Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g01189 Nelumbo nucifera HOM05D005851 ORTHO05D007137 2.9e-91 338.6 172 100.0
TAR629G1703 Trochodendron aralioides HOM05D005851 ORTHO05D007137 4.2e-58 228.4 192 65.1
Hma1.2p1_0367F.1_g137205 Hydrangea macrophylla HOM05D005851 ORTHO05D007137 1.1e-45 187.2 200 55.5
Actinidia14484 Actinidia chinensis HOM05D005851 ORTHO05D007137 3.5e-41 172.2 184 55.4
QL12p015621 Quercus lobata HOM05D005851 ORTHO05D007137 3.5e-41 172.2 198 53.0
FAN18G0436 Fragaria x ananassa HOM05D005851 ORTHO05D007137 8.7e-40 167.5 124 69.4
Sc01g0009080 Simmondsia chinensis HOM05D005851 ORTHO05D007137 5.6e-39 164.9 171 59.1
MBI12_g34479_MAGBIO Magnolia biondii HOM05D005851 ORTHO05D007137 7.4e-39 164.5 220 48.6
Sabra01G0087800 Salix brachista HOM05D005851 ORTHO05D007137 1.3e-38 163.7 193 51.8
vmacro00216 Vaccinium macrocarpon HOM05D005851 ORTHO05D007137 1.8e-37 159.8 195 51.8
Peaxi162Scf00620g00019 Petunia axillaris HOM05D005851 ORTHO05D007137 4.0e-37 158.7 146 61.6
GSVIVG01019923001 Vitis vinifera HOM05D005851 ORTHO05D007137 5.3e-37 158.3 138 60.9
FAN13G0774 Fragaria x ananassa HOM05D005851 ORTHO05D007137 1.2e-36 157.1 173 54.9
FvH4_5g00940 Fragaria vesca HOM05D005851 ORTHO05D007137 2.0e-36 156.4 147 59.2
Gorai.008G241100 Gossypium raimondii HOM05D005851 ORTHO05D007137 2.0e-36 156.4 140 60.7
HanXRQChr09g0246661 Helianthus annuus HOM05D005851 ORTHO05D007137 2.0e-36 156.4 192 51.0
Atru.chr9.1473 Acer truncatum HOM05D005851 ORTHO05D007137 3.4e-36 155.6 197 51.3
FAN04G1422 Fragaria x ananassa HOM05D005851 ORTHO05D007137 3.4e-36 155.6 147 59.2
Gohir.D12G225000 Gossypium hirsutum HOM05D005851 ORTHO05D007137 4.5e-36 155.2 136 61.8
Cpa.g.sc29.62 Carica papaya HOM05D005851 ORTHO05D007137 7.6e-36 154.5 188 52.7
Gohir.A12G222500 Gossypium hirsutum HOM05D005851 ORTHO05D007137 7.6e-36 154.5 139 60.4
Duzib205G1229 Durio zibethinus HOM05D005851 ORTHO05D007137 1.0e-35 154.1 170 53.5
RcHm_v2.0_Chr7g0200451 Rosa chinensis HOM05D005851 ORTHO05D007137 2.2e-35 152.9 169 55.0
Potri.001G114800 Populus trichocarpa HOM05D005851 ORTHO05D007137 2.9e-35 152.5 197 49.7
FAN08G3582 Fragaria x ananassa HOM05D005851 ORTHO05D007137 6.5e-35 151.4 149 57.7
Sopen08g028040 Solanum pennellii HOM05D005851 ORTHO05D007137 6.5e-35 151.4 137 62.8
CSS0019536 Camellia sinensis var. sinensis HOM05D005851 ORTHO05D007137 8.4e-35 151.0 156 60.3
Nitab4.5_0001816g0070 Nicotiana tabacum HOM05D005851 ORTHO05D007137 8.4e-35 151.0 161 54.0
CsaV3_3G003320 Cucumis sativus L. HOM05D005851 ORTHO05D007137 1.1e-34 150.6 139 59.7
Solyc08g079680.3 Solanum lycopersicum HOM05D005851 ORTHO05D007137 1.4e-34 150.2 170 54.1
MD06G1068000 Malus domestica HOM05D005851 ORTHO05D007137 2.5e-34 149.4 154 55.8
PGSC0003DMG400003949 Solanum tuberosum HOM05D005851 ORTHO05D007137 2.5e-34 149.4 137 60.6
