Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g01448 Nelumbo nucifera HOM05D000015 ORTHO05D279385 6.5e-44 180.3 86 100.0
Nn6g35694 Nelumbo nucifera HOM05D000015 ORTHO05D000249 8.0e-18 93.6 83 60.2
Dinv25551 Davidia involucrata HOM05D000015 ORTHO05D000249 1.2e-16 89.7 82 57.3
Nitab4.5_0000250g0060 Nicotiana tabacum HOM05D000015 ORTHO05D000249 1.7e-15 85.9 82 53.7
TAR383G0094 Trochodendron aralioides HOM05D000015 ORTHO05D000249 1.7e-15 85.9 84 53.6
Actinidia30226 Actinidia chinensis HOM05D000015 ORTHO05D000249 3.7e-15 84.7 82 51.2
Ciclev10007510m.g Citrus clementina HOM05D000015 ORTHO05D000249 3.7e-15 84.7 82 52.4
Duzib187G1659 Durio zibethinus HOM05D000015 ORTHO05D000249 8.3e-15 83.6 82 53.7
QL11p000993 Quercus lobata HOM05D000015 ORTHO05D000249 8.3e-15 83.6 82 51.2
Gorai.004G284900 Gossypium raimondii HOM05D000015 ORTHO05D000249 1.1e-14 83.2 82 52.4
Gohir.D08G267100 Gossypium hirsutum HOM05D000015 ORTHO05D000249 1.4e-14 82.8 82 52.4
Atru.chr7.1716 Acer truncatum HOM05D000015 ORTHO05D000249 1.8e-14 82.4 82 51.2
Peaxi162Scf00105g01011 Petunia axillaris HOM05D000015 ORTHO05D000249 1.8e-14 82.4 82 51.2
THA.LOC104815339 Tarenaya hassleriana HOM05D000015 ORTHO05D000249 1.8e-14 82.4 82 53.7
Cfa002980 Carpinus fangiana HOM05D000015 ORTHO05D000249 2.4e-14 82.0 82 51.2
Duzib168G1578 Durio zibethinus HOM05D000015 ORTHO05D000249 2.4e-14 82.0 82 51.2
MBI19_g09831_MAGBIO Magnolia biondii HOM05D000015 ORTHO05D000249 2.4e-14 82.0 82 47.6
CAN.G1318.14 Capsicum annuum HOM05D000015 ORTHO05D000249 4.1e-14 81.3 82 50.0
Gohir.D13G196355 Gossypium hirsutum HOM05D000015 ORTHO05D000249 4.1e-14 81.3 82 51.2
Gorai.013G223900 Gossypium raimondii HOM05D000015 ORTHO05D000249 4.1e-14 81.3 82 51.2
Medtr2g042130 Medicago truncatula HOM05D000015 ORTHO05D000249 4.1e-14 81.3 82 53.7
PGSC0003DMG400014489 Solanum tuberosum HOM05D000015 ORTHO05D000249 5.4e-14 80.9 82 50.0
CSS0040558 Camellia sinensis var. sinensis HOM05D000015 ORTHO05D000249 7.0e-14 80.5 81 50.6
Duzib150G1002 Durio zibethinus HOM05D000015 ORTHO05D000249 7.0e-14 80.5 83 51.8
Oeu035621.1 Olea europaea HOM05D000015 ORTHO05D000249 7.0e-14 80.5 81 51.9
Sopen08g021910 Solanum pennellii HOM05D000015 ORTHO05D000249 7.0e-14 80.5 82 50.0
Gohir.A13G190400 Gossypium hirsutum HOM05D000015 ORTHO05D000249 9.1e-14 80.1 82 51.2
Thecc.09G075800 Theobroma cacao HOM05D000015 ORTHO05D000249 9.1e-14 80.1 82 51.2
Cpa.g.sc28.26 Carica papaya HOM05D000015 ORTHO05D000249 1.6e-13 79.3 82 51.2
