Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g01350 Nelumbo nucifera HOM05D006418 ORTHO05D008063 1.0e-198 696.4 332 100.0
TAR375G0873 Trochodendron aralioides HOM05D006418 ORTHO05D008063 1.8e-174 615.9 332 87.0
Aqoxy5G03975 Aquilegia oxysepala HOM05D006418 ORTHO05D008063 1.4e-166 589.7 333 83.2
Duzib138G1515 Durio zibethinus HOM05D006418 ORTHO05D008063 9.8e-165 583.6 333 82.9
CANSAT56G2190 Cannabis sativa HOM05D006418 ORTHO05D008063 1.3e-164 583.2 334 81.4
MD07G1128500 Malus domestica HOM05D006418 ORTHO05D008063 2.9e-164 582.0 335 82.7
GSVIVG01027527001 Vitis vinifera HOM05D006418 ORTHO05D008063 1.4e-163 579.7 327 83.2
Actinidia38288 Actinidia chinensis HOM05D006418 ORTHO05D008063 2.0e-162 575.9 331 81.9
FvH4_7g13130 Fragaria vesca HOM05D006418 ORTHO05D008063 2.7e-162 575.5 333 81.7
FAN06G0540 Fragaria x ananassa HOM05D006418 ORTHO05D008063 2.7e-162 575.5 333 81.7
FAN06G3976 Fragaria x ananassa HOM05D006418 ORTHO05D008063 2.7e-162 575.5 333 81.7
Gorai.007G095100 Gossypium raimondii HOM05D006418 ORTHO05D008063 7.8e-162 573.9 333 81.1
FAN10G2923 Fragaria x ananassa HOM05D006418 ORTHO05D008063 1.3e-161 573.2 333 81.4
FAN01G2003 Fragaria x ananassa HOM05D006418 ORTHO05D008063 2.3e-161 572.4 333 80.8
CiPaw.01G053600 Carya illinoinensis HOM05D006418 ORTHO05D008063 3.9e-161 571.6 333 81.1
RcHm_v2.0_Chr1g0352261 Rosa chinensis HOM05D006418 ORTHO05D008063 3.9e-161 571.6 333 81.7
FAN03G2411 Fragaria x ananassa HOM05D006418 ORTHO05D008063 5.0e-161 571.2 333 81.1
Gohir.D11G089100 Gossypium hirsutum HOM05D006418 ORTHO05D008063 6.6e-161 570.9 333 80.8
COL.COLO4_12625 Corchorus olitorius HOM05D006418 ORTHO05D008063 1.5e-160 569.7 333 80.2
Eucgr.E00217 Eucalyptus grandis HOM05D006418 ORTHO05D008063 1.2e-159 566.6 334 79.3
Ciclev10021113m.g Citrus clementina HOM05D006418 ORTHO05D008063 4.7e-159 564.7 330 80.3
Glyma.03G017600 Glycine max HOM05D006418 ORTHO05D008063 1.8e-158 562.8 331 80.4
Nitab4.5_0010430g0060 Nicotiana tabacum HOM05D006418 ORTHO05D008063 2.3e-158 562.4 337 78.3
Dinv32422 Davidia involucrata HOM05D006418 ORTHO05D008063 3.1e-158 562.0 295 88.1
Rhsim07G0021100 Rhododendron simsii HOM05D006418 ORTHO05D008063 6.8e-158 560.8 333 79.0
Sabra02G0121400 Salix brachista HOM05D006418 ORTHO05D008063 6.8e-158 560.8 330 78.5
Potri.002G153100 Populus trichocarpa HOM05D006418 ORTHO05D008063 1.2e-157 560.1 328 79.9
TPR.G17586 Trifolium pratense HOM05D006418 ORTHO05D008063 3.4e-157 558.5 330 80.3
Lj3g0006580 Lotus japonicus HOM05D006418 ORTHO05D008063 4.4e-157 558.1 325 80.0
TWI59G1449 Tripterygium wilfordii HOM05D006418 ORTHO05D008063 9.9e-157 557.0 313 83.1
Cc02_g37230 Coffea canephora HOM05D006418 ORTHO05D008063 1.7e-156 556.2 336 78.0
