Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g01375 Nelumbo nucifera HOM05D005649 ORTHO05D006837 2.5e-68 261.9 129 100.0
Nn8g41026 Nelumbo nucifera HOM05D005649 ORTHO05D006837 8.8e-29 130.6 97 66.0
TAR629G2474 Trochodendron aralioides HOM05D005649 ORTHO05D006837 7.0e-26 120.9 97 61.9
Ciclev10006307m.g Citrus clementina HOM05D005649 ORTHO05D006837 1.4e-21 106.7 97 52.6
Sabra15G0150200 Salix brachista HOM05D005649 ORTHO05D006837 3.0e-21 105.5 88 60.2
Potri.012G137400 Populus trichocarpa HOM05D005649 ORTHO05D006837 8.9e-21 104.0 92 58.7
Potri.015G139100 Populus trichocarpa HOM05D005649 ORTHO05D006837 1.5e-20 103.2 91 58.2
CSS0017664 Camellia sinensis var. sinensis HOM05D005649 ORTHO05D006837 2.6e-20 102.4 99 51.5
Manes.14G028300 Manihot esculenta HOM05D005649 ORTHO05D006837 2.6e-20 102.4 97 50.5
Hma1.2p1_1323F.1_g275520 Hydrangea macrophylla HOM05D005649 ORTHO05D006837 3.4e-20 102.1 125 44.0
TAR636G3290 Trochodendron aralioides HOM05D000087 ORTHO05D000439 2.2e-19 99.4 101 54.5
Haze_13744 Corylus avellana HOM05D005649 ORTHO05D006837 2.4e-18 95.9 99 49.5
Gohir.A11G009800 Gossypium hirsutum HOM05D005649 ORTHO05D006837 3.2e-18 95.5 100 50.0
Gohir.D11G009100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 3.2e-18 95.5 100 50.0
Gorai.007G010700 Gossypium raimondii HOM05D005649 ORTHO05D006837 3.2e-18 95.5 100 50.0
Gohir.D09G040900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 4.1e-18 95.1 95 51.6
Atru.chr1.509 Acer truncatum HOM05D005649 ORTHO05D006837 5.4e-18 94.7 101 50.5
CiPaw.03G103300 Carya illinoinensis HOM05D005649 ORTHO05D006837 2.0e-17 92.8 98 51.0
TWI63G0636 Tripterygium wilfordii HOM05D005649 ORTHO05D006837 3.5e-17 92.0 84 50.0
Duzib084G1193 Durio zibethinus HOM05D005649 ORTHO05D006837 5.9e-17 91.3 98 48.0
HPP92_025495 Vanilla planifolia HOM05D005649 ORTHO05D006837 1.0e-16 90.5 84 52.4
Gohir.A12G260100 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.7e-16 89.7 99 50.5
Gohir.D12G260900 Gossypium hirsutum HOM05D005649 ORTHO05D006837 1.7e-16 89.7 99 50.5
Gorai.008G279600 Gossypium raimondii HOM05D005649 ORTHO05D006837 1.7e-16 89.7 99 50.5
Actinidia03109 Actinidia chinensis HOM05D005649 ORTHO05D006837 3.0e-16 89.0 99 45.5
Prupe.2G290900 Prunus persica HOM05D005649 ORTHO05D006837 3.9e-16 88.6 88 48.9
Dinv35188 Davidia involucrata HOM05D005649 ORTHO05D006837 5.0e-16 88.2 100 44.0
Thecc.03G171600 Theobroma cacao HOM05D005649 ORTHO05D006837 5.0e-16 88.2 100 49.0
Duzib068G0970 Durio zibethinus HOM05D005649 ORTHO05D006837 6.6e-16 87.8 100 50.0
Aqoxy7G00428 Aquilegia oxysepala HOM05D005649 ORTHO05D006837 1.1e-15 87.0 88 50.0
PSO478G4859 Papaver somniferum HOM05D005649 ORTHO05D006837 1.5e-15 86.7 84 48.8
