Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g01314 Nelumbo nucifera HOM05D000170 ORTHO05D007205 4.8e-35 150.6 75 100.0
Nn6g35184 Nelumbo nucifera HOM05D000170 ORTHO05D007205 2.6e-28 128.3 72 86.1
CANSAT78G0870 Cannabis sativa HOM05D000170 ORTHO05D007205 2.1e-22 108.6 72 70.8
ClCG10G019690 Citrullus lanatus HOM05D000170 ORTHO05D007205 2.1e-22 108.6 72 66.7
Thecc.05G074200 Theobroma cacao HOM05D000170 ORTHO05D007205 2.1e-22 108.6 74 68.9
TAR636G2091 Trochodendron aralioides HOM05D000170 ORTHO05D007205 2.1e-22 108.6 72 69.4
CsaV3_3G036520 Cucumis sativus L. HOM05D000170 ORTHO05D007205 2.7e-22 108.2 72 66.7
CiPaw.09G004600 Carya illinoinensis HOM05D000170 ORTHO05D007205 3.6e-22 107.8 72 69.4
MD12G1103500 Malus domestica HOM05D000170 ORTHO05D007205 3.6e-22 107.8 72 70.8
TWI53G1443 Tripterygium wilfordii HOM05D000170 ORTHO05D007205 8.0e-22 106.7 72 69.4
MELO3C009403.2 Cucumis melo HOM05D000170 ORTHO05D007205 1.0e-21 106.3 72 65.3
Sed0014983 Sechium edule HOM05D000170 ORTHO05D007205 1.0e-21 106.3 72 66.7
Nn2g14231 Nelumbo nucifera HOM05D000170 ORTHO05D007205 1.4e-21 105.9 74 73.0
Atru.chr8.1713 Acer truncatum HOM05D000170 ORTHO05D007205 3.0e-21 104.8 72 68.1
Actinidia29541 Actinidia chinensis HOM05D000170 ORTHO05D007205 3.9e-21 104.4 72 68.1
Potri.006G120000 Populus trichocarpa HOM05D000170 ORTHO05D007205 3.9e-21 104.4 72 66.7
Gohir.A04G069100 Gossypium hirsutum HOM05D000170 ORTHO05D007205 5.2e-21 104.0 72 66.7
Gohir.D04G107400 Gossypium hirsutum HOM05D000170 ORTHO05D007205 5.2e-21 104.0 72 66.7
Gorai.009G411600 Gossypium raimondii HOM05D000170 ORTHO05D007205 5.2e-21 104.0 72 66.7
Sabra06G0094400 Salix brachista HOM05D000170 ORTHO05D007205 8.8e-21 103.2 72 66.7
Aqoxy1G01045 Aquilegia oxysepala HOM05D000170 ORTHO05D007205 1.1e-20 102.8 73 67.1
FvH4_6g17130 Fragaria vesca HOM05D000170 ORTHO05D007205 1.5e-20 102.4 72 63.9
FAN02G3292 Fragaria x ananassa HOM05D000170 ORTHO05D007205 1.5e-20 102.4 72 63.9
FAN14G2479 Fragaria x ananassa HOM05D000170 ORTHO05D007205 1.5e-20 102.4 72 63.9
HanXRQChr15g0477651 Helianthus annuus HOM05D000170 ORTHO05D007205 1.5e-20 102.4 73 68.5
RcHm_v2.0_Chr3g0471211 Rosa chinensis HOM05D000170 ORTHO05D007205 1.5e-20 102.4 72 65.3
Lalb_Chr25g0285571 Lupinus albus HOM05D000170 ORTHO05D007205 2.0e-20 102.1 72 66.7
Manes.08G016400 Manihot esculenta HOM05D000170 ORTHO05D007205 2.6e-20 101.7 72 63.9
Prupe.7G123600 Prunus persica HOM05D000170 ORTHO05D007205 2.6e-20 101.7 72 66.7
Cpa.g.sc5.132 Carica papaya HOM05D000170 ORTHO05D007205 5.7e-20 100.5 72 65.3
Ca_03451_v3 Cicer arietinum L. HOM05D000170 ORTHO05D007205 5.7e-20 100.5 72 66.7
Eucgr.A01600 Eucalyptus grandis HOM05D000170 ORTHO05D007205 9.7e-20 99.8 72 62.5
