Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g01167 Nelumbo nucifera HOM05D003867 ORTHO05D004593 4.8e-31 137.1 66 100.0
Nn1g01168 Nelumbo nucifera HOM05D003867 ORTHO05D004593 4.8e-31 137.1 66 100.0
MSTRG.7988 Avicennia marina HOM05D003867 ORTHO05D004593 1.5e-27 125.6 65 93.8
Dinv37748 Davidia involucrata HOM05D003867 ORTHO05D004593 1.5e-27 125.6 65 93.8
Gohir.A12G147700 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.5e-27 125.6 65 93.8
Nn3g16522 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.5e-27 125.6 65 93.8
Nn7g37842 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.5e-27 125.6 65 93.8
Atru.chr11.2286 Acer truncatum HOM05D003867 ORTHO05D004593 1.9e-27 125.2 65 92.3
ATR0665G595 Amborella trichopoda HOM05D003867 ORTHO05D004593 1.9e-27 125.2 65 92.3
Aqoxy3G01483 Aquilegia oxysepala HOM05D003867 ORTHO05D004593 1.9e-27 125.2 65 92.3
CSS0008021 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 1.9e-27 125.2 65 92.3
CSS0021164 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 1.9e-27 125.2 65 92.3
Cpa.g.sc257.6 Carica papaya HOM05D003867 ORTHO05D004593 1.9e-27 125.2 65 92.3
CiPaw.05G113400 Carya illinoinensis HOM05D003867 ORTHO05D004593 1.9e-27 125.2 65 92.3
CiPaw.06G100100 Carya illinoinensis HOM05D003867 ORTHO05D004593 1.9e-27 125.2 65 92.3
Ciclev10033600m.g Citrus clementina HOM05D003867 ORTHO05D004593 1.9e-27 125.2 65 92.3
COL.COLO4_12823 Corchorus olitorius HOM05D003867 ORTHO05D004593 1.9e-27 125.2 65 92.3
Haze_12379 Corylus avellana HOM05D003867 ORTHO05D004593 1.9e-27 125.2 65 92.3
Duzib248G0225 Durio zibethinus HOM05D003867 ORTHO05D004593 1.9e-27 125.2 65 92.3
Duzib251G0884 Durio zibethinus HOM05D003867 ORTHO05D004593 1.9e-27 125.2 65 92.3
Duzib268G1394 Durio zibethinus HOM05D003867 ORTHO05D004593 1.9e-27 125.2 65 92.3
Eucgr.H04659 Eucalyptus grandis HOM05D003867 ORTHO05D004593 1.9e-27 125.2 65 92.3
Gohir.A07G097600 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.9e-27 125.2 65 92.3
Gohir.D07G101900 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.9e-27 125.2 65 92.3
Gohir.D12G152000 Gossypium hirsutum HOM05D003867 ORTHO05D004593 1.9e-27 125.2 65 92.3
Gorai.001G109800 Gossypium raimondii HOM05D003867 ORTHO05D004593 1.9e-27 125.2 65 92.3
Gorai.008G164400 Gossypium raimondii HOM05D003867 ORTHO05D004593 1.9e-27 125.2 65 92.3
Lj6g0022289 Lotus japonicus HOM05D003867 ORTHO05D004593 1.9e-27 125.2 65 92.3
Manes.12G014300 Manihot esculenta HOM05D003867 ORTHO05D004593 1.9e-27 125.2 65 92.3
Os07g0645400 Oryza sativa ssp. japonica HOM05D003867 ORTHO05D004593 1.9e-27 125.2 65 92.3
Potri.010G057400 Populus trichocarpa HOM05D003867 ORTHO05D004593 1.9e-27 125.2 65 92.3
PGR119G1061 Punica granatum HOM05D003867 ORTHO05D004593 1.9e-27 125.2 65 92.3
QL03p054504 Quercus lobata HOM05D003867 ORTHO05D004593 1.9e-27 125.2 65 92.3
Sabra10G0047900 Salix brachista HOM05D003867 ORTHO05D004593 1.9e-27 125.2 65 92.3
TWI36G0688 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 1.9e-27 125.2 65 92.3
TWI75G1178 Tripterygium wilfordii HOM05D003867 ORTHO05D004593 1.9e-27 125.2 65 92.3
