Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 1.2e-222 776.2 386 100.0
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 1.0e-136 490.7 326 74.2
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 3.8e-136 488.8 326 74.2
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 1.4e-125 453.8 326 68.4
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 5.7e-124 448.4 326 68.7
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 4.1e-122 442.2 325 67.7
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 1.0e-120 437.6 326 68.1
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 1.7e-120 436.8 326 67.8
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 2.5e-119 433.0 326 66.9
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 5.6e-119 431.8 326 67.5
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 7.3e-119 431.4 324 67.3
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 9.5e-119 431.0 326 66.9
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 3.6e-118 429.1 326 67.2
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 8.0e-118 427.9 327 66.7
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 3.0e-117 426.0 326 64.7
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 6.8e-117 424.9 327 66.4
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 6.8e-117 424.9 326 66.0
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 4.4e-116 422.2 324 65.7
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 7.5e-116 421.4 327 66.1
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 9.8e-116 421.0 329 65.3
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 9.8e-116 421.0 326 66.6
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 2.2e-115 419.9 328 66.2
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 2.2e-115 419.9 324 64.2
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 2.2e-115 419.9 326 65.0
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 1.1e-114 417.5 336 62.5
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 4.1e-114 415.6 326 64.1
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 7.0e-114 414.8 326 65.6
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 9.2e-114 414.5 326 63.8
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 9.2e-114 414.5 326 63.8
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 7.8e-113 411.4 324 63.0
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 7.8e-113 411.4 326 63.8
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.3e-112 410.6 326 63.5
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 1.3e-112 410.6 326 64.7
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 2.3e-112 409.8 326 64.4
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 3.0e-112 409.5 358 60.9
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 1.9e-111 406.8 326 63.8
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 3.3e-111 406.0 326 64.1
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 1.2e-110 404.1 326 64.1
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 1.6e-110 403.7 326 64.1
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 2.1e-110 403.3 324 64.5
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 6.2e-110 401.7 327 63.9
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 1.1e-109 401.0 324 62.7
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 1.8e-109 400.2 324 64.2
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 2.3e-109 399.8 326 63.8
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 3.1e-109 399.4 325 63.1
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 4.0e-109 399.1 376 56.1
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 7.5e-108 394.8 326 63.2
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 3.7e-107 392.5 326 62.6
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 6.4e-107 391.7 325 62.8
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 1.1e-106 391.0 324 60.8
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 4.1e-106 389.0 325 62.5
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 4.1e-106 389.0 324 61.1
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 3.5e-105 386.0 329 60.8
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 7.8e-105 384.8 326 61.3
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 7.8e-105 384.8 326 61.0
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 1.0e-104 384.4 326 62.0
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 1.9e-103 380.2 326 62.3
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 2.5e-103 379.8 308 62.7
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 9.5e-103 377.9 326 58.3
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 4.7e-102 375.6 325 60.3
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 2.3e-101 373.2 324 60.8
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 4.0e-101 372.5 324 60.2
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 1.2e-100 370.9 329 59.6
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 1.2e-100 370.9 367 54.0
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 1.5e-100 370.5 324 58.3
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 2.0e-100 370.2 329 57.4
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 2.9e-99 366.3 309 62.5
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 8.3e-99 364.8 327 59.0
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 3.2e-98 362.8 326 56.4
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 5.4e-98 362.1 326 56.7
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 2.1e-97 360.1 328 59.1
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 7.8e-97 358.2 326 58.3
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 1.7e-96 357.1 323 57.6
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 3.9e-96 355.9 328 57.9
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 3.9e-96 355.9 330 56.7
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 5.1e-96 355.5 298 62.4
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 6.6e-96 355.1 300 61.7
