Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g01176 Nelumbo nucifera HOM05D006795 ORTHO05D008573 3.4e-137 491.5 225 100.0
Dinv07998 Davidia involucrata HOM05D006795 ORTHO05D008573 8.6e-104 380.6 225 74.2
TAR636G0045 Trochodendron aralioides HOM05D006795 ORTHO05D008573 1.1e-103 380.2 267 67.4
Aqoxy7G00570 Aquilegia oxysepala HOM05D006795 ORTHO05D008573 1.0e-101 373.6 225 77.3
CSS0024840 Camellia sinensis var. sinensis HOM05D006795 ORTHO05D008573 4.0e-101 371.7 225 73.8
Actinidia31794 Actinidia chinensis HOM05D006795 ORTHO05D008573 1.3e-99 366.7 225 73.3
PSO478G2429 Papaver somniferum HOM05D006795 ORTHO05D008573 4.9e-99 364.8 225 72.9
PSO782G4689 Papaver somniferum HOM05D006795 ORTHO05D008573 6.4e-99 364.4 225 72.9
CiPaw.03G097900 Carya illinoinensis HOM05D006795 ORTHO05D008573 2.9e-96 355.5 222 72.1
QL12p039358 Quercus lobata HOM05D006795 ORTHO05D008573 3.9e-96 355.1 222 73.0
vmacro06760 Vaccinium macrocarpon HOM05D006795 ORTHO05D008573 6.6e-96 354.4 225 72.0
Cpa.g.sc3.258 Carica papaya HOM05D006795 ORTHO05D008573 2.8e-94 349.0 222 73.0
Haze_13816 Corylus avellana HOM05D006795 ORTHO05D008573 3.6e-94 348.6 221 71.0
MD01G1187300 Malus domestica HOM05D006795 ORTHO05D008573 8.0e-94 347.4 219 70.3
Peaxi162Scf00132g00138 Petunia axillaris HOM05D006795 ORTHO05D008573 1.0e-93 347.1 235 66.4
CANSAT21G1655 Cannabis sativa HOM05D006795 ORTHO05D008573 3.1e-93 345.5 225 68.9
FvH4_7g28300 Fragaria vesca HOM05D006795 ORTHO05D008573 8.9e-93 344.0 222 68.9
Lj5g0021204 Lotus japonicus HOM05D006795 ORTHO05D008573 8.9e-93 344.0 227 68.3
FAN06G0634 Fragaria x ananassa HOM05D001585 ORTHO05D001677 1.2e-92 343.6 222 69.4
FAN06G3003 Fragaria x ananassa HOM05D001585 ORTHO05D001677 1.2e-92 343.6 222 69.4
PGR042G2278 Punica granatum HOM05D006795 ORTHO05D008573 1.2e-92 343.6 224 69.6
RcHm_v2.0_Chr1g0375271 Rosa chinensis HOM05D006795 ORTHO05D008573 1.5e-92 343.2 219 70.3
CAN.G1187.5 Capsicum annuum HOM05D006795 ORTHO05D008573 2.6e-92 342.4 225 68.4
COL.COLO4_14197 Corchorus olitorius HOM05D006795 ORTHO05D008573 3.4e-92 342.0 226 69.0
MD07G1259600 Malus domestica HOM05D006795 ORTHO05D008573 5.8e-92 341.3 220 69.1
Prupe.2G283700 Prunus persica HOM05D006795 ORTHO05D008573 1.7e-91 339.7 218 71.1
Sc13g0008130 Simmondsia chinensis HOM05D006795 ORTHO05D008573 3.7e-91 338.6 229 69.0
Eucgr.A02872 Eucalyptus grandis HOM05D006795 ORTHO05D008573 4.9e-91 338.2 226 68.1
Potri.015G132300 Populus trichocarpa HOM05D006795 ORTHO05D008573 6.4e-91 337.8 224 67.9