Nitab4.5_0011546g0020 Nicotiana tabacum HOM05D000015 ORTHO05D000249 1.6e-13 79.3 82 51.2
TPR.G27764 Trifolium pratense HOM05D000015 ORTHO05D000249 1.6e-13 79.3 82 53.7
Haze_26021 Corylus avellana HOM05D000015 ORTHO05D000249 2.0e-13 79.0 82 50.0
Potri.006G141200 Populus trichocarpa HOM05D000015 ORTHO05D000249 2.0e-13 79.0 83 51.8
Eucgr.C03260 Eucalyptus grandis HOM05D000015 ORTHO05D000249 2.7e-13 78.6 82 48.8
Eucgr.C03325 Eucalyptus grandis HOM05D000015 ORTHO05D000249 2.7e-13 78.6 82 48.8
Eucgr.L03290 Eucalyptus grandis HOM05D000015 ORTHO05D000249 2.7e-13 78.6 82 48.8
BcaB06g26866 Brassica carinata HOM05D000015 ORTHO05D000249 3.5e-13 78.2 82 51.2
Solyc07g041970.4 Solanum lycopersicum HOM05D000015 ORTHO05D000249 3.5e-13 78.2 82 50.0
Solyc08g067990.3 Solanum lycopersicum HOM05D000015 ORTHO05D000249 3.5e-13 78.2 82 48.8
Sopen07g021510 Solanum pennellii HOM05D000015 ORTHO05D000249 3.5e-13 78.2 82 50.0
THA.LOC104826594 Tarenaya hassleriana HOM05D000015 ORTHO05D000249 3.5e-13 78.2 82 50.0
vmacro17135 Vaccinium macrocarpon HOM05D000015 ORTHO05D000249 3.5e-13 78.2 82 47.6
CARHR103570 Cardamine hirsuta HOM05D000015 ORTHO05D000249 4.5e-13 77.8 82 50.0
Manes.14G164700 Manihot esculenta HOM05D000015 ORTHO05D000249 4.5e-13 77.8 81 51.9
Phvul.009G226900 Phaseolus vulgaris HOM05D000015 ORTHO05D000249 4.5e-13 77.8 82 51.2
PGR044G0434 Punica granatum HOM05D000015 ORTHO05D000249 4.5e-13 77.8 82 47.6
PGSC0003DMG400027892 Solanum tuberosum HOM05D000015 ORTHO05D000249 4.5e-13 77.8 82 50.0
vmacro17206 Vaccinium macrocarpon HOM05D000015 ORTHO05D000249 4.5e-13 77.8 82 47.6
DCAR_011944 Daucus carota HOM05D000015 ORTHO05D000249 5.9e-13 77.4 81 46.9
BcaC06g35943 Brassica carinata HOM05D000015 ORTHO05D000249 7.7e-13 77.0 82 51.2
C07p09500 Brassica napus HOM05D000015 ORTHO05D000249 7.7e-13 77.0 82 51.2
BolC7t41379H Brassica oleracea HOM05D000015 ORTHO05D000249 7.7e-13 77.0 82 51.2
DCAR_028478 Daucus carota HOM05D000015 ORTHO05D000249 7.7e-13 77.0 83 55.4
Peaxi162Scf00348g00818 Petunia axillaris HOM05D000015 ORTHO05D000249 7.7e-13 77.0 82 48.8
SGA_v2.0_scaffold609G53180 Striga asiatica HOM05D000015 ORTHO05D000249 7.7e-13 77.0 87 49.4
CAN.G595.2 Capsicum annuum HOM05D000015 ORTHO05D000249 1.0e-12 76.6 82 46.3
Oeu035917.1 Olea europaea HOM05D000015 ORTHO05D000249 1.0e-12 76.6 82 50.0
PSO724G0693 Papaver somniferum HOM05D000015 ORTHO05D000249 1.0e-12 76.6 89 44.9