ECA233G5981 Erigeron canadensis HOM05D005851 ORTHO05D007137 4.2e-34 148.7 138 62.3
Nitab4.5_0001265g0130 Nicotiana tabacum HOM05D005851 ORTHO05D007137 4.2e-34 148.7 161 57.1
Ciclev10024430m.g Citrus clementina HOM05D005851 ORTHO05D007137 5.5e-34 148.3 174 51.1
Aa31LG6G4910 Aethionema arabicum HOM05D000943 ORTHO05D002475 7.1e-34 147.9 169 52.7
Solyc08g007580.4 Solanum lycopersicum HOM05D005851 ORTHO05D007137 7.1e-34 147.9 149 58.4
Oeu064711.1 Olea europaea HOM05D005851 ORTHO05D007137 9.3e-34 147.5 190 51.6
CANSAT95G0001 Cannabis sativa HOM05D005851 ORTHO05D007137 1.2e-33 147.1 171 52.6
Cc08_g13500 Coffea canephora HOM05D005851 ORTHO05D007137 1.2e-33 147.1 201 48.8
EL10Ac5g12653 Beta vulgaris HOM05D005851 ORTHO05D007137 1.6e-33 146.7 180 52.8
THA.LOC104814025 Tarenaya hassleriana HOM05D005851 ORTHO05D007137 2.7e-33 146.0 191 47.6
PGR042G2385 Punica granatum HOM05D005851 ORTHO05D007137 4.6e-33 145.2 161 50.9
Rhsim05G0172500 Rhododendron simsii HOM05D005851 ORTHO05D007137 4.6e-33 145.2 165 55.2
TWI60G0484 Tripterygium wilfordii HOM05D005851 ORTHO05D007137 6.0e-33 144.8 138 59.4
CAN.G630.46 Capsicum annuum HOM05D005851 ORTHO05D007137 7.9e-33 144.4 114 65.8
Nitab4.5_0006122g0020 Nicotiana tabacum HOM05D005851 ORTHO05D007137 7.9e-33 144.4 200 47.5
CiPaw.11G145200 Carya illinoinensis HOM05D005851 ORTHO05D007137 1.8e-32 143.3 190 44.2
PGSC0003DMG400012515 Solanum tuberosum HOM05D005851 ORTHO05D007137 1.8e-32 143.3 174 51.7
AUR62010535 Chenopodium quinoa HOM05D005851 ORTHO05D007137 3.0e-32 142.5 172 53.5
CDE04G1030 Ceratophyllum demersum HOM05D005851 ORTHO05D007137 3.9e-32 142.1 196 49.0
Nitab4.5_0000439g0090 Nicotiana tabacum HOM05D005851 ORTHO05D007137 6.7e-32 141.4 198 49.0
Sopen08g003540 Solanum pennellii HOM05D005851 ORTHO05D007137 8.7e-32 141.0 125 61.6
MELO3C013999.2 Cucumis melo HOM05D005851 ORTHO05D007137 1.1e-31 140.6 146 56.2
A01p14080 Brassica napus HOM05D005851 ORTHO05D007137 1.9e-31 139.8 166 51.2
BraA01t01356Z Brassica rapa HOM05D005851 ORTHO05D007137 1.9e-31 139.8 166 51.2
CAN.G1394.24 Capsicum annuum HOM05D005851 ORTHO05D007137 1.9e-31 139.8 144 54.2
TPR.G19565 Trifolium pratense HOM05D005851 ORTHO05D007137 3.3e-31 139.0 195 46.2
Psat2g180400 Pisum sativum HOM05D005851 ORTHO05D007137 5.7e-31 138.3 176 47.2
arahy.Tifrunner.gnm1.ann1.BUTP6K Arachis hypogaea HOM05D005851 ORTHO05D007137 7.4e-31 137.9 173 49.7
Medtr5g011460 Medicago truncatula HOM05D005851 ORTHO05D007137 7.4e-31 137.9 131 55.7
AUR62017360 Chenopodium quinoa HOM05D005851 ORTHO05D007137 9.7e-31 137.5 169 51.5
SGA_v2.0_scaffold144G35989 Striga asiatica HOM05D005851 ORTHO05D007137 9.7e-31 137.5 189 47.1
BolC1t01669H Brassica oleracea HOM05D005851 ORTHO05D007137 1.6e-30 136.7 187 47.6