CiPaw.04G066700 Carya illinoinensis HOM05D005649 ORTHO05D006837 1.9e-15 86.3 95 51.6
Nitab4.5_0002107g0070 Nicotiana tabacum HOM05D005649 ORTHO05D006837 2.5e-15 85.9 83 51.8
SGA_v2.0_scaffold10G05368 Striga asiatica HOM05D005649 ORTHO05D006837 2.5e-15 85.9 86 47.7
HPP92_025369 Vanilla planifolia HOM05D005649 ORTHO05D006837 3.3e-15 85.5 66 56.1
Actinidia34088 Actinidia chinensis HOM05D005649 ORTHO05D006837 4.3e-15 85.1 109 45.0
QL09p014765 Quercus lobata HOM05D005649 ORTHO05D006837 5.6e-15 84.7 97 45.4
CDE11G0782 Ceratophyllum demersum HOM05D005649 ORTHO05D006837 7.3e-15 84.3 67 59.7
PSO782G3448 Papaver somniferum HOM05D005649 ORTHO05D006837 7.3e-15 84.3 84 47.6
Lalb_Chr19g0130991 Lupinus albus HOM05D005649 ORTHO05D006837 1.2e-14 83.6 110 43.6
Cc02_g03310 Coffea canephora HOM05D005649 ORTHO05D006837 1.6e-14 83.2 99 45.5
Migut.F00365 Erythranthe guttata HOM05D005649 ORTHO05D006837 1.6e-14 83.2 88 47.7
Lj2g0004156 Lotus japonicus HOM05D005649 ORTHO05D006837 1.6e-14 83.2 86 52.3
Lalb_Chr01g0009161 Lupinus albus HOM05D005649 ORTHO05D006837 1.6e-14 83.2 101 47.5
Cpa.g.sc107.18 Carica papaya HOM05D005649 ORTHO05D006837 2.1e-14 82.8 84 45.2
PGSC0003DMG400004517 Solanum tuberosum HOM05D000087 ORTHO05D000439 3.6e-14 82.0 71 49.3
MELO3C006883.2 Cucumis melo HOM05D005649 ORTHO05D006837 4.7e-14 81.6 97 45.4
CAN.G28.8 Capsicum annuum HOM05D005649 ORTHO05D006837 6.2e-14 81.3 84 42.9
Lsat_1_v5_gn_2_132960 Lactuca sativa HOM05D005649 ORTHO05D006837 6.2e-14 81.3 86 47.7
EL10Ac3g05710 Beta vulgaris HOM05D005649 ORTHO05D006837 8.0e-14 80.9 87 46.0
Glyma.09G144000 Glycine max HOM05D005649 ORTHO05D006837 1.1e-13 80.5 82 46.3
ATR0757G068 Amborella trichopoda HOM05D005649 ORTHO05D006837 1.4e-13 80.1 83 50.6
Phvul.004G120100 Phaseolus vulgaris HOM05D005649 ORTHO05D006837 2.3e-13 79.3 90 46.7
RcHm_v2.0_Chr1g0376811 Rosa chinensis HOM05D005649 ORTHO05D006837 2.3e-13 79.3 104 41.3
CAN.G769.4 Capsicum annuum HOM05D005649 ORTHO05D006837 3.1e-13 79.0 85 45.9
PGR042G0682 Punica granatum HOM05D005649 ORTHO05D006837 3.1e-13 79.0 83 47.0
Glyma.16G197100 Glycine max HOM05D005649 ORTHO05D006837 4.0e-13 78.6 83 44.6
Peaxi162Scf00040g00425 Petunia axillaris HOM05D005649 ORTHO05D006837 4.0e-13 78.6 82 45.1
COL.COLO4_14273 Corchorus olitorius HOM05D005649 ORTHO05D006837 5.2e-13 78.2 97 42.3
CsaV3_3G016880 Cucumis sativus L. HOM05D005649 ORTHO05D006837 5.2e-13 78.2 97 43.3
Oeu062770.1 Olea europaea HOM05D005649 ORTHO05D006837 5.2e-13 78.2 83 45.8
Solyc03g026115.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 5.2e-13 78.2 94 45.7
TPR.G17428 Trifolium pratense HOM05D005649 ORTHO05D006837 5.2e-13 78.2 93 48.4