TAR374G1237 Trochodendron aralioides HOM05D003867 ORTHO05D004593 1.9e-27 125.2 65 92.3
TAR629G2231 Trochodendron aralioides HOM05D003867 ORTHO05D004593 1.9e-27 125.2 65 92.3
ClCG02G006860 Citrullus lanatus HOM05D003867 ORTHO05D004593 2.5e-27 124.8 65 92.3
Cc11_g16710 Coffea canephora HOM05D003867 ORTHO05D004593 2.5e-27 124.8 65 90.8
MELO3C009702.2 Cucumis melo HOM05D003867 ORTHO05D004593 2.5e-27 124.8 65 92.3
CsaV3_3G039600 Cucumis sativus L. HOM05D003867 ORTHO05D004593 2.5e-27 124.8 65 92.3
HanXRQChr09g0255191 Helianthus annuus HOM05D003867 ORTHO05D004593 2.5e-27 124.8 65 92.3
Lsat_1_v5_gn_4_184020 Lactuca sativa HOM05D003867 ORTHO05D004593 2.5e-27 124.8 65 92.3
Lalb_Chr01g0021001 Lupinus albus HOM05D003867 ORTHO05D004593 2.5e-27 124.8 65 92.3
Lalb_Chr03g0037281 Lupinus albus HOM05D003867 ORTHO05D004593 2.5e-27 124.8 65 92.3
MD13G1115400 Malus domestica HOM05D003867 ORTHO05D004593 2.5e-27 124.8 65 92.3
MD16G1115300 Malus domestica HOM05D003867 ORTHO05D004593 2.5e-27 124.8 65 92.3
Nitab4.5_0000271g0190 Nicotiana tabacum HOM05D003867 ORTHO05D004593 2.5e-27 124.8 65 92.3
Peaxi162Scf00128g01017 Petunia axillaris HOM05D003867 ORTHO05D004593 2.5e-27 124.8 65 92.3
Peaxi162Scf00449g00825 Petunia axillaris HOM05D003867 ORTHO05D004593 2.5e-27 124.8 65 92.3
Prupe.1G231900 Prunus persica HOM05D003867 ORTHO05D004593 2.5e-27 124.8 65 92.3
RcHm_v2.0_Chr4g0430891 Rosa chinensis HOM05D003867 ORTHO05D004593 2.5e-27 124.8 65 92.3
Thecc.02G275800 Theobroma cacao HOM05D003867 ORTHO05D004593 2.5e-27 124.8 65 90.8
unitig_744.g24298 Utricularia gibba HOM05D003867 ORTHO05D004593 2.5e-27 124.8 65 92.3
Aa31LG3G18010 Aethionema arabicum HOM05D003867 ORTHO05D004593 3.2e-27 124.4 65 90.8
AL6G19230 Arabidopsis lyrata HOM05D003867 ORTHO05D004593 3.2e-27 124.4 65 90.8
AT5G08530 Arabidopsis thaliana HOM05D003867 ORTHO05D004593 3.2e-27 124.4 65 90.8
arahy.Tifrunner.gnm1.ann1.IM3BGM Arachis hypogaea HOM05D003867 ORTHO05D004593 3.2e-27 124.4 65 90.8
arahy.Tifrunner.gnm1.ann1.VZW0IR Arachis hypogaea HOM05D003867 ORTHO05D004593 3.2e-27 124.4 65 90.8
C03p04400 Brassica napus HOM05D003867 ORTHO05D004593 3.2e-27 124.4 65 90.8
BolC3t12971H Brassica oleracea HOM05D003867 ORTHO05D004593 3.2e-27 124.4 65 90.8
Carub.0006s0748 Capsella rubella HOM05D003867 ORTHO05D004593 3.2e-27 124.4 65 90.8
CARHR204460 Cardamine hirsuta HOM05D003867 ORTHO05D004593 3.2e-27 124.4 65 90.8
DCAR_007011 Daucus carota HOM05D003867 ORTHO05D004593 3.2e-27 124.4 65 90.8
DCAR_031187 Daucus carota HOM05D003867 ORTHO05D004593 3.2e-27 124.4 65 90.8
ECA232G3717 Erigeron canadensis HOM05D003867 ORTHO05D004593 3.2e-27 124.4 65 90.8
Migut.E00031 Erythranthe guttata HOM05D003867 ORTHO05D004593 3.2e-27 124.4 65 90.8
Thhalv10013394m.g Eutrema salsugineum HOM05D003867 ORTHO05D004593 3.2e-27 124.4 65 90.8
Medtr1g042300 Medicago truncatula HOM05D003867 ORTHO05D004593 3.2e-27 124.4 65 90.8
Psat6g040120 Pisum sativum HOM05D003867 ORTHO05D004593 3.2e-27 124.4 65 90.8
Sc04g0010000 Simmondsia chinensis HOM05D003867 ORTHO05D004593 3.2e-27 124.4 65 92.3
Solyc02g087240.4 Solanum lycopersicum HOM05D003867 ORTHO05D004593 3.2e-27 124.4 65 90.8
