Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g01213 Nelumbo nucifera HOM05D004961 ORTHO05D006258 7.1e-178 627.1 305 100.0
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 2.0e-140 502.7 285 84.9
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 3.5e-140 501.9 286 84.6
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 6.7e-136 487.6 285 81.4
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 1.6e-129 466.5 286 79.0
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 2.6e-127 459.1 285 75.4
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 4.8e-126 454.9 285 74.7
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 4.8e-126 454.9 285 75.4
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 2.7e-124 449.1 285 73.7
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 7.7e-124 447.6 287 75.6
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 1.0e-123 447.2 285 73.7
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 1.7e-123 446.4 286 74.8
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 3.8e-123 445.3 286 74.5
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 4.2e-122 441.8 287 74.6
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 3.6e-121 438.7 285 72.6
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 6.1e-121 438.0 292 70.9
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 1.8e-120 436.4 285 71.9
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 5.2e-120 434.9 285 72.6
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 1.2e-119 433.7 285 72.6
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 2.6e-119 432.6 285 71.6
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 2.6e-119 432.6 250 84.0
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 4.4e-119 431.8 292 70.5
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 5.7e-119 431.4 285 71.6
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 9.8e-119 430.6 284 71.5
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 1.3e-118 430.3 286 72.4
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 1.7e-118 429.9 285 71.9
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 2.2e-118 429.5 285 70.9
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 3.7e-118 428.7 285 69.8
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 7.0e-117 424.5 285 69.8
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 9.2e-117 424.1 286 70.3
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 3.5e-116 422.2 292 68.5
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 3.5e-116 422.2 292 68.5
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 3.5e-116 422.2 292 68.5
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 3.5e-116 422.2 292 68.5
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.3e-115 420.2 291 67.7
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 2.3e-115 419.5 287 70.0
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.3e-115 419.5 292 68.2
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 2.3e-115 419.5 292 68.2
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 2.9e-115 419.1 282 69.9
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 6.6e-115 417.9 292 67.8
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 1.1e-114 417.2 285 68.8
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 1.1e-114 417.2 293 71.0
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 1.9e-114 416.4 292 67.1
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 5.6e-114 414.8 292 68.2
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 3.6e-113 412.1 288 69.8
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 4.7e-113 411.8 285 70.9
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 6.1e-113 411.4 292 67.5
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 8.9e-112 407.5 293 64.8
Eucgr.D02450 Eucalyptus grandis HOM05D004961 ORTHO05D006258 1.5e-111 406.8 292 66.8
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 2.6e-111 406.0 295 67.8
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 2.6e-111 406.0 295 67.8
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 3.4e-111 405.6 288 67.7
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 5.7e-111 404.8 285 68.4
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 1.7e-110 403.3 293 63.5
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 1.7e-110 403.3 285 64.9
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 2.2e-110 402.9 293 63.5
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 8.3e-110 401.0 285 66.3
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 4.1e-109 398.7 286 64.3
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 7.0e-109 397.9 287 65.2
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 7.0e-109 397.9 287 65.2
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 1.2e-108 397.1 289 65.4
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 1.6e-108 396.7 292 67.8
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 1.6e-108 396.7 285 67.7
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 2.7e-108 396.0 296 64.9
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 2.7e-108 396.0 285 67.7
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 1.3e-107 393.7 285 67.4
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 1.7e-107 393.3 289 68.9
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 2.3e-107 392.9 290 66.9
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 3.0e-107 392.5 261 73.2
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 1.2e-105 387.1 294 69.7
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 2.8e-105 386.0 288 66.7
