Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g01184 Nelumbo nucifera HOM05D007548 ORTHO05D009527 1.9e-168 595.9 327 100.0
Nn4g26440 Nelumbo nucifera HOM05D007548 ORTHO05D009527 3.8e-52 209.5 278 52.5
TAR636G2044 Trochodendron aralioides HOM05D007548 ORTHO05D009527 1.1e-43 181.4 279 47.7
Haze_13820 Corylus avellana HOM05D007548 ORTHO05D009527 4.4e-40 169.5 287 45.6
Atru.chr1.619 Acer truncatum HOM05D007548 ORTHO05D009527 1.0e-36 158.3 287 42.5
TWI39G0023 Tripterygium wilfordii HOM05D007548 ORTHO05D009527 2.9e-36 156.8 281 44.5
Oeu021734.1 Olea europaea HOM05D007548 ORTHO05D009527 1.9e-35 154.1 274 44.2
Duzib068G0425 Durio zibethinus HOM05D007548 ORTHO05D009527 5.5e-35 152.5 282 41.5
Oeu021733.1 Olea europaea HOM05D007548 ORTHO05D009527 7.2e-35 152.1 274 43.8
Ciclev10007148m.g Citrus clementina HOM05D007548 ORTHO05D009527 3.6e-34 149.8 280 43.2
Prupe.2G283000 Prunus persica HOM05D007548 ORTHO05D009527 6.1e-34 149.1 291 42.3
Thecc.03G162900 Theobroma cacao HOM05D007548 ORTHO05D009527 1.0e-33 148.3 284 41.9
Cc02_g03840 Coffea canephora HOM05D007548 ORTHO05D009527 3.0e-33 146.7 282 43.3
CiPaw.03G097400 Carya illinoinensis HOM05D007548 ORTHO05D009527 5.2e-33 146.0 284 44.0
Potri.015G132000 Populus trichocarpa HOM05D007548 ORTHO05D009527 4.4e-32 142.9 280 43.2
Cfa008236 Carpinus fangiana HOM05D007548 ORTHO05D009527 2.8e-31 140.2 285 41.4
RcHm_v2.0_Chr1g0375221 Rosa chinensis HOM05D007548 ORTHO05D009527 1.8e-30 137.5 280 42.5
FvH4_7g28270 Fragaria vesca HOM05D007548 ORTHO05D009527 4.1e-30 136.3 284 40.5
FAN06G3028 Fragaria x ananassa HOM05D007548 ORTHO05D009527 4.1e-30 136.3 284 40.5
FAN06G3476 Fragaria x ananassa HOM05D007548 ORTHO05D009527 4.1e-30 136.3 284 40.5
FAN03G1824 Fragaria x ananassa HOM05D007548 ORTHO05D009527 7.0e-30 135.6 285 40.7
FAN03G2953 Fragaria x ananassa HOM05D007548 ORTHO05D009527 9.1e-30 135.2 281 41.3
Manes.06G138600 Manihot esculenta HOM05D007548 ORTHO05D009527 1.0e-28 131.7 284 39.8
Actinidia13550 Actinidia chinensis HOM05D007548 ORTHO05D009527 1.7e-28 131.0 282 37.9
Dinv07997 Davidia involucrata HOM05D007548 ORTHO05D009527 2.9e-28 130.2 260 41.9
COL.COLO4_14190 Corchorus olitorius HOM05D007548 ORTHO05D009527 1.5e-27 127.9 224 45.1
Nitab4.5_0008495g0030 Nicotiana tabacum HOM05D007548 ORTHO05D009527 1.9e-27 127.5 287 39.7
PSO782G0883 Papaver somniferum HOM05D007548 ORTHO05D009527 1.9e-27 127.5 305 39.7
Gohir.A12G263800 Gossypium hirsutum HOM05D007548 ORTHO05D009527 2.5e-27 127.1 287 39.7
CANSAT80G1542 Cannabis sativa HOM05D007548 ORTHO05D009527 5.5e-27 125.9 277 41.2