Lj3g0000213 Lotus japonicus HOM05D000170 ORTHO05D007205 9.7e-20 99.8 72 65.3
Aa31LG10G8310 Aethionema arabicum HOM05D000170 ORTHO05D007205 1.3e-19 99.4 72 63.9
arahy.Tifrunner.gnm1.ann1.F8BKZV Arachis hypogaea HOM05D000170 ORTHO05D007205 1.7e-19 99.0 72 63.9
Cfa016464 Carpinus fangiana HOM05D000170 ORTHO05D007205 1.7e-19 99.0 72 63.9
Ciclev10013655m.g Citrus clementina HOM05D000170 ORTHO05D007205 1.7e-19 99.0 72 62.5
Haze_19465 Corylus avellana HOM05D000170 ORTHO05D007205 1.7e-19 99.0 72 63.9
Carub.0005s1967 Capsella rubella HOM05D000170 ORTHO05D007205 2.2e-19 98.6 72 65.3
Ciclev10002505m.g Citrus clementina HOM05D000170 ORTHO05D007205 2.2e-19 98.6 72 62.5
Duzib093G0643 Durio zibethinus HOM05D000170 ORTHO05D007205 2.2e-19 98.6 72 65.3
MD14G1097900 Malus domestica HOM05D000170 ORTHO05D007205 2.2e-19 98.6 72 62.5
AL5G34020 Arabidopsis lyrata HOM05D000170 ORTHO05D007205 3.7e-19 97.8 72 62.5
arahy.Tifrunner.gnm1.ann1.DK6BL4 Arachis hypogaea HOM05D000170 ORTHO05D007205 3.7e-19 97.8 72 62.5
BcaB01g00314 Brassica carinata HOM05D000170 ORTHO05D007205 3.7e-19 97.8 72 62.5
Nn1g05721 Nelumbo nucifera HOM05D000170 ORTHO05D007205 3.7e-19 97.8 72 69.4
CARHR162990 Cardamine hirsuta HOM05D000170 ORTHO05D007205 4.8e-19 97.4 72 62.5
COL.COLO4_22244 Corchorus olitorius HOM05D000170 ORTHO05D007205 4.8e-19 97.4 72 62.5
Phvul.005G070300 Phaseolus vulgaris HOM05D000170 ORTHO05D007205 4.8e-19 97.4 72 63.9
Ciclev10033543m.g Citrus clementina HOM05D000170 ORTHO05D007205 6.3e-19 97.1 73 60.3
AT3G53140 Arabidopsis thaliana HOM05D000170 ORTHO05D007205 8.2e-19 96.7 72 62.5
BcaC02g09181 Brassica carinata HOM05D000170 ORTHO05D007205 8.2e-19 96.7 72 63.9
A04p06250 Brassica napus HOM05D000170 ORTHO05D007205 8.2e-19 96.7 72 63.9
C04p39760 Brassica napus HOM05D000170 ORTHO05D007205 8.2e-19 96.7 72 63.9
BolC4t25548H Brassica oleracea HOM05D000170 ORTHO05D007205 8.2e-19 96.7 72 63.9
BraA04t16330Z Brassica rapa HOM05D000170 ORTHO05D007205 8.2e-19 96.7 72 63.9
Thhalv10023542m.g Eutrema salsugineum HOM05D000170 ORTHO05D007205 8.2e-19 96.7 72 63.9
Psat1g007920 Pisum sativum HOM05D000170 ORTHO05D007205 8.2e-19 96.7 72 63.9
Thhalv10010488m.g Eutrema salsugineum HOM05D000170 ORTHO05D007205 1.1e-18 96.3 72 62.5
Lsat_1_v5_gn_2_19801 Lactuca sativa HOM05D000170 ORTHO05D007205 1.1e-18 96.3 73 64.4
Sp5g09180 Schrenkiella parvula HOM05D000170 ORTHO05D007205 1.4e-18 95.9 72 62.5
PGSC0003DMG400008591 Solanum tuberosum HOM05D000170 ORTHO05D007205 1.4e-18 95.9 72 63.9
VMungo1080G0369 Vigna mungo HOM05D000170 ORTHO05D007205 1.8e-18 95.5 72 62.5
TPR.G27302 Trifolium pratense HOM05D000170 ORTHO05D007205 2.4e-18 95.1 72 63.9