Thecc.03G163300 Theobroma cacao HOM05D006795 ORTHO05D008573 6.4e-91 337.8 226 69.9
TWI39G0269 Tripterygium wilfordii HOM05D006795 ORTHO05D008573 6.4e-91 337.8 223 68.6
Cc02_g03780 Coffea canephora HOM05D006795 ORTHO05D008573 2.4e-90 335.9 217 67.7
BcaC03g14579 Brassica carinata HOM05D006795 ORTHO05D008573 3.2e-90 335.5 216 68.5
Lj8A35T83 Lonicera japonica HOM05D006795 ORTHO05D008573 3.2e-90 335.5 221 67.9
Duzib068G1417 Durio zibethinus HOM05D006795 ORTHO05D008573 4.1e-90 335.1 226 70.8
Nitab4.5_0001589g0020 Nicotiana tabacum HOM05D006795 ORTHO05D008573 5.4e-90 334.7 221 67.0
FAN10G2418 Fragaria x ananassa HOM05D006795 ORTHO05D008573 1.2e-89 333.6 220 69.1
Hund04657 Selenicereus undatus HOM05D006795 ORTHO05D008573 1.2e-89 333.6 229 69.0
Solyc11g072290.3 Solanum lycopersicum HOM05D006795 ORTHO05D008573 1.2e-89 333.6 228 67.5
Sabra15G0145100 Salix brachista HOM05D006795 ORTHO05D008573 2.0e-89 332.8 226 67.7
ECA238G4708 Erigeron canadensis HOM05D006795 ORTHO05D008573 2.7e-89 332.4 229 64.6
Lsat_1_v5_gn_2_129741 Lactuca sativa HOM05D006795 ORTHO05D008573 3.5e-89 332.0 220 67.7
C02p20240 Brassica napus HOM05D006795 ORTHO05D008573 4.6e-89 331.6 216 68.1
BraA02t06278Z Brassica rapa HOM05D006795 ORTHO05D008573 6.0e-89 331.3 221 66.5
Nitab4.5_0000205g0150 Nicotiana tabacum HOM05D006795 ORTHO05D008573 7.8e-89 330.9 222 66.7
A02p12140 Brassica napus HOM05D006795 ORTHO05D008573 1.0e-88 330.5 217 67.3
BolC2t08156H Brassica oleracea HOM05D006795 ORTHO05D008573 1.0e-88 330.5 221 66.1
ClCG11G008970 Citrullus lanatus HOM05D006795 ORTHO05D008573 1.0e-88 330.5 221 69.2
AUR62016086 Chenopodium quinoa HOM05D006795 ORTHO05D008573 1.3e-88 330.1 228 67.1
Manes.06G149000 Manihot esculenta HOM05D006795 ORTHO05D008573 2.3e-88 329.3 222 67.6
arahy.Tifrunner.gnm1.ann1.ATT3CU Arachis hypogaea HOM05D006795 ORTHO05D008573 3.0e-88 328.9 230 67.4
arahy.Tifrunner.gnm1.ann1.939HGU Arachis hypogaea HOM05D006795 ORTHO05D008573 3.9e-88 328.6 229 66.8
Thhalv10014608m.g Eutrema salsugineum HOM05D006795 ORTHO05D008573 5.0e-88 328.2 218 67.9
Rhsim03G0172800 Rhododendron simsii HOM05D006795 ORTHO05D008573 6.6e-88 327.8 295 56.3
Ciclev10005807m.g Citrus clementina HOM05D006795 ORTHO05D008573 8.6e-88 327.4 222 67.6
Glyma.10G242200 Glycine max HOM05D006795 ORTHO05D008573 3.3e-87 325.5 228 67.5
Medtr1g102470 Medicago truncatula HOM05D006795 ORTHO05D008573 3.3e-87 325.5 222 68.9
HPP92_005470 Vanilla planifolia HOM05D006795 ORTHO05D008573 5.6e-87 324.7 222 67.1
Aa31LG3G8130 Aethionema arabicum HOM05D006795 ORTHO05D008573 7.3e-87 324.3 216 64.4