Migut.F01138 Erythranthe guttata HOM05D005649 ORTHO05D006837 6.8e-13 77.8 86 47.7
Nitab4.5_0004480g0060 Nicotiana tabacum HOM05D005649 ORTHO05D006837 6.8e-13 77.8 109 38.5
Sc13g0008480 Simmondsia chinensis HOM05D005649 ORTHO05D006837 6.8e-13 77.8 85 44.7
Solyc06g035820.1 Solanum lycopersicum HOM05D005649 ORTHO05D006837 6.8e-13 77.8 89 40.4
Psat0s6119g0040 Pisum sativum HOM05D005649 ORTHO05D006837 8.9e-13 77.4 84 48.8
DCAR_018179 Daucus carota HOM05D005649 ORTHO05D006837 1.2e-12 77.0 95 40.0
HanXRQChr14g0462161 Helianthus annuus HOM05D005649 ORTHO05D006837 1.2e-12 77.0 86 47.7
DCAR_018177 Daucus carota HOM05D005649 ORTHO05D006837 1.5e-12 76.6 95 40.0
SalBow6G0552 Salvia bowleyana HOM05D000001 ORTHO05D010467 1.5e-12 76.6 64 51.6
MD01G1197500 Malus domestica HOM05D005649 ORTHO05D006837 2.0e-12 76.3 88 45.5
Medtr1g101360 Medicago truncatula HOM05D005649 ORTHO05D006837 2.0e-12 76.3 86 48.8
SalBow6G6599 Salvia bowleyana HOM05D000001 ORTHO05D010467 2.0e-12 76.3 64 50.0
AUR62021224 Chenopodium quinoa HOM05D005649 ORTHO05D006837 3.4e-12 75.5 90 43.3
PSO782G2995 Papaver somniferum HOM05D005649 ORTHO05D006837 3.4e-12 75.5 85 43.5
SalBow2G3129 Salvia bowleyana HOM05D005649 ORTHO05D006837 3.4e-12 75.5 85 42.4
Solyc01g009590.3 Solanum lycopersicum HOM05D005649 ORTHO05D006837 7.5e-12 74.3 65 46.2
Sopen01g005120 Solanum pennellii HOM05D005649 ORTHO05D006837 7.5e-12 74.3 65 46.2
Sed0000609 Sechium edule HOM05D005649 ORTHO05D006837 9.8e-12 73.9 87 44.8
Eucgr.K00231 Eucalyptus grandis HOM05D005649 ORTHO05D006837 1.3e-11 73.6 89 40.4
Sed0025700 Sechium edule HOM05D005649 ORTHO05D006837 1.7e-11 73.2 97 44.3
AUR62016019 Chenopodium quinoa HOM05D005649 ORTHO05D006837 3.7e-11 72.0 90 41.1
CAN.G166.5 Capsicum annuum HOM05D005649 ORTHO05D006837 6.4e-11 71.2 80 42.5
Ca_10790_v3 Cicer arietinum L. HOM05D005649 ORTHO05D006837 1.1e-10 70.5 98 40.8
FvH4_7g29091 Fragaria vesca HOM05D005649 ORTHO05D006837 1.1e-10 70.5 100 35.0
FAN03G0279 Fragaria x ananassa HOM05D005649 ORTHO05D006837 1.1e-10 70.5 100 35.0
CARHR265080 Cardamine hirsuta HOM05D005649 ORTHO05D006837 1.4e-10 70.1 86 43.0
AT5G52160 Arabidopsis thaliana HOM05D005649 ORTHO05D006837 2.4e-10 69.3 86 43.0
DCAR_014595 Daucus carota HOM05D005649 ORTHO05D006837 2.4e-10 69.3 91 34.1
AL8G26550 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 4.1e-10 68.6 84 41.7
A10p09850 Brassica napus HOM05D005649 ORTHO05D006837 4.1e-10 68.6 65 47.7
C09p41580 Brassica napus HOM05D005649 ORTHO05D006837 4.1e-10 68.6 65 47.7
BolC9t57041H Brassica oleracea HOM05D005649 ORTHO05D006837 4.1e-10 68.6 65 47.7
BraA10t43066Z Brassica rapa HOM05D005649 ORTHO05D006837 4.1e-10 68.6 65 47.7