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 1.5e-95 354.0 342 56.1
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 4.3e-95 352.4 327 56.9
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 1.6e-94 350.5 296 61.8
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 1.6e-94 350.5 326 58.0
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 8.1e-94 348.2 331 56.8
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 3.1e-93 346.3 302 61.9
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 6.8e-93 345.1 332 56.6
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 2.6e-92 343.2 278 63.3
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 3.4e-92 342.8 326 55.8
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 1.7e-91 340.5 333 56.5
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 6.4e-91 338.6 285 61.1
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 6.4e-91 338.6 302 58.6
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 8.4e-91 338.2 325 57.2
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 1.1e-90 337.8 332 56.0
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 1.9e-90 337.0 329 57.4
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 3.2e-90 336.3 332 56.3
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 4.1e-90 335.9 332 56.3
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 1.6e-89 334.0 336 54.8
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 1.6e-89 334.0 335 55.2
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 2.7e-89 333.2 329 55.0
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 2.7e-89 333.2 325 54.2
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 4.6e-89 332.4 332 56.0
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 4.6e-89 332.4 332 56.0
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 4.6e-89 332.4 332 56.3
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 4.6e-89 332.4 261 65.5
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 7.8e-89 331.6 328 54.3
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 1.0e-88 331.3 329 55.6
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 3.9e-88 329.3 330 56.1
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 1.5e-87 327.4 331 56.2
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 4.3e-87 325.9 340 54.1
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 4.3e-87 325.9 326 55.2
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 1.1e-85 321.2 333 49.8
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 3.1e-85 319.7 326 53.7
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 2.6e-84 316.6 323 49.2
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 6.4e-83 312.0 324 48.8
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 3.2e-82 309.7 324 48.5
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 1.6e-81 307.4 301 56.8
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 6.0e-81 305.4 257 59.9
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 8.1e-78 295.0 324 48.8
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 9.0e-77 291.6 344 47.1
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 2.6e-76 290.0 211 67.3
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 9.9e-76 288.1 307 50.5
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 2.2e-75 287.0 326 50.6
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 2.9e-75 286.6 279 54.1
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 6.4e-75 285.4 301 49.8
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 1.8e-72 277.3 272 55.1
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 2.5e-71 273.5 286 52.8
ATR0757G223 Amborella trichopoda HOM05D004815 ORTHO05D005742 3.1e-69 266.5 222 61.3
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 6.9e-69 265.4 259 54.8
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 9.0e-69 265.0 392 42.6
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 4.5e-68 262.7 289 52.6
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 2.4e-66 256.9 291 47.1
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 2.4e-66 256.9 339 44.5
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 3.1e-61 240.0 358 39.4
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 5.3e-61 239.2 340 39.4
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 1.5e-55 221.1 262 46.2
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 2.8e-54 216.9 332 37.7
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 1.1e-53 214.9 256 49.6
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 7.7e-52 208.8 198 55.1
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 3.6e-49 199.9 339 35.4
CDE11G0585 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 1.5e-47 194.5 136 66.9
FAN10G0991 Fragaria x ananassa HOM05D004815 ORTHO05D005742 1.3e-43 181.4 115 73.9
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 2.9e-43 180.3 167 53.3
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 1.4e-40 171.4 197 48.7
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 2.0e-39 167.5 346 30.6
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 4.7e-33 146.4 156 50.0
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 1.8e-29 134.4 109 61.5
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 1.1e-26 125.2 148 51.4
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 4.7e-25 119.8 233 30.9
PRCOL_00005618 Prasinoderma coloniale HOM05D004815 ORTHO05D005742 8.5e-19 99.0 297 24.9
Aa31sc1021G10 Aethionema arabicum HOM05D004815 ORTHO05D005742 5.5e-18 96.3 119 44.5
COL.COLO4_24134 Corchorus olitorius HOM05D000638 ORTHO05D000801 2.1e-17 94.4 72 69.4
MBI11_g13051_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 4.8e-14 83.2 78 48.7
Lj3g0018651 Lotus japonicus HOM05D004815 ORTHO05D005742 1.2e-12 78.6 42 85.7
Hund16967 Selenicereus undatus HOM05D004815 ORTHO05D005742 5.5e-10 69.7 83 48.2
RcHm_v2.0_Chr1g0351871 Rosa chinensis HOM05D004815 ORTHO05D005742 6.8e-08 62.8 46 67.4


User provided reference genes

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