CSS0035566 Camellia sinensis var. sinensis HOM05D006418 ORTHO05D008063 3.7e-156 555.1 298 84.6
Hma1.2p1_0033F.1_g020630 Hydrangea macrophylla HOM05D006418 ORTHO05D008063 4.9e-156 554.7 297 85.9
ClCG05G001910 Citrullus lanatus HOM05D006418 ORTHO05D008063 8.3e-156 553.9 301 84.4
arahy.Tifrunner.gnm1.ann1.K1NG1D Arachis hypogaea HOM05D006418 ORTHO05D008063 1.1e-155 553.5 333 78.4
PGSC0003DMG400017054 Solanum tuberosum HOM05D006418 ORTHO05D008063 1.4e-155 553.1 335 77.9
vmacro13338 Vaccinium macrocarpon HOM05D006418 ORTHO05D008063 1.4e-155 553.1 298 84.6
Hund27325 Selenicereus undatus HOM05D006418 ORTHO05D008063 5.4e-155 551.2 328 77.7
Cfa004182 Carpinus fangiana HOM05D006418 ORTHO05D008063 1.2e-154 550.1 295 85.4
HanXRQChr06g0169031 Helianthus annuus HOM05D006418 ORTHO05D008063 1.2e-154 550.1 333 77.8
Peaxi162Scf00021g00525 Petunia axillaris HOM05D006418 ORTHO05D008063 1.6e-154 549.7 316 80.7
THA.LOC104827683 Tarenaya hassleriana HOM05D006418 ORTHO05D008063 1.6e-154 549.7 332 76.8
CiPaw.01G023800 Carya illinoinensis HOM05D006418 ORTHO05D008063 2.1e-154 549.3 335 78.2
Lalb_Chr10g0097531 Lupinus albus HOM05D006418 ORTHO05D008063 2.7e-154 548.9 332 77.4
Lj7A519G38 Lonicera japonica HOM05D006418 ORTHO05D008063 3.5e-154 548.5 298 84.9
Sopen01g037560 Solanum pennellii HOM05D006418 ORTHO05D008063 4.6e-154 548.1 305 82.0
DCAR_025170 Daucus carota HOM05D006418 ORTHO05D008063 2.3e-153 545.8 303 84.8
Solyc01g091780.4 Solanum lycopersicum HOM05D006418 ORTHO05D008063 2.3e-153 545.8 305 81.6
CAN.G170.50 Capsicum annuum HOM05D006418 ORTHO05D008063 3.0e-153 545.4 328 77.4
EL10Ac1g00963 Beta vulgaris HOM05D006418 ORTHO05D008063 1.5e-152 543.1 324 77.5
VMungo0331G0376 Vigna mungo HOM05D006418 ORTHO05D008063 2.5e-152 542.3 324 78.7
ECA236G1148 Erigeron canadensis HOM05D006418 ORTHO05D008063 3.3e-152 542.0 298 83.6
Migut.B01688 Erythranthe guttata HOM05D006418 ORTHO05D008063 4.3e-152 541.6 331 77.9
Nitab4.5_0004550g0130 Nicotiana tabacum HOM05D006418 ORTHO05D008063 4.3e-152 541.6 347 74.6
PGR042G1311 Punica granatum HOM05D006418 ORTHO05D008063 7.3e-152 540.8 324 79.6
Aa31LG10G15180 Aethionema arabicum HOM05D006418 ORTHO05D008063 2.1e-151 539.3 327 77.4
PSO063G7157 Papaver somniferum HOM05D006418 ORTHO05D008063 2.1e-151 539.3 321 79.8
Ca_23755_v3 Cicer arietinum L. HOM05D006418 ORTHO05D008063 4.7e-151 538.1 324 78.1
ATR0757G200 Amborella trichopoda HOM05D006418 ORTHO05D008063 2.3e-150 535.8 317 78.5
Thhalv10006098m.g Eutrema salsugineum HOM05D006418 ORTHO05D008063 2.3e-150 535.8 329 76.9
Phvul.010G092700 Phaseolus vulgaris HOM05D006418 ORTHO05D008063 5.2e-150 534.6 327 77.1
Medtr8g032700 Medicago truncatula HOM05D006418 ORTHO05D008063 8.9e-150 533.9 302 82.5
AL5G43290 Arabidopsis lyrata HOM05D006418 ORTHO05D008063 2.6e-149 532.3 329 75.7