Ah.07g209060 Amaranthus hybridus HOM05D005649 ORTHO05D006837 7.0e-10 67.8 91 38.5
Carub.0008s1225 Capsella rubella HOM05D005649 ORTHO05D006837 7.0e-10 67.8 65 47.7
CANSAT21G0877 Cannabis sativa HOM05D005649 ORTHO05D006837 9.2e-10 67.4 84 40.5
THA.LOC109117151 Tarenaya hassleriana HOM05D005649 ORTHO05D006837 9.2e-10 67.4 83 43.4
Peaxi162Scf00132g01516 Petunia axillaris HOM05D005649 ORTHO05D006837 2.0e-09 66.2 88 39.8
Thhalv10015124m.g Eutrema salsugineum HOM05D005649 ORTHO05D006837 2.7e-09 65.9 65 47.7
Os09g0525500 Oryza sativa ssp. japonica HOM05D005649 ORTHO05D006837 2.7e-09 65.9 92 41.3
PSO782G4359 Papaver somniferum HOM05D005649 ORTHO05D006837 2.7e-09 65.9 87 37.9
Aa31LG3G8540 Aethionema arabicum HOM05D005649 ORTHO05D006837 3.5e-09 65.5 79 38.0
Sp6g14410 Schrenkiella parvula HOM05D005649 ORTHO05D006837 3.5e-09 65.5 85 38.8
BcaB08g35564 Brassica carinata HOM05D005649 ORTHO05D006837 4.6e-09 65.1 60 50.0
BcaB01g04189 Brassica carinata HOM05D005649 ORTHO05D006837 6.0e-09 64.7 85 38.8
A03p15810 Brassica napus HOM05D005649 ORTHO05D006837 6.0e-09 64.7 78 41.0
BraA03t10871Z Brassica rapa HOM05D005649 ORTHO05D006837 6.0e-09 64.7 85 38.8
BcaC01g06166 Brassica carinata HOM05D005649 ORTHO05D006837 1.0e-08 63.9 85 38.8
BcaC01g06170 Brassica carinata HOM05D005649 ORTHO05D006837 1.0e-08 63.9 85 38.8
C03p18480 Brassica napus HOM05D005649 ORTHO05D006837 1.0e-08 63.9 65 44.6
BolC3t14245H Brassica oleracea HOM05D005649 ORTHO05D006837 1.0e-08 63.9 85 38.8
FAN03G1726 Fragaria x ananassa HOM05D005649 ORTHO05D006837 3.9e-08 62.0 56 46.4
Sp2g25250 Schrenkiella parvula HOM05D005649 ORTHO05D006837 1.5e-07 60.1 97 33.0
AL6G17460 Arabidopsis lyrata HOM05D005649 ORTHO05D006837 1.9e-07 59.7 91 39.6
C09p69350 Brassica napus HOM05D005649 ORTHO05D006837 3.3e-07 58.9 84 34.5
BolC9t59679H Brassica oleracea HOM05D005649 ORTHO05D006837 3.3e-07 58.9 84 34.5
Carub.0006s0617 Capsella rubella HOM05D005649 ORTHO05D006837 3.3e-07 58.9 67 38.8
A10p28990 Brassica napus HOM05D005649 ORTHO05D006837 7.3e-07 57.8 84 33.3
CARHR205910 Cardamine hirsuta HOM05D005649 ORTHO05D006837 7.3e-07 57.8 83 37.3
SEGI_28530 Sequoiadendron giganteum HOM05D005649 ORTHO05D006837 7.3e-07 57.8 86 32.6
Os08g0546300 Oryza sativa ssp. japonica HOM05D005649 ORTHO05D006837 1.2e-06 57.0 63 38.1
BcaC06g32460 Brassica carinata HOM05D005649 ORTHO05D006837 1.6e-06 56.6 82 36.6
BraA10t44947Z Brassica rapa HOM05D005649 ORTHO05D006837 1.6e-06 56.6 82 32.9
SEGI_28459 Sequoiadendron giganteum HOM05D005649 ORTHO05D006837 8.1e-06 54.3 81 33.3


User provided reference genes

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