 203.4 275 48.0
Lj2A555T5 Lonicera japonica HOM05D004296 ORTHO05D005045 2.6e-50 203.4 391 38.4
Gohir.A05G299133 Gossypium hirsutum HOM05D004296 ORTHO05D005045 7.5e-50 201.8 275 47.6
Glyma.01G220000 Glycine max HOM05D004296 ORTHO05D005045 9.8e-50 201.4 311 46.3
Actinidia14560 Actinidia chinensis HOM05D004296 ORTHO05D005045 1.3e-49 201.1 312 44.2
Phvul.002G157700 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 1.3e-49 201.1 309 45.6
TWI18G1338 Tripterygium wilfordii HOM05D004296 ORTHO05D005045 2.2e-49 200.3 316 42.4
EL10Ac8g19045 Beta vulgaris HOM05D004296 ORTHO05D005045 4.9e-49 199.1 320 41.9
MD14G1104200 Malus domestica HOM05D004296 ORTHO05D005045 6.4e-49 198.7 187 56.1
Hund05589 Selenicereus undatus HOM05D004296 ORTHO05D005045 1.1e-48 198.0 316 43.4
FvH4_4g36830 Fragaria vesca HOM05D004296 ORTHO05D005045 1.4e-48 197.6 287 43.9
Aqoxy3G03757 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 4.1e-48 196.1 273 44.7
SGA_v2.0_scaffold96G28938 Striga asiatica HOM05D004296 ORTHO05D005045 4.1e-48 196.1 293 43.0
PGR031G2604 Punica granatum HOM05D004296 ORTHO05D005045 5.4e-48 195.7 315 41.6
Glyma.20G061500 Glycine max HOM05D004296 ORTHO05D005045 7.1e-48 195.3 292 46.6
Phvul.005G126900 Phaseolus vulgaris HOM05D004296 ORTHO05D005045 7.1e-48 195.3 311 44.7
TPR.G3981 Trifolium pratense HOM05D004296 ORTHO05D005045 9.2e-48 194.9 314 44.3
Lj8A231T11 Lonicera japonica HOM05D004296 ORTHO05D005045 1.6e-47 194.1 397 36.5
FAN17G1800 Fragaria x ananassa HOM05D004296 ORTHO05D005045 2.1e-47 193.7 323 40.6
FAN08G1593 Fragaria x ananassa HOM05D004296 ORTHO05D005045 4.6e-47 192.6 292 42.8
VMungo1080G1277 Vigna mungo HOM05D004296 ORTHO05D005045 7.8e-47 191.8 311 44.1
CAN.G774.35 Capsicum annuum HOM05D004296 ORTHO05D005045 1.3e-46 191.0 342 40.6
PSO782G5383 Papaver somniferum HOM05D004296 ORTHO05D005045 1.3e-46 191.0 359 40.4
AUR62007249 Chenopodium quinoa HOM05D004296 ORTHO05D005045 3.0e-46 189.9 330 38.8
Nitab4.5_0001615g0200 Nicotiana tabacum HOM05D004296 ORTHO05D005045 3.9e-46 189.5 356 41.0
Peaxi162Scf00119g00828 Petunia axillaris HOM05D004296 ORTHO05D005045 3.9e-46 189.5 343 39.1
Medtr0768s0010 Medicago truncatula HOM05D004296 ORTHO05D005045 6.6e-46 188.7 312 43.3
Nitab4.5_0011683g0020 Nicotiana tabacum HOM05D004296 ORTHO05D005045 1.5e-45 187.6 351 40.5
CSS0027171 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 2.5e-45 186.8 171 60.8
PGSC0003DMG403005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 4.3e-45 186.0 378 38.4
Sopen04g002480 Solanum pennellii HOM05D004296 ORTHO05D005045 1.2e-44 184.5 387 37.0