Eucgr.K00142 Eucalyptus grandis HOM05D007548 ORTHO05D009527 1.2e-26 124.8 285 40.4
Gorai.008G283300 Gossypium raimondii HOM05D007548 ORTHO05D009527 2.1e-26 124.0 287 39.7
Lj8A35G80 Lonicera japonica HOM05D007548 ORTHO05D009527 6.1e-26 122.5 298 40.3
DCAR_018129 Daucus carota HOM05D007548 ORTHO05D009527 8.0e-26 122.1 291 40.5
Gohir.D12G264100 Gossypium hirsutum HOM05D007548 ORTHO05D009527 1.0e-25 121.7 287 35.9
Rhsim03G0172300 Rhododendron simsii HOM05D007548 ORTHO05D009527 1.0e-25 121.7 273 40.3
Peaxi162Scf00192g00096 Petunia axillaris HOM05D007548 ORTHO05D009527 3.0e-25 120.2 285 39.6
Migut.F00422 Erythranthe guttata HOM05D007548 ORTHO05D009527 8.8e-25 118.6 279 38.7
Actinidia25043 Actinidia chinensis HOM05D007548 ORTHO05D009527 2.0e-24 117.5 279 38.0
Manes.14G032600 Manihot esculenta HOM05D007548 ORTHO05D009527 1.3e-23 114.8 281 33.5
FAN01G2764 Fragaria x ananassa HOM05D007548 ORTHO05D009527 2.2e-23 114.0 292 38.0
Nitab4.5_0000072g0300 Nicotiana tabacum HOM05D007548 ORTHO05D009527 2.8e-23 113.6 285 38.2
MSTRG.27166 Avicennia marina HOM05D007548 ORTHO05D009527 4.8e-23 112.8 277 37.5
Sopen03g003070 Solanum pennellii HOM05D007548 ORTHO05D009527 4.8e-23 112.8 285 37.9
Glyma.10G242400 Glycine max HOM05D007548 ORTHO05D009527 8.3e-23 112.1 276 38.8
SalBow4G1498 Salvia bowleyana HOM05D007548 ORTHO05D009527 4.1e-22 109.8 277 38.3
Glyma.20G151700 Glycine max HOM05D007548 ORTHO05D009527 1.2e-21 108.2 277 38.6
VMungo0720G2396 Vigna mungo HOM05D007548 ORTHO05D009527 1.2e-21 108.2 273 37.7
SalBow4G2379 Salvia bowleyana HOM05D007548 ORTHO05D009527 2.7e-21 107.1 271 38.4
Aa31LG3G8110 Aethionema arabicum HOM05D007548 ORTHO05D009527 7.7e-21 105.5 316 34.5
Lj5g0018367 Lotus japonicus HOM05D007548 ORTHO05D009527 6.5e-20 102.4 324 38.0
PSO478G0091 Papaver somniferum HOM05D007548 ORTHO05D009527 5.5e-19 99.4 285 36.8
PGSC0003DMG400031012 Solanum tuberosum HOM05D007548 ORTHO05D009527 1.0e-17 95.1 285 36.5
EL10Ac3g05788 Beta vulgaris HOM05D007548 ORTHO05D009527 6.8e-17 92.4 287 33.8
Cpa.g.sc13.212 Carica papaya HOM05D007548 ORTHO05D009527 6.8e-17 92.4 298 34.6
Solyc03g007080.4 Solanum lycopersicum HOM05D007548 ORTHO05D009527 6.8e-17 92.4 177 38.4
unitig_37.g12505 Utricularia gibba HOM05D007548 ORTHO05D009527 1.5e-16 91.3 271 35.8
Medtr1g102510 Medicago truncatula HOM05D007548 ORTHO05D009527 4.9e-15 86.3 274 31.0
AL8G25930 Arabidopsis lyrata HOM05D007548 ORTHO05D009527 7.0e-14 82.4 314 33.4
PGR142G1046 Punica granatum HOM05D007548 ORTHO05D009527 7.0e-14 82.4 259 31.7