Psat1g134480 Pisum sativum HOM05D000015 ORTHO05D000249 1.0e-12 76.6 82 51.2
Dinv42399 Davidia involucrata HOM05D000015 ORTHO05D000249 1.3e-12 76.3 83 53.0
Nitab4.5_0009541g0020 Nicotiana tabacum HOM05D000015 ORTHO05D000249 1.3e-12 76.3 82 47.6
CANSAT56G1197 Cannabis sativa HOM05D000015 ORTHO05D000249 1.7e-12 75.9 83 48.2
Lj6g0013911 Lotus japonicus HOM05D000015 ORTHO05D000249 1.7e-12 75.9 82 50.0
AT2G05920 Arabidopsis thaliana HOM05D000015 ORTHO05D000249 2.3e-12 75.5 82 48.8
A07p06360 Brassica napus HOM05D000015 ORTHO05D000249 2.3e-12 75.5 82 51.2
BraA07t28430Z Brassica rapa HOM05D000015 ORTHO05D000249 2.3e-12 75.5 82 51.2
Ca_02200_v3 Cicer arietinum L. HOM05D000015 ORTHO05D000249 2.3e-12 75.5 82 51.2
Glyma.09G070000 Glycine max HOM05D000015 ORTHO05D000249 2.9e-12 75.1 82 50.0
Gohir.A08G246101 Gossypium hirsutum HOM05D000015 ORTHO05D000249 2.9e-12 75.1 82 52.4
Hma1.2p1_0169F.1_g074470 Hydrangea macrophylla HOM05D000015 ORTHO05D000249 2.9e-12 75.1 82 50.0
Nitab4.5_0000343g0260 Nicotiana tabacum HOM05D000015 ORTHO05D000249 2.9e-12 75.1 82 47.6
PSO135G0197 Papaver somniferum HOM05D000015 ORTHO05D000249 2.9e-12 75.1 86 46.5
QL11p055235 Quercus lobata HOM05D000015 ORTHO05D000249 2.9e-12 75.1 81 50.6
ATR0598G027 Amborella trichopoda HOM05D000015 ORTHO05D000249 3.8e-12 74.7 82 50.0
MD15G1218800 Malus domestica HOM05D000015 ORTHO05D000249 3.8e-12 74.7 82 50.0
VMungo1309G1165 Vigna mungo HOM05D000015 ORTHO05D000249 3.8e-12 74.7 82 50.0
AL3G43500 Arabidopsis lyrata HOM05D000015 ORTHO05D000249 5.0e-12 74.3 82 48.8
arahy.Tifrunner.gnm1.ann1.HP46HH Arachis hypogaea HOM05D000015 ORTHO05D000249 5.0e-12 74.3 82 50.0
COL.COLO4_18089 Corchorus olitorius HOM05D000015 ORTHO05D000249 5.0e-12 74.3 82 50.0
Prupe.7G197100 Prunus persica HOM05D000015 ORTHO05D000249 5.0e-12 74.3 83 51.8
CiPaw.03G205400 Carya illinoinensis HOM05D000015 ORTHO05D000249 6.6e-12 73.9 82 48.8
CiPaw.04G142600 Carya illinoinensis HOM05D000015 ORTHO05D000249 6.6e-12 73.9 82 48.8
Sp3g24330 Schrenkiella parvula HOM05D000015 ORTHO05D000249 8.6e-12 73.6 82 48.8
Thhalv10002410m.g Eutrema salsugineum HOM05D000015 ORTHO05D000249 1.1e-11 73.2 82 46.3
Aqoxy7G04101 Aquilegia oxysepala HOM05D000015 ORTHO05D000249 1.5e-11 72.8 83 48.2
MBI12_g22443_MAGBIO Magnolia biondii HOM05D000015 ORTHO05D000249 1.5e-11 72.8 82 45.1
Manes.16G094900 Manihot esculenta HOM05D000015 ORTHO05D000249 1.5e-11 72.8 83 47.0
HPP92_028261 Vanilla planifolia HOM05D000015 ORTHO05D000249 2.5e-11 72.0 83 44.6
