Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g01315 Nelumbo nucifera HOM05D000170 ORTHO05D007205 4.8e-20 100.1 48 100.0
Nn6g35184 Nelumbo nucifera HOM05D000170 ORTHO05D007205 6.0e-15 83.2 46 89.1
Nn4g24441 Nelumbo nucifera HOM05D000170 ORTHO05D007205 9.6e-13 75.9 46 80.4
Nitab4.5_0000725g0060 Nicotiana tabacum HOM05D000170 ORTHO05D007205 1.3e-12 75.5 46 71.7
PGSC0003DMG400008591 Solanum tuberosum HOM05D000170 ORTHO05D007205 1.8e-11 71.6 46 67.4
Aa31LG10G8310 Aethionema arabicum HOM05D000170 ORTHO05D007205 2.4e-11 71.2 49 69.4
Aqoxy1G01045 Aquilegia oxysepala HOM05D000170 ORTHO05D007205 3.1e-11 70.9 46 76.1
Manes.08G016400 Manihot esculenta HOM05D000170 ORTHO05D007205 3.1e-11 70.9 46 73.9
Thhalv10010488m.g Eutrema salsugineum HOM05D000170 ORTHO05D007205 5.3e-11 70.1 46 73.9
Atru.chr8.1713 Acer truncatum HOM05D000170 ORTHO05D007205 9.0e-11 69.3 46 73.9
Sed0014983 Sechium edule HOM05D000170 ORTHO05D007205 1.5e-10 68.6 46 63.0
Sopen10g035230 Solanum pennellii HOM05D000170 ORTHO05D007205 1.5e-10 68.6 46 63.0
BcaB01g00314 Brassica carinata HOM05D000170 ORTHO05D007205 2.0e-10 68.2 49 67.3
CiPaw.09G004600 Carya illinoinensis HOM05D000170 ORTHO05D007205 2.0e-10 68.2 48 72.9
MELO3C009403.2 Cucumis melo HOM05D000170 ORTHO05D007205 2.0e-10 68.2 46 65.2
CsaV3_3G036520 Cucumis sativus L. HOM05D000170 ORTHO05D007205 2.0e-10 68.2 46 65.2
Duzib093G0643 Durio zibethinus HOM05D000170 ORTHO05D007205 2.0e-10 68.2 47 72.3
FAN02G3292 Fragaria x ananassa HOM05D000170 ORTHO05D007205 2.0e-10 68.2 46 67.4
FAN05G1040 Fragaria x ananassa HOM05D000170 ORTHO05D007205 2.0e-10 68.2 46 67.4
FAN05G4883 Fragaria x ananassa HOM05D000170 ORTHO05D007205 2.0e-10 68.2 46 67.4
FAN14G2479 Fragaria x ananassa HOM05D000170 ORTHO05D007205 2.0e-10 68.2 46 67.4
CAN.G729.7 Capsicum annuum HOM05D000170 ORTHO05D007205 2.6e-10 67.8 46 63.0
CARHR162990 Cardamine hirsuta HOM05D000170 ORTHO05D007205 2.6e-10 67.8 46 73.9
RcHm_v2.0_Chr3g0471211 Rosa chinensis HOM05D000170 ORTHO05D007205 2.6e-10 67.8 46 67.4
Sabra06G0094400 Salix brachista HOM05D000170 ORTHO05D007205 2.6e-10 67.8 53 66.0
Sopen10g035240 Solanum pennellii HOM05D000170 ORTHO05D007205 2.6e-10 67.8 46 63.0
Actinidia29541 Actinidia chinensis HOM05D000170 ORTHO05D007205 3.4e-10 67.4 46 69.6
Carub.0005s1967 Capsella rubella HOM05D000170 ORTHO05D007205 3.4e-10 67.4 46 69.6
COL.COLO4_22244 Corchorus olitorius HOM05D000170 ORTHO05D007205 3.4e-10 67.4 47 70.2
TWI53G1443 Tripterygium wilfordii HOM05D000170 ORTHO05D007205 3.4e-10 67.4 46 71.7
PSO063G2881 Papaver somniferum HOM05D000170 ORTHO05D007205 4.5e-10 67.0 50 64.0
QL07p041523 Quercus lobata HOM05D000170 ORTHO05D007205 4.5e-10 67.0 50 66.0
