Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g01261 Nelumbo nucifera HOM05D005292 ORTHO05D006473 1.0e-232 809.7 407 100.0
GSVIVG01004916001 Vitis vinifera HOM05D005292 ORTHO05D006473 2.3e-168 595.9 374 78.6
Cfa012803 Carpinus fangiana HOM05D005292 ORTHO05D006473 1.4e-165 586.6 343 82.5
QL12p014915 Quercus lobata HOM05D005292 ORTHO05D006473 3.2e-165 585.5 358 81.3
CiPaw.11G147800 Carya illinoinensis HOM05D005292 ORTHO05D006473 2.3e-163 579.3 360 79.2
Ca_12278_v3 Cicer arietinum L. HOM05D005292 ORTHO05D006473 3.9e-163 578.6 408 70.6
Lj4g0005126 Lotus japonicus HOM05D005292 ORTHO05D006473 6.6e-163 577.8 351 79.8
TAR636G1323 Trochodendron aralioides HOM05D005292 ORTHO05D006473 4.3e-162 575.1 346 82.1
CiPaw.12G105300 Carya illinoinensis HOM05D005292 ORTHO05D006473 7.3e-162 574.3 354 79.7
Atru.chr9.1428 Acer truncatum HOM05D005292 ORTHO05D006473 1.2e-161 573.5 344 80.5
Duzib084G0213 Durio zibethinus HOM05D005292 ORTHO05D006473 1.6e-161 573.2 351 79.5
CANSAT80G2034 Cannabis sativa HOM05D005292 ORTHO05D006473 3.6e-161 572.0 346 80.3
TPR.G37684 Trifolium pratense HOM05D005292 ORTHO05D006473 3.6e-161 572.0 368 76.1
Glyma.17G134700 Glycine max HOM05D005292 ORTHO05D006473 6.2e-161 571.2 344 80.5
Glyma.05G052500 Glycine max HOM05D005292 ORTHO05D006473 8.1e-161 570.9 344 80.5
Lalb_Chr05g0225431 Lupinus albus HOM05D005292 ORTHO05D006473 1.1e-160 570.5 384 74.5
COL.COLO4_31983 Corchorus olitorius HOM05D005292 ORTHO05D006473 1.4e-160 570.1 351 78.3
VMungo1215G1740 Vigna mungo HOM05D005292 ORTHO05D006473 3.1e-160 568.9 352 78.1
Cpa.g.sc29.95 Carica papaya HOM05D005292 ORTHO05D006473 1.5e-159 566.6 388 73.5
Oeu016513.1 Olea europaea HOM05D005292 ORTHO05D006473 5.8e-159 564.7 340 80.3
Ciclev10020454m.g Citrus clementina HOM05D005292 ORTHO05D006473 7.6e-159 564.3 408 70.3
Phvul.003G214500 Phaseolus vulgaris HOM05D005292 ORTHO05D006473 9.9e-159 563.9 351 78.1
Thecc.03G261400 Theobroma cacao HOM05D005292 ORTHO05D006473 9.9e-159 563.9 384 72.4
arahy.Tifrunner.gnm1.ann1.VS5X7Y Arachis hypogaea HOM05D005292 ORTHO05D006473 1.3e-158 563.5 342 80.7
arahy.Tifrunner.gnm1.ann1.YRMJ3W Arachis hypogaea HOM05D005292 ORTHO05D006473 1.3e-158 563.5 340 81.2
MSTRG.12063 Avicennia marina HOM05D005292 ORTHO05D006473 2.9e-158 562.4 384 71.9
Gohir.D12G223000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 5.4e-157 558.1 351 77.8
Nn4g26373 Nelumbo nucifera HOM05D005292 ORTHO05D006473 1.2e-156 557.0 380 75.8
Hma1.2p1_0367F.1_g137040 Hydrangea macrophylla HOM05D005292 ORTHO05D006473 2.1e-156 556.2 371 73.6
Psat4g068120 Pisum sativum HOM05D005292 ORTHO05D006473 4.6e-156 555.1 348 78.4
Medtr4g102260 Medicago truncatula HOM05D005292 ORTHO05D006473 7.8e-156 554.3 405 70.1
Prupe.5G079200 Prunus persica HOM05D005292 ORTHO05D006473 1.7e-155 553.1 355 76.6
Manes.02G033900 Manihot esculenta HOM05D005292 ORTHO05D006473 4.3e-154 548.5 331 81.3
Potri.001G118000 Populus trichocarpa HOM05D005292 ORTHO05D006473 5.6e-154 548.1 346 77.7
Gohir.D03G157800 Gossypium hirsutum HOM05D005292 ORTHO05D006473 7.3e-154 547.7 393 70.0
Peaxi162Scf00271g00021 Petunia axillaris HOM05D005292 ORTHO05D006473 7.3e-154 547.7 379 71.8