Ciclev10027189m.g Citrus clementina HOM05D000170 ORTHO05D007205 4.1e-18 94.4 73 60.3
Glyma.15G241100 Glycine max HOM05D000170 ORTHO05D007205 4.1e-18 94.4 72 61.1
PSO063G2881 Papaver somniferum HOM05D000170 ORTHO05D007205 4.1e-18 94.4 74 64.9
QL07p041523 Quercus lobata HOM05D000170 ORTHO05D007205 4.1e-18 94.4 72 63.9
Solyc10g085830.2 Solanum lycopersicum HOM05D000170 ORTHO05D007205 4.1e-18 94.4 72 63.9
CAN.G729.6 Capsicum annuum HOM05D000170 ORTHO05D007205 5.3e-18 94.0 72 61.1
Ciclev10010561m.g Citrus clementina HOM05D000170 ORTHO05D007205 7.0e-18 93.6 73 57.5
Ciclev10029876m.g Citrus clementina HOM05D000170 ORTHO05D007205 7.0e-18 93.6 72 58.3
Nn3g17961 Nelumbo nucifera HOM05D000170 ORTHO05D007205 7.0e-18 93.6 64 70.3
Medtr2g072790 Medicago truncatula HOM05D000170 ORTHO05D007205 9.1e-18 93.2 72 59.7
Sopen10g035230 Solanum pennellii HOM05D000170 ORTHO05D007205 9.1e-18 93.2 72 62.5
Glyma.13G263200 Glycine max HOM05D000170 ORTHO05D007205 1.2e-17 92.8 72 59.7
PGR004G2213 Punica granatum HOM05D000170 ORTHO05D007205 1.6e-17 92.4 73 60.3
Ciclev10010158m.g Citrus clementina HOM05D000170 ORTHO05D007205 2.6e-17 91.7 72 58.3
THA.LOC104818584 Tarenaya hassleriana HOM05D000170 ORTHO05D007205 4.5e-17 90.9 72 58.3
Nitab4.5_0000725g0060 Nicotiana tabacum HOM05D000170 ORTHO05D007205 1.7e-16 89.0 72 61.1
QL07p041500 Quercus lobata HOM05D000170 ORTHO05D007205 1.7e-16 89.0 72 59.7
CAN.G729.7 Capsicum annuum HOM05D000170 ORTHO05D007205 3.8e-16 87.8 72 55.6
Peaxi162Scf00017g00118 Petunia axillaris HOM05D000170 ORTHO05D007205 3.8e-16 87.8 73 61.6
Nn1g05691 Nelumbo nucifera HOM05D000170 ORTHO05D007205 6.5e-16 87.0 64 68.8
MBI18_g12594_MAGBIO Magnolia biondii HOM05D000170 ORTHO05D007205 1.5e-15 85.9 74 59.5
MBI18_g37955_MAGBIO Magnolia biondii HOM05D000170 ORTHO05D007205 1.5e-15 85.9 74 59.5
CDE06G0899 Ceratophyllum demersum HOM05D000170 ORTHO05D007205 9.4e-15 83.2 74 56.8
Sopen10g035240 Solanum pennellii HOM05D000170 ORTHO05D007205 9.4e-15 83.2 74 54.1
Nn4g24441 Nelumbo nucifera HOM05D000170 ORTHO05D007205 3.6e-14 81.3 61 70.5
SEGI_14789 Sequoiadendron giganteum HOM05D000170 ORTHO05D007205 8.0e-14 80.1 72 50.0
Sc02g0001380 Simmondsia chinensis HOM05D000170 ORTHO05D007205 1.0e-13 79.7 76 55.3
AUR62029078 Chenopodium quinoa HOM05D000170 ORTHO05D007205 8.8e-13 76.6 74 56.8
Os02g0823400 Oryza sativa ssp. japonica HOM05D000170 ORTHO05D007205 2.0e-12 75.5 76 53.9
EL10Ac7g16712 Beta vulgaris HOM05D000170 ORTHO05D007205 1.7e-11 72.4 74 54.1
Ah.08g211320 Amaranthus hybridus HOM05D000170 ORTHO05D007205 2.2e-11 72.0 74 52.7
arahy.Tifrunner.gnm1.ann1.I1E7E1 Arachis hypogaea HOM05D000170 ORTHO05D007205 2.2e-11 72.0 72 45.8