THA.LOC104825075 Tarenaya hassleriana HOM05D006795 ORTHO05D008573 1.2e-86 323.6 221 66.1
Glyma.20G151900 Glycine max HOM05D006795 ORTHO05D008573 2.8e-86 322.4 229 66.8
BcaB08g35519 Brassica carinata HOM05D006795 ORTHO05D008573 8.1e-86 320.9 224 65.6
Atru.chr1.614 Acer truncatum HOM05D006795 ORTHO05D008573 1.1e-85 320.5 222 67.1
Lalb_Chr02g0140771 Lupinus albus HOM05D006795 ORTHO05D008573 1.8e-85 319.7 224 64.7
unitig_0.g1164 Utricularia gibba HOM05D006795 ORTHO05D008573 2.3e-85 319.3 223 65.9
Gohir.A09G178600 Gossypium hirsutum HOM05D006795 ORTHO05D008573 3.1e-85 318.9 227 66.1
Gohir.D09G174200 Gossypium hirsutum HOM05D006795 ORTHO05D008573 3.1e-85 318.9 227 66.1
Migut.F00416 Erythranthe guttata HOM05D006795 ORTHO05D008573 5.2e-85 318.2 224 63.8
BraA10t43032Z Brassica rapa HOM05D006795 ORTHO05D008573 1.5e-84 316.6 227 65.2
A10p09570 Brassica napus HOM05D006795 ORTHO05D008573 7.5e-84 314.3 227 64.3
TPR.G26107 Trifolium pratense HOM05D006795 ORTHO05D008573 9.8e-84 313.9 225 65.8
EL10Ac3g05773 Beta vulgaris HOM05D006795 ORTHO05D008573 1.3e-83 313.5 224 66.5
CsaV3_2G010830 Cucumis sativus L. HOM05D006795 ORTHO05D008573 1.7e-83 313.2 218 65.6
AUR62035033 Chenopodium quinoa HOM05D006795 ORTHO05D008573 4.9e-83 311.6 245 61.2
GSVIVG01018489001 Vitis vinifera HOM05D006795 ORTHO05D008573 1.9e-82 309.7 191 73.3
Mapoly0020s0061 Marchantia polymorpha HOM05D006795 ORTHO05D008573 4.1e-82 308.5 217 65.4
SEGI_28069 Sequoiadendron giganteum HOM05D006795 ORTHO05D008573 5.4e-82 308.1 221 65.2
ATR1145G092 Amborella trichopoda HOM05D006795 ORTHO05D008573 2.1e-81 306.2 231 61.0
Actinidia03085 Actinidia chinensis HOM05D006795 ORTHO05D008573 6.6e-80 301.2 185 72.4
FAN01G1007 Fragaria x ananassa HOM05D006795 ORTHO05D008573 2.5e-79 299.3 236 60.2
Oeu021736.1 Olea europaea HOM05D006795 ORTHO05D008573 3.3e-79 298.9 187 72.7
FAN03G1183 Fragaria x ananassa HOM05D001585 ORTHO05D001677 4.3e-79 298.5 191 71.7
FAN03G1859 Fragaria x ananassa HOM05D001585 ORTHO05D001677 5.6e-79 298.1 191 71.7
Sed0014900 Sechium edule HOM05D006795 ORTHO05D008573 3.1e-77 292.4 263 53.6
Manes.06G139000 Manihot esculenta HOM05D006795 ORTHO05D008573 4.0e-77 292.0 193 68.9
MSTRG.119 Avicennia marina HOM05D006795 ORTHO05D008573 5.2e-77 291.6 188 68.6
SGA_v2.0_scaffold2G01112 Striga asiatica HOM05D006795 ORTHO05D008573 1.2e-76 290.4 192 69.3
Oeu042417.2 Olea europaea HOM05D006795 ORTHO05D008573 3.2e-74 282.3 223 64.1
TAR629G1442 Trochodendron aralioides HOM05D006795 ORTHO05D008573 3.2e-74 282.3 201 67.7