arahy.Tifrunner.gnm1.ann1.KEJN3W Arachis hypogaea HOM05D005851 ORTHO05D007137 2.8e-30 136.0 146 54.1
AL7G30690 Arabidopsis lyrata HOM05D005851 ORTHO05D007137 3.7e-30 135.6 143 53.1
BcaC09g51070 Brassica carinata HOM05D005851 ORTHO05D007137 4.8e-30 135.2 187 47.1
BcaC09g51071 Brassica carinata HOM05D005851 ORTHO05D007137 4.8e-30 135.2 187 47.1
C01p17300 Brassica napus HOM05D005851 ORTHO05D007137 4.8e-30 135.2 187 47.1
Thhalv10026321m.g Eutrema salsugineum HOM05D005851 ORTHO05D007137 8.2e-30 134.4 188 46.8
Thecc.03G264400 Theobroma cacao HOM05D005851 ORTHO05D007137 8.2e-30 134.4 114 63.2
Carub.0007s1844 Capsella rubella HOM05D005851 ORTHO05D007137 1.1e-29 134.0 189 45.0
AT4G22830 Arabidopsis thaliana HOM05D005851 ORTHO05D007137 1.4e-29 133.7 190 44.7
BcaNung01022 Brassica carinata HOM05D005851 ORTHO05D007137 3.1e-29 132.5 131 56.5
Lj2g0003035 Lotus japonicus HOM05D005851 ORTHO05D007137 3.1e-29 132.5 101 65.3
Hund14676 Selenicereus undatus HOM05D005851 ORTHO05D007137 5.3e-29 131.7 131 56.5
MSTRG.1924 Avicennia marina HOM05D005851 ORTHO05D007137 6.9e-29 131.3 123 59.3
CARHR229860 Cardamine hirsuta HOM05D005851 ORTHO05D007137 9.0e-29 131.0 189 45.5
ATR0810G218 Amborella trichopoda HOM05D005851 ORTHO05D007137 1.2e-28 130.6 135 56.3
SalBow1G3546 Salvia bowleyana HOM05D005851 ORTHO05D007137 1.5e-28 130.2 124 57.3
Lsat_1_v5_gn_6_10241 Lactuca sativa HOM05D005851 ORTHO05D007137 5.9e-28 128.3 84 78.6
Manes.02G031801 Manihot esculenta HOM05D005851 ORTHO05D007137 1.0e-27 127.5 84 72.6
Os04g0379400 Oryza sativa ssp. japonica HOM05D005851 ORTHO05D007137 1.3e-27 127.1 137 51.1
Phvul.002G151800 Phaseolus vulgaris HOM05D005851 ORTHO05D007137 1.7e-27 126.7 103 63.1
HPP92_025677 Vanilla planifolia HOM05D005851 ORTHO05D007137 2.2e-27 126.3 188 44.7
Glyma.01G213300 Glycine max HOM05D005851 ORTHO05D007137 2.9e-27 125.9 135 54.8
Zm00001eb103020 Zea mays HOM05D005851 ORTHO05D007137 1.9e-26 123.2 103 60.2
Lalb_Chr16g0379871 Lupinus albus HOM05D005851 ORTHO05D007137 5.5e-26 121.7 101 64.4
Sed0022049 Sechium edule HOM05D005851 ORTHO05D007137 5.1e-24 115.2 108 57.4
ClCG00G000050 Citrullus lanatus HOM05D005851 ORTHO05D007137 8.7e-24 114.4 83 68.7
ClCG00G004660 Citrullus lanatus HOM05D005851 ORTHO05D007137 8.7e-24 114.4 80 70.0
ClCG00G005270 Citrullus lanatus HOM05D005851 ORTHO05D007137 8.7e-24 114.4 80 70.0
ClCG10G003300 Citrullus lanatus HOM05D005851 ORTHO05D007137 8.7e-24 114.4 80 70.0
DCAR_000876 Daucus carota HOM05D005851 ORTHO05D007137 2.5e-23 112.8 84 70.2
Eucgr.E00492 Eucalyptus grandis HOM05D005851 ORTHO05D007137 2.5e-23 112.8 73 78.1
Pp3c10_11850 Physcomitrium patens HOM05D005851 ORTHO05D007137 3.3e-23 112.5 105 57.1
Dinv39056 Davidia involucrata HOM05D005851 ORTHO05D007137 4.8e-22 108.6 109 60.6