Gorai.008G239300 Gossypium raimondii HOM05D005292 ORTHO05D006473 9.6e-154 547.4 373 73.2
Solyc08g079450.3 Solanum lycopersicum HOM05D005292 ORTHO05D006473 1.6e-153 546.6 388 70.9
Gohir.A03G012000 Gossypium hirsutum HOM05D005292 ORTHO05D006473 2.8e-153 545.8 393 69.5
Gorai.003G166300 Gossypium raimondii HOM05D005292 ORTHO05D006473 2.8e-153 545.8 393 70.0
PSO782G2032 Papaver somniferum HOM05D005292 ORTHO05D006473 2.8e-153 545.8 316 82.6
Sopen08g027820 Solanum pennellii HOM05D005292 ORTHO05D006473 3.6e-153 545.4 388 70.6
MD04G1079900 Malus domestica HOM05D005292 ORTHO05D006473 4.7e-153 545.0 353 75.6
CAN.G630.87 Capsicum annuum HOM05D005292 ORTHO05D006473 8.1e-153 544.3 379 71.0
Sed0004099 Sechium edule HOM05D005292 ORTHO05D006473 5.2e-152 541.6 385 71.4
PGR031G2306 Punica granatum HOM05D005292 ORTHO05D006473 6.9e-152 541.2 310 82.9
Cc08_g13210 Coffea canephora HOM05D005292 ORTHO05D006473 9.0e-152 540.8 358 74.6
Eucgr.D01991 Eucalyptus grandis HOM05D005292 ORTHO05D006473 9.0e-152 540.8 338 78.1
Nitab4.5_0003534g0020 Nicotiana tabacum HOM05D005292 ORTHO05D006473 9.0e-152 540.8 377 71.9
Dinv21573 Davidia involucrata HOM05D005292 ORTHO05D006473 1.5e-151 540.0 387 70.8
Potri.003G114900 Populus trichocarpa HOM05D005292 ORTHO05D006473 5.8e-151 538.1 400 68.2
TWI15G0139 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 9.9e-151 537.3 352 74.4
Dinv39082 Davidia involucrata HOM05D005292 ORTHO05D006473 1.7e-150 536.6 381 71.1
Lj8A255T56 Lonicera japonica HOM05D005292 ORTHO05D006473 2.2e-150 536.2 347 75.2
CSS0004035 Camellia sinensis var. sinensis HOM05D005292 ORTHO05D006473 2.4e-149 532.7 408 67.2
CDE09G1063 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 7.1e-149 531.2 388 67.5
Sc22g0000600 Simmondsia chinensis HOM05D005292 ORTHO05D006473 3.5e-148 528.9 318 78.0
SGA_v2.0_scaffold120G32820 Striga asiatica HOM05D005292 ORTHO05D006473 3.5e-148 528.9 398 67.1
MBI12_g31646_MAGBIO Magnolia biondii HOM05D005292 ORTHO05D006473 7.8e-148 527.7 381 71.7
Hund14648 Selenicereus undatus HOM05D005292 ORTHO05D006473 7.8e-148 527.7 318 80.2
Aqoxy7G00654 Aquilegia oxysepala HOM05D005292 ORTHO05D006473 1.3e-147 526.9 337 77.2
PSO478G4449 Papaver somniferum HOM05D005292 ORTHO05D006473 3.0e-147 525.8 316 80.4
Actinidia02093 Actinidia chinensis HOM05D005292 ORTHO05D006473 5.1e-147 525.0 286 86.0
PGSC0003DMG400003959 Solanum tuberosum HOM05D005292 ORTHO05D006473 6.6e-147 524.6 379 69.1
CsaV3_5G003780 Cucumis sativus L. HOM05D005292 ORTHO05D006473 8.7e-147 524.2 344 76.2
Gorai.007G021400 Gossypium raimondii HOM05D005292 ORTHO05D006473 1.1e-146 523.9 346 74.9
Gohir.A11G020400 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.9e-146 523.1 345 74.5
FAN08G1347 Fragaria x ananassa HOM05D005292 ORTHO05D006473 9.6e-146 520.8 391 68.8
Gohir.A12G220700 Gossypium hirsutum HOM05D005292 ORTHO05D006473 1.6e-145 520.0 324 77.5
THA.LOC104813867 Tarenaya hassleriana HOM05D005292 ORTHO05D006473 1.6e-145 520.0 296 81.4
EL10Ac5g12610 Beta vulgaris HOM05D005292 ORTHO05D006473 3.6e-145 518.8 333 74.2
FAN18G3339 Fragaria x ananassa HOM05D005292 ORTHO05D006473 1.4e-144 516.9 396 68.2
