Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g01037 Nelumbo nucifera HOM05D007090 ORTHO05D008993 1.3e-139 500.0 305 100.0
TAR375G0613 Trochodendron aralioides HOM05D007090 ORTHO05D008993 3.7e-65 252.7 300 54.3
GSVIVG01027682001 Vitis vinifera HOM05D007090 ORTHO05D008993 2.5e-45 186.8 308 49.7
Thecc.01G382600 Theobroma cacao HOM05D007090 ORTHO05D008993 1.6e-44 184.1 270 48.9
vmacro13441 Vaccinium macrocarpon HOM05D007090 ORTHO05D008993 1.6e-44 184.1 332 40.4
Duzib138G0673 Durio zibethinus HOM05D007090 ORTHO05D008993 4.6e-44 182.6 271 51.7
Sabra14G0044500 Salix brachista HOM05D007090 ORTHO05D008993 7.9e-44 181.8 296 50.7
Potri.014G060700 Populus trichocarpa HOM05D007090 ORTHO05D008993 2.5e-42 176.8 297 44.4
Gorai.007G089100 Gossypium raimondii HOM05D007090 ORTHO05D008993 2.2e-41 173.7 271 51.7
Gohir.D11G083500 Gossypium hirsutum HOM05D007090 ORTHO05D008993 3.7e-41 172.9 271 46.1
Cc02_g24410 Coffea canephora HOM05D007090 ORTHO05D008993 5.0e-38 162.5 261 46.0
Manes.05G048800 Manihot esculenta HOM05D007090 ORTHO05D008993 8.5e-38 161.8 272 45.6
Actinidia22817 Actinidia chinensis HOM05D007090 ORTHO05D008993 5.5e-37 159.1 267 44.9
vmacro22435 Vaccinium macrocarpon HOM05D007090 ORTHO05D008993 9.4e-37 158.3 289 40.1
CiPaw.13G032600 Carya illinoinensis HOM05D007090 ORTHO05D008993 1.2e-36 157.9 297 37.4
Sc26g0001310 Simmondsia chinensis HOM05D007090 ORTHO05D008993 2.1e-36 157.1 306 41.2
COL.COLO4_12490 Corchorus olitorius HOM05D007090 ORTHO05D008993 4.6e-36 156.0 276 45.3
PGR042G2604 Punica granatum HOM05D007090 ORTHO05D008993 6.1e-36 155.6 279 41.9
Hma1.2p1_0005F.1_g004490 Hydrangea macrophylla HOM05D007090 ORTHO05D008993 1.4e-35 154.5 303 44.9
TPR.G4946 Trifolium pratense HOM05D007090 ORTHO05D008993 1.4e-35 154.5 270 44.1
Lj3g0011300 Lotus japonicus HOM05D007090 ORTHO05D008993 2.3e-35 153.7 301 44.9
PSO782G4184 Papaver somniferum HOM05D007090 ORTHO05D008993 3.0e-35 153.3 318 37.7
Lsat_1_v5_gn_4_45521 Lactuca sativa HOM05D007090 ORTHO05D008993 3.9e-35 152.9 306 39.5
Rhsim07G0031100 Rhododendron simsii HOM05D007090 ORTHO05D008993 5.1e-35 152.5 299 46.2
Actinidia22762 Actinidia chinensis HOM05D007090 ORTHO05D008993 8.8e-35 151.8 234 47.0
Lalb_Chr12g0207911 Lupinus albus HOM05D007090 ORTHO05D008993 8.8e-35 151.8 295 41.7
Prupe.2G138200 Prunus persica HOM05D007090 ORTHO05D008993 8.8e-35 151.8 298 43.0
Ca_19835_v3 Cicer arietinum L. HOM05D007090 ORTHO05D008993 1.1e-34 151.4 295 42.7
PSO063G1752 Papaver somniferum HOM05D007090 ORTHO05D008993 1.1e-34 151.4 320 38.1
TWI23G0238 Tripterygium wilfordii HOM05D007090 ORTHO05D008993 1.5e-34 151.0 319 40.8
Aqoxy5G03901 Aquilegia oxysepala HOM05D007090 ORTHO05D008993 2.0e-34 150.6 291 44.3
Eucgr.E01513 Eucalyptus grandis HOM05D007090 ORTHO05D008993 2.0e-34 150.6 280 46.8
Glyma.03G032000 Glycine max HOM05D007090 ORTHO05D008993 7.4e-34 148.7 301 42.2