THA.LOC104818584 Tarenaya hassleriana HOM05D000170 ORTHO05D007205 4.5e-10 67.0 46 69.6
TAR636G2091 Trochodendron aralioides HOM05D000170 ORTHO05D007205 4.5e-10 67.0 46 73.9
ClCG10G019690 Citrullus lanatus HOM05D000170 ORTHO05D007205 7.6e-10 66.2 46 63.0
Thhalv10023542m.g Eutrema salsugineum HOM05D000170 ORTHO05D007205 1.0e-09 65.9 48 70.8
FvH4_6g17130 Fragaria vesca HOM05D000170 ORTHO05D007205 1.0e-09 65.9 46 65.2
Potri.006G120000 Populus trichocarpa HOM05D000170 ORTHO05D007205 1.0e-09 65.9 53 64.2
Sc02g0001380 Simmondsia chinensis HOM05D000170 ORTHO05D007205 1.0e-09 65.9 46 63.0
AL5G34020 Arabidopsis lyrata HOM05D000170 ORTHO05D007205 1.3e-09 65.5 46 71.7
AT3G53140 Arabidopsis thaliana HOM05D000170 ORTHO05D007205 1.3e-09 65.5 46 71.7
Ca_03451_v3 Cicer arietinum L. HOM05D000170 ORTHO05D007205 1.7e-09 65.1 46 65.2
Sp5g09180 Schrenkiella parvula HOM05D000170 ORTHO05D007205 1.7e-09 65.1 46 67.4
VMungo1080G0369 Vigna mungo HOM05D000170 ORTHO05D007205 1.7e-09 65.1 46 65.2
BcaB02g08534 Brassica carinata HOM05D000170 ORTHO05D007205 2.2e-09 64.7 46 69.6
Gohir.A04G069100 Gossypium hirsutum HOM05D000170 ORTHO05D007205 2.2e-09 64.7 51 68.6
Gorai.009G411600 Gossypium raimondii HOM05D000170 ORTHO05D007205 2.2e-09 64.7 51 68.6
MBI18_g12594_MAGBIO Magnolia biondii HOM05D000170 ORTHO05D007205 2.2e-09 64.7 47 68.1
MBI18_g37955_MAGBIO Magnolia biondii HOM05D000170 ORTHO05D007205 2.2e-09 64.7 47 68.1
Cpa.g.sc5.132 Carica papaya HOM05D000170 ORTHO05D007205 2.9e-09 64.3 47 68.1
HanXRQChr15g0477651 Helianthus annuus HOM05D000170 ORTHO05D007205 2.9e-09 64.3 46 69.6
Lsat_1_v5_gn_2_19801 Lactuca sativa HOM05D000170 ORTHO05D007205 2.9e-09 64.3 47 68.1
QL07p041500 Quercus lobata HOM05D000170 ORTHO05D007205 2.9e-09 64.3 50 62.0
BcaC02g09181 Brassica carinata HOM05D000170 ORTHO05D007205 3.8e-09 63.9 46 65.2
A04p06250 Brassica napus HOM05D000170 ORTHO05D007205 3.8e-09 63.9 46 65.2
C04p39760 Brassica napus HOM05D000170 ORTHO05D007205 3.8e-09 63.9 46 65.2
BolC4t25548H Brassica oleracea HOM05D000170 ORTHO05D007205 3.8e-09 63.9 46 65.2
BraA04t16330Z Brassica rapa HOM05D000170 ORTHO05D007205 3.8e-09 63.9 46 65.2
Cfa016464 Carpinus fangiana HOM05D000170 ORTHO05D007205 3.8e-09 63.9 46 69.6
Solyc10g085830.2 Solanum lycopersicum HOM05D000170 ORTHO05D007205 4.9e-09 63.5 46 63.0
Ciclev10013655m.g Citrus clementina HOM05D000170 ORTHO05D007205 6.5e-09 63.2 46 69.6
CAN.G729.6 Capsicum annuum HOM05D000170 ORTHO05D007205 8.4e-09 62.8 46 58.7
Ciclev10029876m.g Citrus clementina HOM05D000170 ORTHO05D007205 8.4e-09 62.8 46 69.6
Gohir.D04G107400 Gossypium hirsutum HOM05D000170 ORTHO05D007205 8.4e-09 62.8 51 66.7