TPR.G34644 Trifolium pratense HOM05D000170 ORTHO05D007205 2.2e-11 72.0 72 50.0
arahy.Tifrunner.gnm1.ann1.BIS5KZ Arachis hypogaea HOM05D000170 ORTHO05D007205 8.3e-11 70.1 72 48.6
arahy.Tifrunner.gnm1.ann1.D2PEMM Arachis hypogaea HOM05D000170 ORTHO05D007205 8.3e-11 70.1 72 48.6
arahy.Tifrunner.gnm1.ann1.S7NHY3 Arachis hypogaea HOM05D000170 ORTHO05D007205 8.3e-11 70.1 72 44.4
Zm00001eb190920 Zea mays HOM05D000170 ORTHO05D007205 8.3e-11 70.1 77 50.6
Lalb_Chr08g0238401 Lupinus albus HOM05D000170 ORTHO05D007205 1.8e-10 68.9 72 47.2
ATR0665G430 Amborella trichopoda HOM05D000170 ORTHO05D007205 2.4e-10 68.6 72 45.8
Ca_16937_v3 Cicer arietinum L. HOM05D000170 ORTHO05D007205 2.4e-10 68.6 72 43.1
Medtr3g096050 Medicago truncatula HOM05D000170 ORTHO05D007205 7.0e-10 67.0 72 45.8
SMO358G0513 Selaginella moellendorffii HOM05D000170 ORTHO05D000159 5.9e-09 63.9 73 46.6
Medtr3g096070 Medicago truncatula HOM05D000170 ORTHO05D007205 7.7e-09 63.5 72 44.4
Medtr7g011900 Medicago truncatula HOM05D000170 ORTHO05D000159 2.9e-08 61.6 72 43.1
Psat3g060280 Pisum sativum HOM05D000170 ORTHO05D007205 2.9e-08 61.6 72 44.4
Psat3g060200 Pisum sativum HOM05D000170 ORTHO05D007205 3.8e-08 61.2 72 45.8
Psat3g198520 Pisum sativum HOM05D000170 ORTHO05D000159 1.1e-07 59.7 72 40.3
Medtr7g011990 Medicago truncatula HOM05D000170 ORTHO05D000159 1.5e-07 59.3 72 36.1
PGSC0003DMG400020096 Solanum tuberosum HOM05D000170 ORTHO05D000159 1.9e-07 58.9 61 44.3
Glyma.18G263700 Glycine max HOM05D000170 ORTHO05D000159 2.5e-07 58.5 72 37.5
Psat3g198600 Pisum sativum HOM05D000170 ORTHO05D000159 2.5e-07 58.5 72 38.9
PGSC0003DMG400020094 Solanum tuberosum HOM05D000170 ORTHO05D000159 2.5e-07 58.5 73 42.5
Psat3g198680 Pisum sativum HOM05D000170 ORTHO05D000159 3.2e-07 58.2 72 38.9
VMungo0720G2435 Vigna mungo HOM05D000170 ORTHO05D000159 3.2e-07 58.2 72 40.3
CAN.G771.74 Capsicum annuum HOM05D000170 ORTHO05D000159 5.5e-07 57.4 71 40.8
Medtr7g012070 Medicago truncatula HOM05D000170 ORTHO05D000159 5.5e-07 57.4 72 38.9
Medtr7g012090 Medicago truncatula HOM05D000170 ORTHO05D000159 5.5e-07 57.4 72 38.9
Sopen06g034830 Solanum pennellii HOM05D000170 ORTHO05D000159 5.5e-07 57.4 61 42.6
PGSC0003DMG400020097 Solanum tuberosum HOM05D000170 ORTHO05D000159 5.5e-07 57.4 61 44.3
Nn1g08823 Nelumbo nucifera HOM05D000170 ORTHO05D000159 7.2e-07 57.0 59 42.4
Sc26g0000600 Simmondsia chinensis HOM05D000170 ORTHO05D000159 9.4e-07 56.6 59 45.8
Aqoxy1G03354 Aquilegia oxysepala HOM05D000170 ORTHO05D000159 1.2e-06 56.2 73 43.8
Medtr7g012020 Medicago truncatula HOM05D000170 ORTHO05D000159 1.2e-06 56.2 72 37.5
Nn1g02666 Nelumbo nucifera HOM05D000170 ORTHO05D018666 1.2e-06 56.2 31 83.9