RcHm_v2.0_Chr7g0201621 Rosa chinensis HOM05D005292 ORTHO05D006473 1.8e-144 516.5 396 67.7
FAN13G3324 Fragaria x ananassa HOM05D005292 ORTHO05D006473 4.0e-144 515.4 396 68.2
Thhalv10028717m.g Eutrema salsugineum HOM05D005292 ORTHO05D006473 5.3e-144 515.0 355 71.8
Gohir.D11G020100 Gossypium hirsutum HOM05D005292 ORTHO05D006473 5.3e-144 515.0 345 73.6
FAN04G0899 Fragaria x ananassa HOM05D005292 ORTHO05D006473 6.9e-144 514.6 396 67.9
BcaC01g04601 Brassica carinata HOM05D005292 ORTHO05D006473 9.0e-144 514.2 355 72.7
CARHR254020 Cardamine hirsuta HOM05D005292 ORTHO05D006473 1.5e-143 513.5 294 81.6
ECA233G3282 Erigeron canadensis HOM05D005292 ORTHO05D006473 3.4e-143 512.3 351 72.1
Nitab4.5_0007591g0040 Nicotiana tabacum HOM05D005292 ORTHO05D006473 3.4e-143 512.3 355 71.8
A03p29600 Brassica napus HOM05D005292 ORTHO05D006473 4.5e-143 511.9 355 72.7
HanXRQChr07g0188671 Helianthus annuus HOM05D005292 ORTHO05D006473 7.6e-143 511.1 358 71.5
AL6G47090 Arabidopsis lyrata HOM05D005292 ORTHO05D006473 9.9e-143 510.8 333 74.2
BcaB01g02654 Brassica carinata HOM05D005292 ORTHO05D006473 9.9e-143 510.8 349 73.1
Sp6g05330 Schrenkiella parvula HOM05D005292 ORTHO05D006473 9.9e-143 510.8 305 79.0
BraA03t12155Z Brassica rapa HOM05D005292 ORTHO05D006473 1.3e-142 510.4 355 72.4
AUR62010507 Chenopodium quinoa HOM05D005292 ORTHO05D006473 1.3e-142 510.4 333 72.4
C03p35880 Brassica napus HOM05D005292 ORTHO05D006473 4.9e-142 508.4 387 68.0
BolC3t15896H Brassica oleracea HOM05D005292 ORTHO05D006473 4.9e-142 508.4 387 68.0
AT4G12230 Arabidopsis thaliana HOM05D005292 ORTHO05D006473 6.4e-142 508.1 359 69.9
ClCG01G003660 Citrullus lanatus HOM05D005292 ORTHO05D006473 1.1e-141 507.3 406 66.5
Carub.0006s3135 Capsella rubella HOM05D005292 ORTHO05D006473 1.4e-141 506.9 332 73.8
Migut.A00832 Erythranthe guttata HOM05D005292 ORTHO05D006473 1.9e-141 506.5 380 67.6
HanXRQChr02g0046251 Helianthus annuus HOM05D005292 ORTHO05D006473 3.2e-141 505.8 311 77.2
Haze_08610 Corylus avellana HOM05D005292 ORTHO05D006473 1.6e-140 503.4 403 65.8
SalBow1G6483 Salvia bowleyana HOM05D005292 ORTHO05D006473 2.7e-140 502.7 376 67.6
Ah.12g058260 Amaranthus hybridus HOM05D005292 ORTHO05D006473 3.0e-139 499.2 369 67.2
Aa31LG9G10310 Aethionema arabicum HOM05D005292 ORTHO05D006473 3.9e-139 498.8 424 63.2
DCAR_006803 Daucus carota HOM05D005292 ORTHO05D006473 3.9e-139 498.8 305 78.4
Os10g0169800 Oryza sativa ssp. japonica HOM05D005292 ORTHO05D006473 2.4e-136 489.6 329 71.1
Sabra01G0090700 Salix brachista HOM05D005292 ORTHO05D006473 4.0e-136 488.8 442 59.5
CDE11G0205 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 6.9e-136 488.0 335 71.6
vmacro14043 Vaccinium macrocarpon HOM05D005292 ORTHO05D006473 1.2e-135 487.3 361 68.1
Ah.02g116220 Amaranthus hybridus HOM05D005292 ORTHO05D006473 4.2e-133 478.8 266 81.6
unitig_744.g24320 Utricularia gibba HOM05D005292 ORTHO05D006473 7.1e-133 478.0 375 65.1
Zm00001eb026990 Zea mays HOM05D005292 ORTHO05D006473 2.7e-132 476.1 348 68.4
AUR62017394 Chenopodium quinoa HOM05D005292 ORTHO05D006473 1.8e-131 473.4 312 71.2
ATR0757G031 Amborella trichopoda HOM05D005292 ORTHO05D006473 9.6e-130 467.6 266 82.7
