Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g01427 Nelumbo nucifera HOM05D005277 ORTHO05D006319 7.4e-48 193.4 86 100.0
Potri.014G079800 Populus trichocarpa HOM05D005277 ORTHO05D006319 8.5e-44 179.9 85 94.1
MBI07_g12793_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 3.2e-43 177.9 89 88.8
Manes.01G260200 Manihot esculenta HOM05D005277 ORTHO05D006319 5.5e-43 177.2 86 91.9
Potri.002G155800 Populus trichocarpa HOM05D005277 ORTHO05D006319 9.4e-43 176.4 85 91.8
CiPaw.02G027600 Carya illinoinensis HOM05D005277 ORTHO05D006319 1.2e-42 176.0 86 89.5
Cfa003961 Carpinus fangiana HOM05D005277 ORTHO05D006319 2.1e-42 175.3 86 89.5
Prupe.2G159900 Prunus persica HOM05D005277 ORTHO05D006319 2.7e-42 174.9 84 89.3
Manes.05G038000 Manihot esculenta HOM05D005277 ORTHO05D006319 3.6e-42 174.5 86 90.7
CsaV3_2G015020 Cucumis sativus L. HOM05D005277 ORTHO05D006319 7.9e-42 173.3 84 92.9
Duzib133G1303 Durio zibethinus HOM05D005277 ORTHO05D006319 1.0e-41 172.9 86 90.7
Duzib138G0488 Durio zibethinus HOM05D005277 ORTHO05D006319 1.4e-41 172.6 86 90.7
MELO3C023322.2 Cucumis melo HOM05D005277 ORTHO05D006319 2.3e-41 171.8 84 90.5
FAN01G0371 Fragaria x ananassa HOM05D005277 ORTHO05D006319 3.0e-41 171.4 83 90.4
FAN06G3712 Fragaria x ananassa HOM05D005277 ORTHO05D006319 3.0e-41 171.4 83 90.4
FAN06G3877 Fragaria x ananassa HOM05D005277 ORTHO05D006319 3.0e-41 171.4 83 90.4
CiPaw.01G056300 Carya illinoinensis HOM05D005277 ORTHO05D006319 3.9e-41 171.0 86 87.2
FAN03G2608 Fragaria x ananassa HOM05D005277 ORTHO05D006319 3.9e-41 171.0 84 89.3
GSVIVG01026823001 Vitis vinifera HOM05D005277 ORTHO05D006319 5.1e-41 170.6 84 91.7
CDE06G0676 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 6.7e-41 170.2 82 89.0
RcHm_v2.0_Chr1g0353371 Rosa chinensis HOM05D005277 ORTHO05D006319 6.7e-41 170.2 85 89.4
Sc23g0003110 Simmondsia chinensis HOM05D005277 ORTHO05D006319 1.1e-40 169.5 84 88.1
TWI59G0525 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 1.1e-40 169.5 89 87.6
TWI23G0263 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 1.5e-40 169.1 89 86.5
arahy.Tifrunner.gnm1.ann1.A7XXX8 Arachis hypogaea HOM05D005277 ORTHO05D006319 2.6e-40 168.3 86 84.9
arahy.Tifrunner.gnm1.ann1.I9WHAY Arachis hypogaea HOM05D005277 ORTHO05D006319 2.6e-40 168.3 86 84.9
ClCG11G004150 Citrullus lanatus HOM05D005277 ORTHO05D006319 3.3e-40 167.9 84 89.3
MD01G1052300 Malus domestica HOM05D005277 ORTHO05D006319 3.3e-40 167.9 85 87.1
Sed0006100 Sechium edule HOM05D005277 ORTHO05D006319 3.3e-40 167.9 85 88.2
CDE05G2617 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 7.4e-40 166.8 84 85.7
Oeu021782.1 Olea europaea HOM05D005277 ORTHO05D006319 7.4e-40 166.8 89 83.1
Actinidia34103 Actinidia chinensis HOM05D005277 ORTHO05D006319 1.7e-39 165.6 88 87.5
Gorai.004G156900 Gossypium raimondii HOM05D005277 ORTHO05D006319 1.7e-39 165.6 84 88.1
Ciclev10023111m.g Citrus clementina HOM05D005277 ORTHO05D006319 2.2e-39 165.2 85 88.2
Actinidia32868 Actinidia chinensis HOM05D005277 ORTHO05D006319 3.7e-39 164.5 88 86.4
Hund16947 Selenicereus undatus HOM05D005277 ORTHO05D006319 3.7e-39 164.5 84 84.5