CSS0028138 Camellia sinensis var. sinensis HOM05D004296 ORTHO05D005045 2.8e-44 183.3 171 59.6
PGSC0003DMG400012342 Solanum tuberosum HOM05D004296 ORTHO05D005045 2.8e-44 183.3 353 38.8
HanXRQChr03g0086721 Helianthus annuus HOM05D004296 ORTHO05D005045 3.6e-44 183.0 328 40.2
Lsat_1_v5_gn_6_87401 Lactuca sativa HOM05D004296 ORTHO05D005045 3.6e-44 183.0 304 40.1
SalBow7G4152 Salvia bowleyana HOM05D004296 ORTHO05D005045 3.6e-44 183.0 250 46.8
HanXRQChr03g0086731 Helianthus annuus HOM05D004296 ORTHO05D005045 4.7e-44 182.6 328 39.6
Ciclev10002111m.g Citrus clementina HOM05D004296 ORTHO05D005045 6.2e-44 182.2 311 41.2
Aqoxy3G00118 Aquilegia oxysepala HOM05D004296 ORTHO05D005045 8.1e-44 181.8 290 42.4
PSO478G0046 Papaver somniferum HOM05D004296 ORTHO05D005045 8.1e-44 181.8 361 40.2
MELO3C016352.2 Cucumis melo HOM05D004296 ORTHO05D005045 1.1e-43 181.4 354 37.9
TPR.G4254 Trifolium pratense HOM05D004296 ORTHO05D005045 1.1e-43 181.4 288 42.7
ClCG07G008080 Citrullus lanatus HOM05D004296 ORTHO05D005045 1.4e-43 181.0 313 42.5
Ah.12g054620 Amaranthus hybridus HOM05D004296 ORTHO05D005045 3.1e-43 179.9 331 40.5
FAN07G0122 Fragaria x ananassa HOM05D004296 ORTHO05D005045 3.1e-43 179.9 304 40.8
Lsat_1_v5_gn_5_92680 Lactuca sativa HOM05D004296 ORTHO05D005045 3.1e-43 179.9 301 38.9
MD07G1059600 Malus domestica HOM05D004296 ORTHO05D005045 3.1e-43 179.9 309 41.7
Peaxi162Scf00014g00082 Petunia axillaris HOM05D004296 ORTHO05D005045 6.8e-43 178.7 307 41.0
Hund17074 Selenicereus undatus HOM05D004296 ORTHO05D005045 6.8e-43 178.7 302 42.4
Lalb_Chr20g0109121 Lupinus albus HOM05D004296 ORTHO05D005045 1.2e-42 177.9 296 41.2
arahy.Tifrunner.gnm1.ann1.SKNY54 Arachis hypogaea HOM05D004296 ORTHO05D005045 1.5e-42 177.6 291 39.5
Oeu020615.1 Olea europaea HOM05D004296 ORTHO05D005045 2.6e-42 176.8 344 36.9
Solyc08g081040.3 Solanum lycopersicum HOM05D004296 ORTHO05D005045 5.8e-42 175.6 379 36.4
CsaV3_4G005960 Cucumis sativus L. HOM05D004296 ORTHO05D005045 7.6e-42 175.3 350 36.9
Solyc04g007420.4 Solanum lycopersicum HOM05D004296 ORTHO05D005045 9.9e-42 174.9 186 52.2
arahy.Tifrunner.gnm1.ann1.KQ253K Arachis hypogaea HOM05D004296 ORTHO05D005045 1.7e-41 174.1 291 40.5
PGSC0003DMG401005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 2.9e-41 173.3 186 52.7
Sopen08g029360 Solanum pennellii HOM05D004296 ORTHO05D005045 1.9e-40 170.6 403 34.7
PSO210G3801 Papaver somniferum HOM05D004296 ORTHO05D005045 2.4e-40 170.2 170 55.3
Cpa.g.sc39.99 Carica papaya HOM05D004296 ORTHO05D005045 5.4e-40 169.1 171 52.6
Psat7g254600 Pisum sativum HOM05D004296 ORTHO05D005045 1.6e-39 167.5 259 42.5