Lj4C913T6 Lonicera japonica HOM05D000015 ORTHO05D000249 3.3e-11 71.6 82 46.3
Aa31sc627G10 Aethionema arabicum HOM05D000015 ORTHO05D000249 4.2e-11 71.2 82 47.6
Ca_09304_v3 Cicer arietinum L. HOM05D000015 ORTHO05D000249 4.2e-11 71.2 81 49.4
ECA234G4306 Erigeron canadensis HOM05D000015 ORTHO05D000249 4.2e-11 71.2 82 47.6
Eucgr.C00797 Eucalyptus grandis HOM05D000015 ORTHO05D000249 5.5e-11 70.9 82 46.3
Lalb_Chr12g0200211 Lupinus albus HOM05D000015 ORTHO05D000249 5.5e-11 70.9 81 49.4
MD02G1093500 Malus domestica HOM05D000015 ORTHO05D000249 5.5e-11 70.9 82 48.8
arahy.Tifrunner.gnm1.ann1.65N627 Arachis hypogaea HOM05D000015 ORTHO05D000249 7.2e-11 70.5 82 48.8
Lalb_Chr13g0292291 Lupinus albus HOM05D000015 ORTHO05D000249 7.2e-11 70.5 82 47.6
Lalb_Chr13g0292311 Lupinus albus HOM05D000015 ORTHO05D000249 7.2e-11 70.5 82 47.6
Lalb_Chr13g0292321 Lupinus albus HOM05D000015 ORTHO05D000249 7.2e-11 70.5 82 47.6
Lalb_Chr13g0292331 Lupinus albus HOM05D000015 ORTHO05D000249 7.2e-11 70.5 82 47.6
Lalb_Chr13g0292361 Lupinus albus HOM05D000015 ORTHO05D000249 7.2e-11 70.5 82 47.6
Lalb_Chr13g0292351 Lupinus albus HOM05D000015 ORTHO05D000249 9.5e-11 70.1 82 47.6
Sed0019841 Sechium edule HOM05D000015 ORTHO05D000249 9.5e-11 70.1 82 45.1
Sed0015954 Sechium edule HOM05D000015 ORTHO05D000249 1.2e-10 69.7 82 43.9
Zm00001eb048680 Zea mays HOM05D000015 ORTHO05D000249 1.2e-10 69.7 80 43.8
arahy.Tifrunner.gnm1.ann1.J106XQ Arachis hypogaea HOM05D000015 ORTHO05D000249 1.6e-10 69.3 82 48.8
HanXRQChr10g0319731 Helianthus annuus HOM05D000015 ORTHO05D000249 1.6e-10 69.3 82 43.9
Lalb_Chr13g0292341 Lupinus albus HOM05D000015 ORTHO05D000249 1.6e-10 69.3 82 47.6
Carub.0003s2708 Capsella rubella HOM05D000015 ORTHO05D000249 2.1e-10 68.9 82 45.1
Sabra06G0110300 Salix brachista HOM05D000015 ORTHO05D000249 2.1e-10 68.9 83 48.2
MELO3C015526.2 Cucumis melo HOM05D000015 ORTHO05D000249 2.8e-10 68.6 82 46.3
CsaV3_1G041110 Cucumis sativus L. HOM05D000015 ORTHO05D000249 2.8e-10 68.6 82 46.3
Lalb_Chr13g0292371 Lupinus albus HOM05D000015 ORTHO05D000249 2.8e-10 68.6 82 46.3
Lalb_Chr13g0292381 Lupinus albus HOM05D000015 ORTHO05D000249 2.8e-10 68.6 82 46.3
arahy.Tifrunner.gnm1.ann1.ASR8I2 Arachis hypogaea HOM05D000015 ORTHO05D000249 3.6e-10 68.2 82 48.8
ClCG03G015030 Citrullus lanatus HOM05D000015 ORTHO05D000249 3.6e-10 68.2 82 45.1
Os09g0441000 Oryza sativa ssp. japonica HOM05D000015 ORTHO05D000249 3.6e-10 68.2 80 43.8