COL.COLO4_12662 Corchorus olitorius HOM05D005277 ORTHO05D006319 8.2e-39 163.3 85 85.9
Gohir.A08G129800 Gossypium hirsutum HOM05D005277 ORTHO05D006319 8.2e-39 163.3 84 88.1
vmacro06693 Vaccinium macrocarpon HOM05D005277 ORTHO05D006319 8.2e-39 163.3 86 86.0
CSS0040378 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 1.1e-38 162.9 87 85.1
Thecc.01G365200 Theobroma cacao HOM05D005277 ORTHO05D006319 1.8e-38 162.2 85 88.2
Hma1.2p1_2482F.1_g323010 Hydrangea macrophylla HOM05D005277 ORTHO05D006319 2.4e-38 161.8 87 86.2
PGR042G3267 Punica granatum HOM05D005277 ORTHO05D006319 3.1e-38 161.4 86 81.4
CARHR248750 Cardamine hirsuta HOM05D005277 ORTHO05D006319 4.1e-38 161.0 82 86.6
Thhalv10026679m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 4.1e-38 161.0 82 86.6
Os09g0560300 Oryza sativa ssp. japonica HOM05D005277 ORTHO05D006319 5.3e-38 160.6 83 85.5
Gohir.D07G149400 Gossypium hirsutum HOM05D005277 ORTHO05D006319 7.0e-38 160.2 84 88.1
Gorai.001G170800 Gossypium raimondii HOM05D005277 ORTHO05D006319 7.0e-38 160.2 84 88.1
Phvul.008G068800 Phaseolus vulgaris HOM05D005277 ORTHO05D006319 9.1e-38 159.8 84 83.3
Migut.F00352 Erythranthe guttata HOM05D005277 ORTHO05D006319 1.2e-37 159.5 86 83.7
Sed0005058 Sechium edule HOM05D005277 ORTHO05D006319 1.2e-37 159.5 84 84.5
Thhalv10029049m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 2.0e-37 158.7 82 85.4
THA.LOC104801449 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 2.0e-37 158.7 85 84.7
HPP92_016701 Vanilla planifolia HOM05D005277 ORTHO05D006319 2.0e-37 158.7 89 79.8
CANSAT56G2015 Cannabis sativa HOM05D005277 ORTHO05D006319 2.6e-37 158.3 86 82.6
HanXRQChr08g0209231 Helianthus annuus HOM05D005277 ORTHO05D006319 2.6e-37 158.3 86 81.4
Aa31LG5G410 Aethionema arabicum HOM05D005277 ORTHO05D006319 3.5e-37 157.9 82 85.4
A03p65670 Brassica napus HOM05D005277 ORTHO05D006319 3.5e-37 157.9 82 84.1
BraA03t15618Z Brassica rapa HOM05D005277 ORTHO05D006319 3.5e-37 157.9 82 84.1
EL10Ac1g00522 Beta vulgaris HOM05D005277 ORTHO05D006319 4.5e-37 157.5 84 78.6
Gohir.A07G143600 Gossypium hirsutum HOM05D005277 ORTHO05D006319 4.5e-37 157.5 83 86.7
HanXRQChr02g0054711 Helianthus annuus HOM05D005277 ORTHO05D006319 5.9e-37 157.1 85 82.4
Lj1g0008169 Lotus japonicus HOM05D005277 ORTHO05D006319 5.9e-37 157.1 88 81.8
Sp6g00620 Schrenkiella parvula HOM05D005277 ORTHO05D006319 5.9e-37 157.1 82 82.9
C07p62700 Brassica napus HOM05D005277 ORTHO05D006319 7.7e-37 156.8 84 82.1
BolC7t46684H Brassica oleracea HOM05D005277 ORTHO05D006319 7.7e-37 156.8 84 82.1
TPR.G37794 Trifolium pratense HOM05D005277 ORTHO05D006319 1.0e-36 156.4 84 82.1
Zm00001eb104680 Zea mays HOM05D005277 ORTHO05D006319 1.3e-36 156.0 83 88.0
Lsat_1_v5_gn_8_8281 Lactuca sativa HOM05D005277 ORTHO05D006319 1.7e-36 155.6 90 77.8
Nitab4.5_0000080g0040 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.7e-36 155.6 86 77.9
THA.LOC104817018 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 1.7e-36 155.6 80 86.2
Gohir.D08G151200 Gossypium hirsutum HOM05D005277 ORTHO05D006319 2.9e-36 154.8 85 83.5