AT3G61080 Arabidopsis thaliana HOM05D006418 ORTHO05D008063 1.3e-148 530.0 329 76.0
Carub.0005s2773 Capsella rubella HOM05D006418 ORTHO05D008063 6.4e-148 527.7 329 75.7
Sp5g02280 Schrenkiella parvula HOM05D006418 ORTHO05D008063 8.4e-148 527.3 329 75.4
MELO3C006151.2 Cucumis melo HOM05D006418 ORTHO05D008063 2.4e-147 525.8 374 70.3
CARHR171390 Cardamine hirsuta HOM05D006418 ORTHO05D008063 4.1e-147 525.0 328 75.3
Os03g0117800 Oryza sativa ssp. japonica HOM05D006418 ORTHO05D008063 4.1e-147 525.0 299 80.9
Zm00001eb001200 Zea mays HOM05D006418 ORTHO05D008063 2.1e-146 522.7 300 80.0
HPP92_014577 Vanilla planifolia HOM05D006418 ORTHO05D008063 1.5e-144 516.5 295 79.7
BcaC08g45098 Brassica carinata HOM05D006418 ORTHO05D008063 3.3e-144 515.4 328 75.0
BcaB02g07390 Brassica carinata HOM05D006418 ORTHO05D008063 4.3e-144 515.0 327 75.2
A07p25300 Brassica napus HOM05D006418 ORTHO05D008063 4.3e-144 515.0 335 74.3
SalBow3G2367 Salvia bowleyana HOM05D006418 ORTHO05D008063 9.6e-144 513.8 332 75.3
BraA07t30173Z Brassica rapa HOM05D006418 ORTHO05D008063 1.4e-142 510.0 335 73.1
C06p27060 Brassica napus HOM05D006418 ORTHO05D008063 4.0e-142 508.4 335 73.4
BolC6t37878H Brassica oleracea HOM05D006418 ORTHO05D008063 4.0e-142 508.4 335 73.4
Thecc.01G368600 Theobroma cacao HOM05D006418 ORTHO05D008063 9.0e-134 480.7 290 78.6
Manes.01G262400 Manihot esculenta HOM05D006418 ORTHO05D008063 7.6e-133 477.6 284 78.5
Atru.chr5.403 Acer truncatum HOM05D006418 ORTHO05D008063 3.8e-132 475.3 280 80.7
CDE01G0065 Ceratophyllum demersum HOM05D006418 ORTHO05D008063 4.6e-130 468.4 299 75.3
Prupe.2G154600 Prunus persica HOM05D006418 ORTHO05D008063 4.3e-128 461.8 241 88.0
SGA_v2.0_scaffold95G28870 Striga asiatica HOM05D006418 ORTHO05D008063 3.7e-127 458.8 331 70.1
CsaV3_3G009310 Cucumis sativus L. HOM05D006418 ORTHO05D008063 1.1e-126 457.2 241 87.1
Psat4g151800 Pisum sativum HOM05D006418 ORTHO05D008063 3.4e-125 452.2 275 77.1
Lsat_1_v5_gn_7_8501 Lactuca sativa HOM05D006418 ORTHO05D008063 2.2e-124 449.5 263 80.6
QL08p050652 Quercus lobata HOM05D006418 ORTHO05D008063 1.6e-122 443.4 261 80.5
AUR62004291 Chenopodium quinoa HOM05D006418 ORTHO05D008063 1.3e-121 440.3 250 78.8
Sed0024588 Sechium edule HOM05D006418 ORTHO05D008063 1.3e-121 440.3 241 84.2
Mapoly0138s0005 Marchantia polymorpha HOM05D006418 ORTHO05D008063 7.4e-120 434.5 327 62.1
Oeu024416.1 Olea europaea HOM05D006418 ORTHO05D008063 7.4e-120 434.5 292 71.6
CBR_g38943 Chara braunii HOM05D006418 ORTHO05D008063 1.2e-117 427.2 292 66.1
AagrBONN_evm.TU.Sc2ySwM_344.2134 Anthoceros agrestis HOM05D006418 ORTHO05D008063 2.6e-117 426.0 293 66.2
Pp3c15_5030 Physcomitrium patens HOM05D006418 ORTHO05D008063 8.4e-116 421.0 293 65.2