EL10Ac8g19050 Beta vulgaris HOM05D000015 ORTHO05D000249 4.7e-10 67.8 82 43.9
Eucgr.C00800 Eucalyptus grandis HOM05D000015 ORTHO05D000249 4.7e-10 67.8 82 45.1
Lsat_1_v5_gn_5_140441 Lactuca sativa HOM05D000015 ORTHO05D000249 4.7e-10 67.8 82 43.9
Lalb_Chr08g0232611 Lupinus albus HOM05D000015 ORTHO05D000249 4.7e-10 67.8 82 46.3
Psat4g018360 Pisum sativum HOM05D000015 ORTHO05D000249 4.7e-10 67.8 80 47.5
Oeu063453.1 Olea europaea HOM05D000015 ORTHO05D000249 6.1e-10 67.4 83 49.4
Hund08817 Selenicereus undatus HOM05D000015 ORTHO05D000249 6.1e-10 67.4 82 45.1
Zm00001eb314120 Zea mays HOM05D000015 ORTHO05D000249 6.1e-10 67.4 80 38.8
RcHm_v2.0_Chr2g0095311 Rosa chinensis HOM05D000015 ORTHO05D000249 8.0e-10 67.0 83 48.2
Migut.J00919 Erythranthe guttata HOM05D000015 ORTHO05D000249 1.0e-09 66.6 80 46.2
Eucgr.C00799 Eucalyptus grandis HOM05D000015 ORTHO05D000249 1.0e-09 66.6 82 43.9
QL11p055072 Quercus lobata HOM05D000015 ORTHO05D000249 1.0e-09 66.6 81 44.4
Glyma.13G110800 Glycine max HOM05D000015 ORTHO05D000249 1.4e-09 66.2 82 46.3
Lalb_Chr08g0232791 Lupinus albus HOM05D000015 ORTHO05D000249 1.4e-09 66.2 82 46.3
TPR.G12719 Trifolium pratense HOM05D000015 ORTHO05D000249 1.4e-09 66.2 87 46.0
DCAR_011943 Daucus carota HOM05D000015 ORTHO05D000249 1.8e-09 65.9 86 44.2
Manes.06G013300 Manihot esculenta HOM05D000015 ORTHO05D000249 1.8e-09 65.9 81 43.2
Medtr4g125180 Medicago truncatula HOM05D000015 ORTHO05D000249 1.8e-09 65.9 87 43.7
Os10g0394200 Oryza sativa ssp. japonica HOM05D000015 ORTHO05D000249 1.8e-09 65.9 81 43.2
Lsat_1_v5_gn_7_35140 Lactuca sativa HOM05D000015 ORTHO05D000249 2.3e-09 65.5 86 44.2
Manes.06G013400 Manihot esculenta HOM05D000015 ORTHO05D000249 2.3e-09 65.5 80 45.0
SalBow6G0589 Salvia bowleyana HOM05D000015 ORTHO05D000249 2.3e-09 65.5 83 47.0
unitig_21.g21002 Utricularia gibba HOM05D000015 ORTHO05D000249 2.3e-09 65.5 85 47.1
CDE11G1097 Ceratophyllum demersum HOM05D000015 ORTHO05D000249 3.0e-09 65.1 82 41.5
AUR62025255 Chenopodium quinoa HOM05D000015 ORTHO05D000249 3.0e-09 65.1 82 42.7
Migut.L01570 Erythranthe guttata HOM05D000015 ORTHO05D000249 4.0e-09 64.7 80 45.0
Ah.09g229310 Amaranthus hybridus HOM05D000015 ORTHO05D000249 5.2e-09 64.3 82 41.5
TWI34G0403 Tripterygium wilfordii HOM05D000015 ORTHO05D000249 5.2e-09 64.3 81 43.2
HPP92_019119 Vanilla planifolia HOM05D000015 ORTHO05D000249 5.2e-09 64.3 79 41.8
FAN26G0717 Fragaria x ananassa HOM05D000015 ORTHO05D000249 6.8e-09 63.9 82 46.3