Nitab4.5_0001564g0030 Nicotiana tabacum HOM05D000170 ORTHO05D000159 1.2e-06 56.2 64 40.6
Nitab4.5_0003866g0040 Nicotiana tabacum HOM05D000170 ORTHO05D000159 1.2e-06 56.2 64 40.6
Hund21062 Selenicereus undatus HOM05D000170 ORTHO05D000159 1.2e-06 56.2 72 38.9
Hund21063 Selenicereus undatus HOM05D000170 ORTHO05D000159 1.2e-06 56.2 72 38.9
Lsat_1_v5_gn_9_12221 Lactuca sativa HOM05D000170 ORTHO05D000159 1.6e-06 55.8 73 41.1
Lj5g0025120 Lotus japonicus HOM05D000170 ORTHO05D000159 1.6e-06 55.8 72 40.3
MBI16_g37130_MAGBIO Magnolia biondii HOM05D000170 ORTHO05D000159 1.6e-06 55.8 60 45.0
Nitab4.5_0014561g0010 Nicotiana tabacum HOM05D000170 ORTHO05D000159 1.6e-06 55.8 73 37.0
CAN.G771.77 Capsicum annuum HOM05D000170 ORTHO05D000159 2.1e-06 55.5 73 38.4
Lj3g0013456 Lotus japonicus HOM05D000170 ORTHO05D000159 2.1e-06 55.5 77 35.1
Nn5g27665 Nelumbo nucifera HOM05D000170 ORTHO05D000159 2.1e-06 55.5 73 38.4
Hund21064 Selenicereus undatus HOM05D000170 ORTHO05D000159 2.1e-06 55.5 58 41.4
Sopen06g034810 Solanum pennellii HOM05D000170 ORTHO05D000159 2.1e-06 55.5 61 42.6
VMungo1383G1200 Vigna mungo HOM05D000170 ORTHO05D000159 2.7e-06 55.1 72 37.5
Lj5g0006893 Lotus japonicus HOM05D000170 ORTHO05D000159 3.6e-06 54.7 72 37.5
BcaC04g21224 Brassica carinata HOM05D000170 ORTHO05D000159 4.7e-06 54.3 73 38.4
C09p34150 Brassica napus HOM05D000170 ORTHO05D000159 4.7e-06 54.3 73 38.4
BolC9t56261H Brassica oleracea HOM05D000170 ORTHO05D000159 4.7e-06 54.3 73 38.4
CAN.G303.30 Capsicum annuum HOM05D000170 ORTHO05D000159 4.7e-06 54.3 68 41.2
Eucgr.A01395 Eucalyptus grandis HOM05D000170 ORTHO05D000159 4.7e-06 54.3 71 38.0
Lj1g0005657 Lotus japonicus HOM05D000170 ORTHO05D000159 4.7e-06 54.3 72 33.3
Lj1g0006251 Lotus japonicus HOM05D000170 ORTHO05D000159 4.7e-06 54.3 72 33.3
A10p11460 Brassica napus HOM05D000170 ORTHO05D000159 6.1e-06 53.9 73 39.7
BraA10t43240Z Brassica rapa HOM05D000170 ORTHO05D000159 6.1e-06 53.9 73 39.7
Duzib205G0986 Durio zibethinus HOM05D000170 ORTHO05D000159 6.1e-06 53.9 73 38.4
Sopen06g034820 Solanum pennellii HOM05D000170 ORTHO05D000159 6.1e-06 53.9 61 44.3
BcaC04g20369 Brassica carinata HOM05D000170 ORTHO05D000159 8.0e-06 53.5 73 38.4
BcaC04g20371 Brassica carinata HOM05D000170 ORTHO05D000159 8.0e-06 53.5 73 38.4
C09p44400 Brassica napus HOM05D000170 ORTHO05D000159 8.0e-06 53.5 73 38.4
C09p44420 Brassica napus HOM05D000170 ORTHO05D000159 8.0e-06 53.5 73 38.4
Thhalv10023537m.g Eutrema salsugineum HOM05D000170 ORTHO05D000159 8.0e-06 53.5 71 39.4
Oeu061032.1 Olea europaea HOM05D000170 ORTHO05D000159 8.0e-06 53.5 71 39.4


User provided reference genes

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