Sopen02g031980 Solanum pennellii HOM05D003867 ORTHO05D004593 3.2e-27 124.4 65 90.8
PGSC0003DMG400001292 Solanum tuberosum HOM05D003867 ORTHO05D004593 3.2e-27 124.4 65 90.8
TPR.G25178 Trifolium pratense HOM05D003867 ORTHO05D004593 3.2e-27 124.4 65 90.8
Ah.03g133960 Amaranthus hybridus HOM05D003867 ORTHO05D004593 4.2e-27 124.0 65 90.8
AUR62005586 Chenopodium quinoa HOM05D003867 ORTHO05D004593 4.2e-27 124.0 65 90.8
AUR62024144 Chenopodium quinoa HOM05D003867 ORTHO05D004593 4.2e-27 124.0 65 90.8
HanXRQChr15g0475281 Helianthus annuus HOM05D003867 ORTHO05D004593 4.2e-27 124.0 65 89.2
Rhsim12G0153900 Rhododendron simsii HOM05D003867 ORTHO05D004593 4.2e-27 124.0 65 90.8
Sed0026140 Sechium edule HOM05D003867 ORTHO05D004593 4.2e-27 124.0 65 89.2
Hund25446 Selenicereus undatus HOM05D003867 ORTHO05D004593 4.2e-27 124.0 65 90.8
vmacro15114 Vaccinium macrocarpon HOM05D003867 ORTHO05D004593 4.2e-27 124.0 65 90.8
ATR0564G372 Amborella trichopoda HOM05D003867 ORTHO05D004593 5.5e-27 123.6 65 89.2
Oeu019042.1 Olea europaea HOM05D003867 ORTHO05D004593 5.5e-27 123.6 65 92.3
unitig_21.g20878 Utricularia gibba HOM05D003867 ORTHO05D004593 5.5e-27 123.6 65 90.8
AagrBONN_evm.TU.Sc2ySwM_117.2067 Anthoceros agrestis HOM05D003867 ORTHO05D004593 7.2e-27 123.2 65 89.2
EL10Ac6g13463 Beta vulgaris HOM05D003867 ORTHO05D004593 7.2e-27 123.2 65 89.2
CSS0023173 Camellia sinensis var. sinensis HOM05D003867 ORTHO05D004593 7.2e-27 123.2 65 90.8
CANSAT64G1093 Cannabis sativa HOM05D003867 ORTHO05D004593 7.2e-27 123.2 65 89.2
CDE09G0709 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 7.2e-27 123.2 65 87.7
Ca_12000_v3 Cicer arietinum L. HOM05D003867 ORTHO05D004593 7.2e-27 123.2 65 89.2
FvH4_4g24110 Fragaria vesca HOM05D003867 ORTHO05D004593 7.2e-27 123.2 65 90.8
Glyma.02G003300 Glycine max HOM05D003867 ORTHO05D004593 7.2e-27 123.2 65 89.2
Glyma.10G005500 Glycine max HOM05D003867 ORTHO05D004593 7.2e-27 123.2 65 89.2
Oeu020305.1 Olea europaea HOM05D003867 ORTHO05D004593 7.2e-27 123.2 65 90.8
Phvul.007G274700 Phaseolus vulgaris HOM05D003867 ORTHO05D004593 7.2e-27 123.2 65 89.2
VMungo0720G1468 Vigna mungo HOM05D003867 ORTHO05D004593 7.2e-27 123.2 65 89.2
Zm00001eb110430 Zea mays HOM05D003867 ORTHO05D004593 7.2e-27 123.2 65 90.8
CDE02G4050 Ceratophyllum demersum HOM05D003867 ORTHO05D004593 9.4e-27 122.9 65 87.7
HanXRQChr15g0486841 Helianthus annuus HOM05D003867 ORTHO05D004593 9.4e-27 122.9 65 89.2
Nn4g22382 Nelumbo nucifera HOM05D003867 ORTHO05D004593 9.4e-27 122.9 65 89.2
THA.LOC104818400 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 9.4e-27 122.9 65 90.8
BcaB01g05588 Brassica carinata HOM05D003867 ORTHO05D004593 1.2e-26 122.5 65 89.2
BcaB08g37249 Brassica carinata HOM05D003867 ORTHO05D004593 1.2e-26 122.5 65 89.2
A10p28200 Brassica napus HOM05D003867 ORTHO05D004593 1.2e-26 122.5 65 89.2
C09p68410 Brassica napus HOM05D003867 ORTHO05D004593 1.2e-26 122.5 65 89.2
BolC9t59588H Brassica oleracea HOM05D003867 ORTHO05D004593 1.2e-26 122.5 65 89.2
BraA03t09737Z Brassica rapa HOM05D003867 ORTHO05D004593 1.2e-26 122.5 65 89.2
BraA10t44869Z Brassica rapa HOM05D003867 ORTHO05D004593 1.2e-26 122.5 65 89.2