Cpa.g.sc18.197 Carica papaya HOM05D006418 ORTHO05D008063 1.0e-113 414.1 253 77.1
SMO356G0133 Selaginella moellendorffii HOM05D006418 ORTHO05D008063 1.7e-108 396.7 291 62.9
MBI12_g25033_MAGBIO Magnolia biondii HOM05D006418 ORTHO05D008063 1.2e-101 374.0 258 72.1
unitig_22.g5367 Utricularia gibba HOM05D006418 ORTHO05D008063 7.7e-101 371.3 204 81.9
Cc02_g37660 Coffea canephora HOM05D006418 ORTHO05D008063 7.9e-98 361.3 208 79.8
Gohir.A11G085000 Gossypium hirsutum HOM05D006418 ORTHO05D008063 2.0e-96 356.7 182 87.4
Hma1.2p1_0033F.1_g020640 Hydrangea macrophylla HOM05D006418 ORTHO05D008063 7.2e-91 338.2 256 66.8
SEGI_14549 Sequoiadendron giganteum HOM05D006418 ORTHO05D008063 3.4e-72 276.2 170 74.1
MCO14G366 Micromonas commoda HOM05D006418 ORTHO05D008063 3.5e-69 266.2 297 47.8
Cre12.g542202 Chlamydomonas reinhardtii HOM05D006418 ORTHO05D008063 3.3e-67 259.6 286 47.6
Sc26g0001060 Simmondsia chinensis HOM05D001335 ORTHO05D001184 8.0e-66 255.0 201 64.2
FAN10G0301 Fragaria x ananassa HOM05D006418 ORTHO05D008063 5.7e-64 248.8 202 62.9
arahy.Tifrunner.gnm1.ann1.N7AMXP Arachis hypogaea HOM05D006418 ORTHO05D008063 1.6e-61 240.7 171 69.6
Haze_15226 Corylus avellana HOM05D006418 ORTHO05D008063 2.3e-60 236.9 136 80.1
PRCOL_00000121 Prasinoderma coloniale HOM05D006418 ORTHO05D008063 1.9e-54 217.2 269 45.4
Sabra14G0055300 Salix brachista HOM05D006418 ORTHO05D008063 3.6e-50 203.0 284 42.6
Gohir.A11G084900 Gossypium hirsutum HOM05D006418 ORTHO05D008063 4.0e-49 199.5 133 73.7
Glyma.07G078900 Glycine max HOM05D006418 ORTHO05D008063 2.4e-46 190.3 184 57.6
Pp3c1_6480 Physcomitrium patens HOM05D006418 ORTHO05D008063 8.6e-44 181.8 277 37.9
Sc26g0001070 Simmondsia chinensis HOM05D006418 ORTHO05D008063 4.3e-43 179.5 160 60.0
Ca_28970_v3 Cicer arietinum L. HOM05D006418 ORTHO05D008063 1.4e-33 147.9 280 34.6
ATR0620G127 Amborella trichopoda HOM05D006418 ORTHO05D008063 2.4e-30 137.1 157 45.9
Cfa024407 Carpinus fangiana HOM05D006418 ORTHO05D008063 2.4e-30 137.1 349 30.7
unitig_22.g5366 Utricularia gibba HOM05D003447 ORTHO05D003967 4.4e-24 116.3 97 59.8
CiPaw.01G052800 Carya illinoinensis HOM05D006418 ORTHO05D008063 9.9e-24 115.2 87 64.4
Cc00_g22860 Coffea canephora HOM05D006418 ORTHO05D008063 9.0e-17 92.0 57 73.7
Actinidia27830 Actinidia chinensis HOM05D006418 ORTHO05D008063 1.8e-12 77.8 41 80.5
MBI16_g15528_MAGBIO Magnolia biondii HOM05D006418 ORTHO05D008063 6.7e-12 75.9 42 83.3
SEGI_36912 Sequoiadendron giganteum HOM05D006418 ORTHO05D008063 7.4e-11 72.4 55 58.2
MBI11_g05318_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D000669 1.7e-07 61.2 30 93.3
SEGI_18314 Sequoiadendron giganteum HOM05D006418 ORTHO05D008063 9.3e-06 55.5 68 42.6


User provided reference genes

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