THA.LOC104798720 Tarenaya hassleriana HOM05D007548 ORTHO05D009527 7.0e-14 82.4 286 35.0
Aqoxy7G00579 Aquilegia oxysepala HOM05D007548 ORTHO05D009527 9.1e-14 82.0 304 30.9
Thhalv10014011m.g Eutrema salsugineum HOM05D007548 ORTHO05D009527 9.1e-14 82.0 300 32.0
Carub.0008s1170 Capsella rubella HOM05D007548 ORTHO05D009527 2.0e-13 80.9 303 31.4
AUR62035044 Chenopodium quinoa HOM05D007548 ORTHO05D009527 3.5e-13 80.1 287 32.4
Ah.07g208330 Amaranthus hybridus HOM05D007548 ORTHO05D009527 7.7e-13 79.0 291 34.4
CARHR264530 Cardamine hirsuta HOM05D007548 ORTHO05D009527 7.7e-13 79.0 298 31.2
AUR62016096 Chenopodium quinoa HOM05D007548 ORTHO05D009527 7.7e-13 79.0 286 32.2
Phvul.007G063100 Phaseolus vulgaris HOM05D007548 ORTHO05D009527 1.1e-11 75.1 275 32.4
AT5G51680 Arabidopsis thaliana HOM05D007548 ORTHO05D009527 3.3e-11 73.6 311 32.8
HanXRQChr05g0141371 Helianthus annuus HOM05D007548 ORTHO05D009527 2.8e-10 70.5 299 29.4
MBI17_g42494_MAGBIO Magnolia biondii HOM05D007548 ORTHO05D009527 2.8e-10 70.5 157 36.9
GSVIVG01018495001 Vitis vinifera HOM05D007548 ORTHO05D009527 3.6e-10 70.1 130 38.5
arahy.Tifrunner.gnm1.ann1.WA56KQ Arachis hypogaea HOM05D001870 ORTHO05D001797 1.0e-09 68.6 281 30.2
Sc25g0000160 Simmondsia chinensis HOM05D007548 ORTHO05D009527 1.0e-09 68.6 291 33.7
SGA_v2.0_scaffold2G01130 Striga asiatica HOM05D007548 ORTHO05D009527 1.0e-09 68.6 267 33.7
arahy.Tifrunner.gnm1.ann1.J4U887 Arachis hypogaea HOM05D001870 ORTHO05D001797 2.3e-09 67.4 280 31.1
Psat6g202320 Pisum sativum HOM05D007548 ORTHO05D009527 3.0e-09 67.0 279 30.8
Lsat_1_v5_gn_8_8041 Lactuca sativa HOM05D007548 ORTHO05D009527 6.8e-09 65.9 289 29.8
Ah.13g067520 Amaranthus hybridus HOM05D007548 ORTHO05D009527 1.2e-08 65.1 262 30.5
BcaC04g20644 Brassica carinata HOM05D007548 ORTHO05D009527 1.2e-08 65.1 297 29.0
C09p41110 Brassica napus HOM05D007548 ORTHO05D009527 1.2e-08 65.1 297 29.0
BolC9t56989H Brassica oleracea HOM05D007548 ORTHO05D009527 1.2e-08 65.1 297 29.0
BraA10t43031Z Brassica rapa HOM05D007548 ORTHO05D009527 2.0e-08 64.3 323 29.4
BcaB08g35518 Brassica carinata HOM05D007548 ORTHO05D009527 5.7e-08 62.8 296 29.7
A10p09560 Brassica napus HOM05D007548 ORTHO05D009527 4.9e-07 59.7 296 28.4
FAN10G1395 Fragaria x ananassa HOM05D007548 ORTHO05D009527 6.4e-07 59.3 191 35.6
Sp6g13900 Schrenkiella parvula HOM05D007548 ORTHO05D009527 4.1e-06 56.6 164 33.5
Lalb_Chr21g0304861 Lupinus albus HOM05D007548 ORTHO05D009527 7.0e-06 55.8 270 31.5


User provided reference genes

Program Settings