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 3.6e-105 385.6 294 69.4
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 1.8e-104 383.3 291 64.6
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 2.0e-103 379.8 295 63.4
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 4.4e-103 378.6 286 64.3
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 7.5e-103 377.9 261 70.1
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 2.9e-102 375.9 291 64.3
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 6.4e-102 374.8 286 64.7
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 1.4e-101 373.6 285 62.5
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 3.2e-101 372.5 292 64.7
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 3.2e-101 372.5 287 64.1
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 1.6e-100 370.2 292 64.4
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 2.0e-100 369.8 303 66.0
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 3.5e-100 369.0 268 67.2
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 1.0e-99 367.5 297 63.0
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 3.9e-99 365.5 301 65.1
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 8.6e-99 364.4 285 63.2
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 1.1e-98 364.0 292 61.6
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 1.1e-98 364.0 285 60.4
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 1.1e-98 364.0 285 62.8
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 3.3e-98 362.5 305 59.0
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 5.6e-98 361.7 285 62.1
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 7.3e-98 361.3 286 62.2
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 3.1e-96 355.9 285 62.1
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 1.2e-92 344.0 290 61.0
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 2.7e-92 342.8 290 60.7
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 6.0e-92 341.7 286 59.8
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 2.3e-91 339.7 278 60.4
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 6.6e-91 338.2 293 59.7
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 6.6e-91 338.2 293 59.7
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 6.6e-91 338.2 293 59.7
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 1.1e-90 337.4 283 57.6
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 1.1e-90 337.4 287 55.4
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 3.3e-90 335.9 294 58.8
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 3.3e-90 335.9 276 59.4
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 4.3e-90 335.5 250 63.2
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 6.2e-89 331.6 282 59.9
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 1.3e-86 323.9 286 58.7
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 2.4e-85 319.7 285 57.5
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 9.2e-85 317.8 271 57.9
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 1.7e-83 313.5 285 58.2
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 1.2e-81 307.4 288 56.9
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 1.2e-81 307.4 288 56.9
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 1.2e-81 307.4 288 56.9
Peaxi162Scf00021g01613 Petunia axillaris HOM05D004961 ORTHO05D006258 2.1e-81 306.6 232 65.1
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 8.4e-78 294.7 305 52.8
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 1.9e-77 293.5 286 57.7
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 1.9e-74 283.5 289 54.0
Oeu005782.1 Olea europaea HOM05D004961 ORTHO05D006258 4.3e-74 282.3 239 59.0
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 2.8e-73 279.6 289 54.0
Cpa.g.sc18.116 Carica papaya HOM05D004961 ORTHO05D006258 9.0e-72 274.6 178 71.9
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 4.5e-71 272.3 274 59.1
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 7.6e-71 271.6 300 51.0
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 9.3e-69 264.6 316 47.8
Oeu037913.2 Olea europaea HOM05D004961 ORTHO05D006258 4.0e-64 249.2 235 56.2
unitig_22.g6801 Utricularia gibba HOM05D004961 ORTHO05D006258 2.2e-54 216.9 219 51.1
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 2.9e-54 216.5 300 43.3
Zm00001eb398630 Zea mays HOM05D004961 ORTHO05D006258 6.5e-54 215.3 262 48.1
BcaB02g07397 Brassica carinata HOM05D004961 ORTHO05D006258 1.2e-47 194.5 246 44.7
BcaC07g40608 Brassica carinata HOM05D003135 ORTHO05D006258 1.7e-46 190.7 166 57.2
CDE11G0257 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 8.2e-41 171.8 179 52.0
ATR0582G166 Amborella trichopoda HOM05D004961 ORTHO05D006258 1.4e-40 171.0 297 38.4
SGA_v2.0_scaffold43G16471 Striga asiatica HOM05D004961 ORTHO05D006258 5.9e-31 139.0 191 40.8
GSVIVG01027619001 Vitis vinifera HOM05D004961 ORTHO05D006258 5.2e-27 125.9 92 66.3
BcaNung07139 Brassica carinata HOM05D004961 ORTHO05D006258 4.8e-25 119.4 100 61.0
SMO358G0144 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 1.4e-16 91.3 120 42.5
unitig_22.g6802 Utricularia gibba HOM05D004961 ORTHO05D006258 3.5e-15 86.7 43 86.0
SMO164G0066 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 1.4e-11 74.7 125 34.4
BcaC07g40607 Brassica carinata HOM05D003135 ORTHO05D023343 2.2e-09 67.4 38 76.3
BcaC07g40606 Brassica carinata HOM05D003135 ORTHO05D003715 2.8e-09 67.0 148 34.5


User provided reference genes

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