Sp7g00660 Schrenkiella parvula HOM05D004296 ORTHO05D005045 1.6e-39 167.5 280 43.9
SpUn0010_0140 Schrenkiella parvula HOM05D004296 ORTHO05D005045 1.6e-39 167.5 280 43.9
CDE01G0178 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 2.7e-39 166.8 312 39.1
C04p48320 Brassica napus HOM05D004296 ORTHO05D005045 1.3e-38 164.5 287 39.0
Potri.003G127200 Populus trichocarpa HOM05D004296 ORTHO05D005045 1.7e-38 164.1 324 36.1
Rhsim02G0230400 Rhododendron simsii HOM05D004296 ORTHO05D005045 8.6e-38 161.8 302 41.7
Carub.0007s3425 Capsella rubella HOM05D004296 ORTHO05D005045 1.9e-37 160.6 285 42.5
Psat1g061240 Pisum sativum HOM05D004296 ORTHO05D005045 1.9e-37 160.6 168 51.2
BcaC02g08973 Brassica carinata HOM05D004296 ORTHO05D005045 5.6e-37 159.1 288 40.3
BolC4t26425H Brassica oleracea HOM05D004296 ORTHO05D005045 5.6e-37 159.1 288 40.3
THA.LOC104809392 Tarenaya hassleriana HOM05D004296 ORTHO05D005045 1.6e-36 157.5 314 39.2
HPP92_021782 Vanilla planifolia HOM05D004296 ORTHO05D005045 2.1e-36 157.1 288 37.2
unitig_32.g11599 Utricularia gibba HOM05D004296 ORTHO05D005045 2.8e-36 156.8 312 39.1
CARHR213060 Cardamine hirsuta HOM05D004296 ORTHO05D005045 1.4e-35 154.5 279 40.1
Sed0022715 Sechium edule HOM05D004296 ORTHO05D005045 1.4e-35 154.5 384 33.6
CDE04G2006 Ceratophyllum demersum HOM05D004296 ORTHO05D005045 5.2e-35 152.5 310 36.1
arahy.Tifrunner.gnm1.ann1.CEX2YD Arachis hypogaea HOM05D004296 ORTHO05D005045 4.4e-34 149.4 208 43.3
Rhsim02G0230900 Rhododendron simsii HOM05D004296 ORTHO05D005045 1.3e-33 147.9 195 49.2
AL7G48180 Arabidopsis lyrata HOM05D004296 ORTHO05D005045 1.7e-33 147.5 258 42.6
Thhalv10028247m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 8.4e-33 145.2 282 37.6
SHI24854 Sapria himalayana HOM05D004296 ORTHO05D005045 1.4e-32 144.4 217 42.4
AT5G41270 Arabidopsis thaliana HOM05D004296 ORTHO05D005045 1.9e-32 144.1 283 39.6
PSO210G3847 Papaver somniferum HOM05D004296 ORTHO05D005045 3.2e-32 143.3 264 42.0
AUR62018749 Chenopodium quinoa HOM05D004296 ORTHO05D005045 7.1e-32 142.1 334 32.9
ECA240G3612 Erigeron canadensis HOM05D004296 ORTHO05D005045 7.1e-32 142.1 220 42.3
Haze_21601 Corylus avellana HOM05D004296 ORTHO05D005045 9.3e-32 141.7 244 43.9
Os01g0541600 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 9.3e-32 141.7 402 31.1
Lalb_Chr09g0320981 Lupinus albus HOM05D004296 ORTHO05D005045 1.2e-31 141.4 257 40.1
A04p14410 Brassica napus HOM05D004296 ORTHO05D005045 1.6e-31 141.0 152 52.0
BraA04t17088Z Brassica rapa HOM05D004296 ORTHO05D005045 1.6e-31 141.0 152 52.0