Peaxi162Scf01969g00020 Petunia axillaris HOM05D005277 ORTHO05D006319 2.9e-36 154.8 86 79.1
Lalb_Chr19g0127071 Lupinus albus HOM05D005277 ORTHO05D006319 3.8e-36 154.5 85 82.4
AL6G52850 Arabidopsis lyrata HOM05D005277 ORTHO05D006319 5.0e-36 154.1 83 84.3
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 5.0e-36 154.1 81 82.7
Glyma.09G263000 Glycine max HOM05D005277 ORTHO05D006319 8.5e-36 153.3 85 81.2
Lalb_Chr01g0021101 Lupinus albus HOM05D005277 ORTHO05D006319 8.5e-36 153.3 85 78.8
Carub.0006s3664 Capsella rubella HOM05D005277 ORTHO05D006319 1.1e-35 152.9 82 81.7
Psat3g111720 Pisum sativum HOM05D005277 ORTHO05D006319 1.1e-35 152.9 83 79.5
PSO782G2674 Papaver somniferum HOM05D005277 ORTHO05D006319 1.4e-35 152.5 89 77.5
Nitab4.5_0000716g0150 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.9e-35 152.1 86 77.9
Nitab4.5_0003365g0020 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.9e-35 152.1 86 77.9
ECA233G3829 Erigeron canadensis HOM05D005277 ORTHO05D006319 2.5e-35 151.8 86 75.6
BcaNung07162 Brassica carinata HOM05D005277 ORTHO05D006319 3.2e-35 151.4 84 81.0
AT4G00585 Arabidopsis thaliana HOM05D005277 ORTHO05D006319 4.2e-35 151.0 83 83.1
Medtr7g076630 Medicago truncatula HOM05D005277 ORTHO05D006319 4.2e-35 151.0 84 76.2
Aqoxy7G00369 Aquilegia oxysepala HOM05D005277 ORTHO05D006319 5.5e-35 150.6 85 81.2
Glyma.18G229200 Glycine max HOM05D005277 ORTHO05D006319 5.5e-35 150.6 85 80.0
A03p32120 Brassica napus HOM05D005277 ORTHO05D006319 9.4e-35 149.8 84 79.8
BraA03t12382Z Brassica rapa HOM05D005277 ORTHO05D006319 9.4e-35 149.8 84 79.8
BcaC04g24159 Brassica carinata HOM05D005277 ORTHO05D006319 1.6e-34 149.1 84 79.8
Solyc03g025910.3 Solanum lycopersicum HOM05D005277 ORTHO05D006319 1.6e-34 149.1 86 75.6
Sopen03g004720 Solanum pennellii HOM05D005277 ORTHO05D006319 1.6e-34 149.1 86 75.6
PGSC0003DMG400014288 Solanum tuberosum HOM05D005277 ORTHO05D006319 1.6e-34 149.1 86 75.6
BcaB01g02260 Brassica carinata HOM05D005277 ORTHO05D006319 6.1e-34 147.1 84 78.6
A09p00410 Brassica napus HOM05D005277 ORTHO05D006319 6.1e-34 147.1 83 79.5
Ca_07884_v3 Cicer arietinum L. HOM05D005277 ORTHO05D006319 8.0e-34 146.7 84 77.4
BcaC01g06868 Brassica carinata HOM05D005277 ORTHO05D006319 1.4e-33 146.0 82 79.3
BolC3t16185H Brassica oleracea HOM05D005277 ORTHO05D006319 1.4e-33 146.0 84 81.0
Peaxi162Scf00915g00031 Petunia axillaris HOM05D005277 ORTHO05D006319 1.8e-33 145.6 86 72.1
C03p39140 Brassica napus HOM05D005277 ORTHO05D006319 8.8e-33 143.3 84 76.2
AUR62022763 Chenopodium quinoa HOM05D005277 ORTHO05D006319 8.8e-33 143.3 83 72.3
BcaNung05357 Brassica carinata HOM05D005277 ORTHO05D006319 1.1e-32 142.9 82 78.0
AUR62004311 Chenopodium quinoa HOM05D005277 ORTHO05D006319 1.5e-32 142.5 83 72.3
GSVIVG01010541001 Vitis vinifera HOM05D005277 ORTHO05D006319 2.6e-32 141.7 63 98.4
Cc00_g02540 Coffea canephora HOM05D005277 ORTHO05D006319 2.2e-31 138.7 80 78.8
SalBow2G0266 Salvia bowleyana HOM05D005277 ORTHO05D006319 2.4e-30 135.2 98 66.3
Rhsim03G0179700 Rhododendron simsii HOM05D005277 ORTHO05D006319 4.1e-30 134.4 156 48.1