Ciclev10010561m.g Citrus clementina HOM05D000170 ORTHO05D007205 1.4e-08 62.0 46 65.2
Prupe.7G123600 Prunus persica HOM05D000170 ORTHO05D007205 1.4e-08 62.0 51 62.7
Glyma.15G241100 Glycine max HOM05D000170 ORTHO05D007205 1.9e-08 61.6 46 65.2
Lalb_Chr25g0285571 Lupinus albus HOM05D000170 ORTHO05D007205 1.9e-08 61.6 46 60.9
Phvul.005G070300 Phaseolus vulgaris HOM05D000170 ORTHO05D007205 1.9e-08 61.6 46 63.0
Thecc.05G074200 Theobroma cacao HOM05D000170 ORTHO05D007205 1.9e-08 61.6 46 60.9
Haze_19465 Corylus avellana HOM05D000170 ORTHO05D007205 2.5e-08 61.2 46 67.4
Psat1g007920 Pisum sativum HOM05D000170 ORTHO05D007205 2.5e-08 61.2 46 63.0
PGR004G2213 Punica granatum HOM05D000170 ORTHO05D007205 2.5e-08 61.2 46 65.2
Glyma.13G263200 Glycine max HOM05D000170 ORTHO05D007205 3.2e-08 60.8 46 63.0
Psat3g060280 Pisum sativum HOM05D000170 ORTHO05D007205 3.2e-08 60.8 46 60.9
TPR.G27302 Trifolium pratense HOM05D000170 ORTHO05D007205 3.2e-08 60.8 46 67.4
Medtr2g072790 Medicago truncatula HOM05D000170 ORTHO05D007205 4.2e-08 60.5 46 63.0
MD14G1097900 Malus domestica HOM05D000170 ORTHO05D007205 5.5e-08 60.1 49 61.2
arahy.Tifrunner.gnm1.ann1.DK6BL4 Arachis hypogaea HOM05D000170 ORTHO05D007205 7.1e-08 59.7 47 61.7
arahy.Tifrunner.gnm1.ann1.F8BKZV Arachis hypogaea HOM05D000170 ORTHO05D007205 7.1e-08 59.7 47 61.7
MD12G1103500 Malus domestica HOM05D000170 ORTHO05D007205 7.1e-08 59.7 49 59.2
Psat3g060200 Pisum sativum HOM05D000170 ORTHO05D007205 7.1e-08 59.7 46 58.7
arahy.Tifrunner.gnm1.ann1.I1E7E1 Arachis hypogaea HOM05D000170 ORTHO05D007205 1.2e-07 58.9 46 58.7
CANSAT78G0870 Cannabis sativa HOM05D000170 ORTHO05D007205 1.2e-07 58.9 46 58.7
arahy.Tifrunner.gnm1.ann1.S7NHY3 Arachis hypogaea HOM05D000170 ORTHO05D007205 1.6e-07 58.5 46 58.7
Ciclev10033543m.g Citrus clementina HOM05D000170 ORTHO05D007205 1.6e-07 58.5 46 65.2
Lj3g0000213 Lotus japonicus HOM05D000170 ORTHO05D007205 1.6e-07 58.5 46 60.9
Nn3g17961 Nelumbo nucifera HOM05D000170 ORTHO05D007205 1.6e-07 58.5 40 67.5
Lalb_Chr08g0238401 Lupinus albus HOM05D000170 ORTHO05D007205 3.5e-07 57.4 46 56.5
Nn1g01182 Nelumbo nucifera HOM05D000170 ORTHO05D007205 6.0e-07 56.6 35 80.0
arahy.Tifrunner.gnm1.ann1.BIS5KZ Arachis hypogaea HOM05D000170 ORTHO05D007205 7.9e-07 56.2 46 56.5
arahy.Tifrunner.gnm1.ann1.D2PEMM Arachis hypogaea HOM05D000170 ORTHO05D007205 7.9e-07 56.2 46 56.5
SEGI_14789 Sequoiadendron giganteum HOM05D000170 ORTHO05D007205 3.0e-06 54.3 49 57.1
CDE06G0899 Ceratophyllum demersum HOM05D000170 ORTHO05D007205 5.1e-06 53.5 46 58.7
Dinv37352 Davidia involucrata HOM05D000170 ORTHO05D007205 8.7e-06 52.8 38 63.2


User provided reference genes

Program Settings