BcaB06g27609 Brassica carinata HOM05D004296 ORTHO05D005045 3.5e-31 139.8 206 43.7
ATR0680G148 Amborella trichopoda HOM05D004296 ORTHO05D005045 6.0e-31 139.0 285 36.1
arahy.Tifrunner.gnm1.ann1.W3QJXS Arachis hypogaea HOM05D004296 ORTHO05D005045 1.7e-30 137.5 253 40.3
Psat0s5346g0040 Pisum sativum HOM05D002378 ORTHO05D002936 3.0e-30 136.7 226 39.8
Aa31LG9G640 Aethionema arabicum HOM05D004296 ORTHO05D005045 9.6e-29 131.7 253 38.7
FAN13G2230 Fragaria x ananassa HOM05D004296 ORTHO05D005045 9.6e-29 131.7 118 55.9
CAN.G1069.19 Capsicum annuum HOM05D004296 ORTHO05D005045 6.2e-28 129.0 114 57.9
Zm00001eb162950 Zea mays HOM05D004296 ORTHO05D005045 1.4e-27 127.9 337 32.6
Thhalv10027895m.g Eutrema salsugineum HOM05D004296 ORTHO05D005045 3.1e-27 126.7 281 35.6
FAN18G3255 Fragaria x ananassa HOM05D004296 ORTHO05D005045 4.9e-25 119.4 87 62.1
Sed0002821 Sechium edule HOM05D004296 ORTHO05D005045 6.4e-25 119.0 281 35.9
Carub.0001s0729 Capsella rubella HOM05D004296 ORTHO05D005045 7.9e-23 112.1 205 38.0
Sabra01G0078900 Salix brachista HOM05D004296 ORTHO05D005045 4.3e-21 106.3 258 36.0
SEGI_21744 Sequoiadendron giganteum HOM05D004296 ORTHO05D005045 1.6e-20 104.4 249 33.7
Mapoly0057s0058 Marchantia polymorpha HOM05D004296 ORTHO05D005045 1.8e-19 100.9 262 31.3
Nitab4.5_0003441g0080 Nicotiana tabacum HOM05D004296 ORTHO05D005045 1.7e-17 94.4 224 35.3
Os01g0531000 Oryza sativa ssp. japonica HOM05D004296 ORTHO05D005045 4.9e-17 92.8 325 29.2
PGSC0003DMG402005999 Solanum tuberosum HOM05D004296 ORTHO05D005045 2.7e-15 87.0 95 51.6
Pp3c22_14200 Physcomitrium patens HOM05D004296 ORTHO05D005045 5.6e-13 79.3 113 42.5
Oeu009158.1 Olea europaea HOM05D004296 ORTHO05D005045 7.4e-13 79.0 158 36.1
ATR0680G137 Amborella trichopoda HOM05D004296 ORTHO05D005045 6.9e-11 72.4 221 29.0
Cfa014102 Carpinus fangiana HOM05D004296 ORTHO05D005045 4.5e-10 69.7 55 63.6
AagrBONN_evm.TU.Sc2ySwM_228.2126 Anthoceros agrestis HOM05D004296 ORTHO05D005045 2.9e-09 67.0 138 34.8
arahy.Tifrunner.gnm1.ann1.BHE6V7 Arachis hypogaea HOM05D004296 ORTHO05D005045 1.9e-08 64.3 296 25.7
Mapoly0057s0052 Marchantia polymorpha HOM05D004296 ORTHO05D005045 7.1e-08 62.4 89 42.7
FvH4_4g24221 Fragaria vesca HOM05D004296 ORTHO05D005045 1.6e-07 61.2 163 35.0
CAN.G774.37 Capsicum annuum HOM05D001502 ORTHO05D002950 1.0e-06 58.5 69 46.4
AagrBONN_evm.TU.Sc2ySwM_368.2814 Anthoceros agrestis HOM05D004296 ORTHO05D005045 5.1e-06 56.2 119 32.8
Cpa.g.sc39.98 Carica papaya HOM05D004296 ORTHO05D005045 5.1e-06 56.2 83 43.4


User provided reference genes

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