FAN26G2266 Fragaria x ananassa HOM05D000015 ORTHO05D000249 6.8e-09 63.9 82 46.3
FAN28G1540 Fragaria x ananassa HOM05D000015 ORTHO05D000249 6.8e-09 63.9 82 46.3
Lalb_Chr08g0235251 Lupinus albus HOM05D000015 ORTHO05D000249 6.8e-09 63.9 82 45.1
Lalb_Chr08g0235281 Lupinus albus HOM05D000015 ORTHO05D000249 6.8e-09 63.9 82 45.1
Lalb_Chr08g0235291 Lupinus albus HOM05D000015 ORTHO05D000249 6.8e-09 63.9 82 45.1
Lalb_Chr08g0235301 Lupinus albus HOM05D000015 ORTHO05D000249 6.8e-09 63.9 82 45.1
AUR62028929 Chenopodium quinoa HOM05D000015 ORTHO05D000249 8.9e-09 63.5 82 40.2
FAN19G1693 Fragaria x ananassa HOM05D000015 ORTHO05D000249 8.9e-09 63.5 82 46.3
FAN23G0982 Fragaria x ananassa HOM05D000015 ORTHO05D000249 8.9e-09 63.5 82 46.3
VMungo1215G0616 Vigna mungo HOM05D000015 ORTHO05D000249 1.2e-08 63.2 82 43.9
Ah.14g084910 Amaranthus hybridus HOM05D000015 ORTHO05D000249 1.5e-08 62.8 82 41.5
CDE05G0174 Ceratophyllum demersum HOM05D000015 ORTHO05D000249 1.5e-08 62.8 82 41.5
Lalb_Chr13g0292301 Lupinus albus HOM05D000015 ORTHO05D000249 1.5e-08 62.8 54 55.6
Manes.06G013200 Manihot esculenta HOM05D000015 ORTHO05D000249 1.5e-08 62.8 82 42.7
Manes.06G013250 Manihot esculenta HOM05D000015 ORTHO05D000249 1.5e-08 62.8 82 42.7
Sc08g0008920 Simmondsia chinensis HOM05D000015 ORTHO05D000249 1.5e-08 62.8 82 40.2
Glyma.17G048700 Glycine max HOM05D000015 ORTHO05D000249 1.7e-07 59.3 82 41.5
TWI63G1227 Tripterygium wilfordii HOM05D000015 ORTHO05D000249 1.7e-07 59.3 81 40.7
Phvul.003G130300 Phaseolus vulgaris HOM05D000015 ORTHO05D000249 2.2e-07 58.9 82 41.5
Potri.003G118800 Populus trichocarpa HOM05D000015 ORTHO05D000803 8.3e-07 57.0 78 38.5
SGA_v2.0_scaffold21G09497 Striga asiatica HOM05D000015 ORTHO05D000249 1.4e-06 56.2 79 38.0
FAN06G3338 Fragaria x ananassa HOM05D000015 ORTHO05D000270 3.1e-06 55.1 79 35.4
HanXRQChr15g0472751 Helianthus annuus HOM05D000015 ORTHO05D000249 5.4e-06 54.3 81 43.2
PGR142G0949 Punica granatum HOM05D000015 ORTHO05D000249 5.4e-06 54.3 81 37.0
Ca_06674_v3 Cicer arietinum L. HOM05D000015 ORTHO05D000803 7.0e-06 53.9 78 37.2
Migut.E01315 Erythranthe guttata HOM05D000015 ORTHO05D000803 7.0e-06 53.9 78 35.9
FAN08G3306 Fragaria x ananassa HOM05D000015 ORTHO05D000803 9.2e-06 53.5 78 33.3
FAN13G2840 Fragaria x ananassa HOM05D000015 ORTHO05D000803 9.2e-06 53.5 78 35.9


User provided reference genes

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