DCAR_018191 Daucus carota HOM05D005277 ORTHO05D006319 7.0e-30 133.7 74 78.4
Cc02_g03110 Coffea canephora HOM05D005277 ORTHO05D006319 1.5e-27 125.9 63 85.7
Haze_15461 Corylus avellana HOM05D005277 ORTHO05D006319 2.7e-26 121.7 63 87.3
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 8.0e-26 120.2 62 88.7
RcHm_v2.0_Chr1g0353351 Rosa chinensis HOM05D005277 ORTHO05D006319 2.3e-25 118.6 61 88.5
Sabra14G0058000 Salix brachista HOM05D005277 ORTHO05D006319 6.7e-25 117.1 61 90.2
Hund27308 Selenicereus undatus HOM05D005277 ORTHO05D006319 1.2e-24 116.3 62 83.9
QL08p049830 Quercus lobata HOM05D005277 ORTHO05D006319 2.0e-24 115.5 62 85.5
MBI06_g06483_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 5.7e-24 114.0 63 85.7
Mapoly0023s0078 Marchantia polymorpha HOM05D005277 ORTHO05D006319 9.7e-24 113.2 81 63.0
Pp3c7_13700 Physcomitrium patens HOM05D005277 ORTHO05D006319 9.7e-24 113.2 84 60.7
unitig_0.g2484 Utricularia gibba HOM05D002154 ORTHO05D002362 2.2e-23 112.1 62 83.9
Atru.chr5.442 Acer truncatum HOM05D005277 ORTHO05D006319 4.8e-23 110.9 62 80.6
ATR0721G079 Amborella trichopoda HOM05D005277 ORTHO05D006319 4.8e-23 110.9 59 79.7
ATR0763G077 Amborella trichopoda HOM05D005277 ORTHO05D006319 4.8e-23 110.9 58 81.0
RcHm_v2.0_Chr0c39g0503241 Rosa chinensis HOM05D005277 ORTHO05D006319 8.3e-23 110.2 59 86.4
RcHm_v2.0_Chr1g0353201 Rosa chinensis HOM05D005277 ORTHO05D006319 8.3e-23 110.2 59 86.4
Sp7g35520 Schrenkiella parvula HOM05D002845 ORTHO05D006319 1.1e-22 109.8 59 84.7
Cpa.g.c32742 Carica papaya HOM05D005277 ORTHO05D006319 1.8e-22 109.0 60 80.0
ATR0174G019 Amborella trichopoda HOM05D005277 ORTHO05D006319 2.7e-21 105.1 58 77.6
HPP92_028083 Vanilla planifolia HOM05D005277 ORTHO05D006319 2.7e-21 105.1 66 74.2
Zm00001eb320330 Zea mays HOM05D005277 ORTHO05D006319 3.5e-21 104.8 58 84.5
Nitab4.5_0008315g0010 Nicotiana tabacum HOM05D005277 ORTHO05D006319 1.0e-20 103.2 62 72.6
SHI13469 Sapria himalayana HOM05D005277 ORTHO05D006319 1.0e-20 103.2 60 80.0
BcaNung05359 Brassica carinata HOM05D005277 ORTHO05D006319 1.7e-20 102.4 51 86.3
SMO203G0011 Selaginella moellendorffii HOM05D005277 ORTHO05D006319 1.7e-20 102.4 61 67.2
Ah.05g176400 Amaranthus hybridus HOM05D005277 ORTHO05D006319 2.2e-20 102.1 60 71.7
C09p00490 Brassica napus HOM05D005277 ORTHO05D006319 2.2e-20 102.1 61 78.7
BraA09t35720Z Brassica rapa HOM05D005277 ORTHO05D006319 8.5e-20 100.1 60 78.3
BolC9t52983H Brassica oleracea HOM05D005277 ORTHO05D006319 1.5e-19 99.4 61 78.7
CSS0022794 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 2.5e-19 98.6 62 77.4
CSS0038928 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 2.6e-16 88.6 62 69.4
FAN10G1490 Fragaria x ananassa HOM05D005277 ORTHO05D006319 2.2e-15 85.5 39 92.3
PRCOL_00003506 Prasinoderma coloniale HOM05D005277 ORTHO05D006319 2.4e-14 82.0 65 55.4
AagrBONN_evm.TU.Sc2ySwM_369.4 Anthoceros agrestis HOM05D005277 ORTHO05D006319 3.1e-14 81.6 76 52.6
MCO13G435 Micromonas commoda HOM05D005277 ORTHO05D006319 6.6e-12 73.9 63 55.6


User provided reference genes

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