Pp3c12_9510 Physcomitrium patens HOM05D005851 ORTHO05D007137 1.4e-21 107.1 130 49.2
PSO782G0540 Papaver somniferum HOM05D005851 ORTHO05D007137 3.1e-21 105.9 84 63.1
Mapoly0066s0013 Marchantia polymorpha HOM05D005851 ORTHO05D007137 5.3e-21 105.1 101 52.5
Migut.E01010 Erythranthe guttata HOM05D005851 ORTHO05D007137 6.9e-21 104.8 132 50.0
Ah.02g116130 Amaranthus hybridus HOM05D005851 ORTHO05D007137 1.2e-20 104.0 100 58.0
Ca_06681_v3 Cicer arietinum L. HOM05D000943 ORTHO05D002475 2.6e-20 102.8 52 84.6
Glyma.11G028600 Glycine max HOM05D005851 ORTHO05D007137 3.4e-20 102.4 116 54.3
SMO364G0744 Selaginella moellendorffii HOM05D005851 ORTHO05D007137 5.9e-20 101.7 116 49.1
Cre12.g555400 Chlamydomonas reinhardtii HOM05D005851 ORTHO05D007137 2.9e-19 99.4 99 51.5
VMungo1215G2211 Vigna mungo HOM05D005851 ORTHO05D007137 5.5e-18 95.1 58 74.1
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 7.2e-18 94.7 127 44.9
unitig_699.g19746 Utricularia gibba HOM05D002021 ORTHO05D002077 1.6e-17 93.6 77 63.6
SEGI_29987 Sequoiadendron giganteum HOM05D005851 ORTHO05D007137 2.1e-17 93.2 83 61.4
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 4.7e-17 92.0 94 48.9
COL.COLO4_23838 Corchorus olitorius HOM05D005851 ORTHO05D007137 5.1e-16 88.6 82 59.8
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 4.4e-15 85.5 128 43.0
COL.COLO4_23837 Corchorus olitorius HOM05D005851 ORTHO05D007137 2.2e-14 83.2 96 51.0
Aqoxy5G03942 Aquilegia oxysepala HOM05D001344 ORTHO05D002590 1.4e-13 80.5 61 67.2
Lj2C204G6 Lonicera japonica HOM05D005851 ORTHO05D007137 1.8e-13 80.1 112 49.1
Cfa020517 Carpinus fangiana HOM05D005851 ORTHO05D007137 1.2e-12 77.4 116 43.1
MCO14G294 Micromonas commoda HOM05D005851 ORTHO05D007137 3.4e-12 75.9 93 41.9
BolC3t15330H Brassica oleracea HOM05D005851 ORTHO05D007137 5.9e-12 75.1 49 75.5
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 1.1e-10 70.9 126 38.9
BcaC09g48268 Brassica carinata HOM05D002423 ORTHO05D007137 2.3e-08 63.2 74 52.7
C01p52310 Brassica napus HOM05D002423 ORTHO05D007137 2.3e-08 63.2 74 52.7
Haze_09033 Corylus avellana HOM05D000491 ORTHO05D000359 1.1e-07 60.8 101 40.6
arahy.Tifrunner.gnm1.ann1.UAJL6I Arachis hypogaea HOM05D005851 ORTHO05D007137 2.0e-07 60.1 89 48.3
Lj2A204T50 Lonicera japonica HOM05D005851 ORTHO05D007137 1.3e-06 57.4 24 100.0
arahy.Tifrunner.gnm1.ann1.54ECHP Arachis hypogaea HOM05D005851 ORTHO05D007137 8.2e-06 54.7 36 72.2
arahy.Tifrunner.gnm1.ann1.CS7A8V Arachis hypogaea HOM05D005851 ORTHO05D007137 8.2e-06 54.7 36 72.2
arahy.Tifrunner.gnm1.ann1.IPBJ4Y Arachis hypogaea HOM05D005851 ORTHO05D007137 8.2e-06 54.7 36 72.2
arahy.Tifrunner.gnm1.ann1.Q2BFW3 Arachis hypogaea HOM05D005851 ORTHO05D007137 8.2e-06 54.7 36 72.2


User provided reference genes

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