CSS0028605 Camellia sinensis var. sinensis HOM05D006795 ORTHO05D008573 1.2e-73 280.4 225 60.9
Ah.13g067570 Amaranthus hybridus HOM05D006795 ORTHO05D008573 4.6e-73 278.5 189 69.8
Sopen11g029960 Solanum pennellii HOM05D006795 ORTHO05D008573 1.0e-72 277.3 191 67.0
BcaB05g23990 Brassica carinata HOM05D006795 ORTHO05D008573 1.3e-72 276.9 190 66.3
CDE06G1038 Ceratophyllum demersum HOM05D006795 ORTHO05D008573 3.9e-72 275.4 187 64.7
Gorai.006G196200 Gossypium raimondii HOM05D006795 ORTHO05D008573 6.6e-72 274.6 194 66.0
Os02g0535400 Oryza sativa ssp. japonica HOM05D006795 ORTHO05D008573 4.3e-71 271.9 189 68.3
CARHR264540 Cardamine hirsuta HOM05D006795 ORTHO05D008573 2.8e-70 269.2 186 64.0
Sp6g13920 Schrenkiella parvula HOM05D006795 ORTHO05D008573 4.7e-70 268.5 183 66.1
SMO146G0237 Selaginella moellendorffii HOM05D006795 ORTHO05D008573 4.7e-70 268.5 216 57.9
SalBow4G0392 Salvia bowleyana HOM05D006795 ORTHO05D008573 1.1e-69 267.3 220 58.2
SalBow4G1076 Salvia bowleyana HOM05D006795 ORTHO05D008573 1.1e-69 267.3 220 58.2
AT5G51700 Arabidopsis thaliana HOM05D006795 ORTHO05D008573 2.4e-69 266.2 182 63.7
Zm00001eb242890 Zea mays HOM05D006795 ORTHO05D008573 1.2e-68 263.8 189 66.1
Psat6g202120 Pisum sativum HOM05D006795 ORTHO05D008573 2.6e-68 262.7 189 64.6
Psat6g202920 Pisum sativum HOM05D006795 ORTHO05D008573 2.6e-68 262.7 189 64.6
AL8G25950 Arabidopsis lyrata HOM05D006795 ORTHO05D008573 3.4e-68 262.3 182 63.2
Carub.0008s1172 Capsella rubella HOM05D006795 ORTHO05D008573 4.4e-68 261.9 182 63.2
Pp3c14_10540 Physcomitrium patens HOM05D006795 ORTHO05D008573 7.8e-65 251.1 195 59.0
Ca_10834_v3 Cicer arietinum L. HOM05D006795 ORTHO05D008573 3.3e-63 245.7 218 57.3
CBR_g32001 Chara braunii HOM05D006795 ORTHO05D008573 9.0e-61 237.7 198 56.6
MCO02G265 Micromonas commoda HOM05D006795 ORTHO05D008573 1.7e-56 223.4 218 47.2
VMungo0720G2517 Vigna mungo HOM05D006795 ORTHO05D008573 3.8e-51 205.7 153 62.1
Phvul.007G063300 Phaseolus vulgaris HOM05D006795 ORTHO05D008573 1.2e-49 200.7 142 64.8
PGSC0003DMG400027380 Solanum tuberosum HOM05D006795 ORTHO05D008573 3.5e-49 199.1 131 67.9
Zm00001eb181460 Zea mays HOM05D006795 ORTHO05D008573 5.7e-39 165.2 107 66.4
MELO3C008527.2 Cucumis melo HOM05D006795 ORTHO05D008573 2.7e-33 146.4 72 75.0
SMO146G0045 Selaginella moellendorffii HOM05D006795 ORTHO05D008573 1.6e-17 94.0 195 32.8
PRCOL_00002330 Prasinoderma coloniale HOM05D006795 ORTHO05D008573 9.4e-10 68.2 62 41.9


User provided reference genes

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