PSO063G4816 Papaver somniferum HOM05D003867 ORTHO05D004593 1.2e-26 122.5 65 87.7
PSO782G1516 Papaver somniferum HOM05D003867 ORTHO05D004593 1.2e-26 122.5 65 87.7
Pp3c12_4050 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.2e-26 122.5 65 89.2
Pp3c4_17990 Physcomitrium patens HOM05D003867 ORTHO05D004593 1.2e-26 122.5 65 89.2
Sp6g34370 Schrenkiella parvula HOM05D003867 ORTHO05D004593 1.2e-26 122.5 65 89.2
SGA_v2.0_scaffold347G49568 Striga asiatica HOM05D003867 ORTHO05D004593 1.2e-26 122.5 65 89.2
SGA_v2.0_scaffold63G21760 Striga asiatica HOM05D003867 ORTHO05D004593 1.2e-26 122.5 65 89.2
THA.LOC104819362 Tarenaya hassleriana HOM05D003867 ORTHO05D004593 1.2e-26 122.5 65 89.2
Hund06074 Selenicereus undatus HOM05D003867 ORTHO05D004593 1.6e-26 122.1 65 89.2
MBI11_g06772_MAGBIO Magnolia biondii HOM05D003867 ORTHO05D004593 2.1e-26 121.7 65 89.2
HPP92_000985 Vanilla planifolia HOM05D003867 ORTHO05D004593 2.1e-26 121.7 65 89.2
A03p03890 Brassica napus HOM05D003867 ORTHO05D004593 2.7e-26 121.3 65 87.7
CAN.G206.61 Capsicum annuum HOM05D003867 ORTHO05D004593 2.7e-26 121.3 65 87.7
Rhsim12G0103900 Rhododendron simsii HOM05D003867 ORTHO05D004593 2.7e-26 121.3 65 89.2
SEGI_02035 Sequoiadendron giganteum HOM05D003867 ORTHO05D004593 2.7e-26 121.3 65 87.7
Zm00001eb329270 Zea mays HOM05D003867 ORTHO05D004593 2.7e-26 121.3 65 89.2
SMO141G0212 Selaginella moellendorffii HOM05D003867 ORTHO05D004593 3.6e-26 120.9 65 87.7
Mapoly0052s0094 Marchantia polymorpha HOM05D003867 ORTHO05D004593 8.0e-26 119.8 65 86.2
CBR_g4558 Chara braunii HOM05D003867 ORTHO05D004593 1.4e-25 119.0 65 86.2
Lsat_1_v5_gn_0_47760 Lactuca sativa HOM05D003867 ORTHO05D004593 2.3e-25 118.2 65 83.1
PRCOL_00003927 Prasinoderma coloniale HOM05D003867 ORTHO05D004593 4.0e-25 117.5 65 83.1
MCO16G634 Micromonas commoda HOM05D003867 ORTHO05D004593 3.4e-24 114.4 65 83.1
Cre10.g422600 Chlamydomonas reinhardtii HOM05D003867 ORTHO05D004593 1.1e-22 109.4 65 78.5
Haze_26928 Corylus avellana HOM05D003867 ORTHO05D004593 2.4e-22 108.2 65 76.9
CBR_g30767 Chara braunii HOM05D003867 ORTHO05D004593 1.0e-20 102.8 65 70.8
BcaC03g13233 Brassica carinata HOM05D003155 ORTHO05D012487 2.1e-18 95.1 65 72.3
Sed0024813 Sechium edule HOM05D003867 ORTHO05D004593 1.5e-16 89.0 48 81.2
Haze_26697 Corylus avellana HOM05D003867 ORTHO05D004593 3.4e-16 87.8 65 64.6
Actinidia09668 Actinidia chinensis HOM05D003867 ORTHO05D004593 1.1e-11 72.8 35 94.3
Actinidia20690 Actinidia chinensis HOM05D003867 ORTHO05D004593 1.1e-11 72.8 35 94.3
Nitab4.5_0000581g0020 Nicotiana tabacum HOM05D003867 ORTHO05D004593 7.5e-08 60.1 32 87.5
FAN17G1814 Fragaria x ananassa HOM05D003867 ORTHO05D004593 2.2e-07 58.5 32 84.4
C02p03650 Brassica napus HOM05D003867 ORTHO05D004593 2.9e-07 58.2 31 87.1
BolC2t06324H Brassica oleracea HOM05D003867 ORTHO05D004593 2.9e-07 58.2 31 87.1
Dinv39063 Davidia involucrata HOM05D003867 ORTHO05D004593 3.7e-07 57.8 27 96.3
Nn3g20865 Nelumbo nucifera HOM05D003867 ORTHO05D004593 1.4e-06 55.8 27 96.3


User provided reference genes

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