Lsat_1_v5_gn_6_9841 Lactuca sativa HOM05D005292 ORTHO05D006473 2.0e-127 459.9 326 69.9
TWI15G0397 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 6.0e-124 448.4 390 61.8
SEGI_16146 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 5.1e-123 445.3 329 66.0
HPP92_014608 Vanilla planifolia HOM05D005292 ORTHO05D006473 6.9e-120 434.9 349 63.0
Pp3c6_20320 Physcomitrium patens HOM05D005292 ORTHO05D006473 1.5e-114 417.2 280 68.6
Rhsim07G0101700 Rhododendron simsii HOM05D005292 ORTHO05D006473 2.6e-111 406.4 358 60.1
Mapoly0066s0051 Marchantia polymorpha HOM05D005292 ORTHO05D006473 5.9e-111 405.2 272 68.0
Sabra03G0079600 Salix brachista HOM05D005292 ORTHO05D006473 1.7e-110 403.7 219 86.3
SMO223G0031 Selaginella moellendorffii HOM05D005292 ORTHO05D006473 1.7e-110 403.7 274 66.4
AagrBONN_evm.TU.Sc2ySwM_368.248 Anthoceros agrestis HOM05D005292 ORTHO05D006473 4.2e-109 399.1 335 60.3
FvH4_5g00640 Fragaria vesca HOM05D005292 ORTHO05D006473 1.0e-107 394.4 332 64.5
Duzib205G1434 Durio zibethinus HOM05D005292 ORTHO05D006473 6.3e-105 385.2 398 54.8
TAR629G1108 Trochodendron aralioides HOM05D005292 ORTHO05D006473 1.4e-99 367.5 183 91.3
Oeu022319.3 Olea europaea HOM05D005292 ORTHO05D006473 3.7e-97 359.4 410 52.0
Actinidia14462 Actinidia chinensis HOM05D005292 ORTHO05D006473 9.4e-93 344.7 292 61.6
Aa31LG11G5120 Aethionema arabicum HOM05D005292 ORTHO05D006473 4.9e-73 279.3 155 80.6
MD06G1074900 Malus domestica HOM05D005292 ORTHO05D006473 5.9e-71 272.3 147 83.0
Dinv37766 Davidia involucrata HOM05D005292 ORTHO05D006473 4.0e-67 259.6 246 58.1
Lsat_1_v5_gn_8_156781 Lactuca sativa HOM05D005292 ORTHO05D006473 2.3e-46 190.7 173 59.0
MELO3C005579.2 Cucumis melo HOM05D005292 ORTHO05D006473 6.8e-43 179.1 170 60.6
Lsat_1_v5_gn_2_99060 Lactuca sativa HOM05D005292 ORTHO05D006473 9.9e-42 175.3 120 72.5
Lsat_1_v5_gn_8_88300 Lactuca sativa HOM05D005292 ORTHO05D006473 1.3e-41 174.9 185 50.3
TAR636G3691 Trochodendron aralioides HOM05D005292 ORTHO05D006473 3.8e-41 173.3 129 69.8
SEGI_25328 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 1.1e-37 161.8 94 70.2
Lsat_1_v5_gn_8_99640 Lactuca sativa HOM05D005292 ORTHO05D006473 1.5e-34 151.4 161 50.9
Glyma.05G052200 Glycine max HOM05D005292 ORTHO05D006473 9.9e-34 148.7 137 59.9
Cc08_g13200 Coffea canephora HOM05D005292 ORTHO05D006473 2.1e-28 131.0 66 87.9
SEGI_08273 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 2.8e-28 130.6 84 73.8
CDE11G1060 Ceratophyllum demersum HOM05D005292 ORTHO05D006473 1.8e-27 127.9 66 81.8
MD06G1074800 Malus domestica HOM05D005292 ORTHO05D006473 1.9e-24 117.9 72 80.6
SEGI_15988 Sequoiadendron giganteum HOM05D005292 ORTHO05D006473 1.5e-21 108.2 66 74.2
TWI81G0363 Tripterygium wilfordii HOM05D005292 ORTHO05D006473 1.9e-21 107.8 71 74.6
Eucgr.C02046 Eucalyptus grandis HOM05D005292 ORTHO05D006473 1.4e-16 91.7 48 83.3
vmacro17465 Vaccinium macrocarpon HOM05D002883 ORTHO05D003116 1.2e-15 88.6 66 63.6
Peaxi162Scf00102g01237 Petunia axillaris HOM05D000023 ORTHO05D013611 6.1e-07 59.7 40 65.0


User provided reference genes

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