Medtr4g026500 Medicago truncatula HOM05D007090 ORTHO05D008993 6.3e-33 145.6 295 41.0
QL04p038719 Quercus lobata HOM05D007090 ORTHO05D008993 8.2e-33 145.2 296 40.2
Haze_02682 Corylus avellana HOM05D007090 ORTHO05D008993 3.1e-32 143.3 281 41.3
DCAR_015886 Daucus carota HOM05D007090 ORTHO05D008993 5.3e-32 142.5 256 41.8
VMungo0331G0297 Vigna mungo HOM05D007090 ORTHO05D008993 6.9e-32 142.1 302 42.4
Ciclev10021511m.g Citrus clementina HOM05D007090 ORTHO05D008993 9.1e-32 141.7 295 41.7
CANSAT56G4322 Cannabis sativa HOM05D007090 ORTHO05D008993 2.6e-31 140.2 295 42.4
MSTRG.4910 Avicennia marina HOM05D007090 ORTHO05D008993 3.4e-31 139.8 320 35.9
HanXRQChr03g0088131 Helianthus annuus HOM05D007090 ORTHO05D008993 4.5e-31 139.4 303 37.6
Hund17045 Selenicereus undatus HOM05D007090 ORTHO05D008993 5.9e-31 139.0 269 38.7
Migut.N01613 Erythranthe guttata HOM05D007090 ORTHO05D008993 1.0e-30 138.3 272 38.2
Nitab4.5_0000859g0240 Nicotiana tabacum HOM05D007090 ORTHO05D008993 3.8e-30 136.3 330 35.5
Dinv44119 Davidia involucrata HOM05D007090 ORTHO05D008993 6.5e-30 135.6 273 42.1
CANSAT56G0199 Cannabis sativa HOM05D007090 ORTHO05D008993 8.5e-30 135.2 289 41.2
Os04g0534300 Oryza sativa ssp. japonica HOM05D007090 ORTHO05D008993 1.4e-29 134.4 274 42.3
Psat7g236160 Pisum sativum HOM05D007090 ORTHO05D008993 1.9e-29 134.0 298 39.6
RcHm_v2.0_Chr1g0349121 Rosa chinensis HOM05D007090 ORTHO05D008993 3.2e-29 133.3 294 41.8
Phvul.010G072500 Phaseolus vulgaris HOM05D007090 ORTHO05D008993 1.2e-28 131.3 291 40.2
CDE04G3442 Ceratophyllum demersum HOM05D007090 ORTHO05D008993 1.6e-28 131.0 296 40.5
arahy.Tifrunner.gnm1.ann1.UP4D5N Arachis hypogaea HOM05D007090 ORTHO05D008993 6.1e-28 129.0 266 39.5
MD02G1210400 Malus domestica HOM05D007090 ORTHO05D008993 6.1e-28 129.0 297 39.1
Sopen01g036660 Solanum pennellii HOM05D007090 ORTHO05D008993 6.1e-28 129.0 321 37.4
Solyc01g090920.3 Solanum lycopersicum HOM05D007090 ORTHO05D008993 8.0e-28 128.6 330 37.3
CSS0004451 Camellia sinensis var. sinensis HOM05D007090 ORTHO05D008993 1.8e-27 127.5 170 52.9
Atru.chr5.252 Acer truncatum HOM05D007090 ORTHO05D008993 2.3e-27 127.1 296 39.5
CSS0011917 Camellia sinensis var. sinensis HOM05D007090 ORTHO05D008993 3.0e-27 126.7 197 40.1
Nitab4.5_0008963g0010 Nicotiana tabacum HOM05D007090 ORTHO05D008993 6.7e-27 125.6 301 37.9
SalBow5G5305 Salvia bowleyana HOM05D007090 ORTHO05D008993 8.8e-27 125.2 289 40.1
FAN10G1641 Fragaria x ananassa HOM05D007090 ORTHO05D008993 7.4e-26 122.1 308 38.3
CsaV3_6G008990 Cucumis sativus L. HOM05D007090 ORTHO05D008993 1.3e-25 121.3 299 35.8
CAN.G1469.17 Capsicum annuum HOM05D007090 ORTHO05D008993 2.2e-25 120.6 314 38.9
ECA234G0545 Erigeron canadensis HOM05D007090 ORTHO05D008993 2.8e-25 120.2 265 39.6
Oeu051923.2 Olea europaea HOM05D007090 ORTHO05D008993 6.3e-25 119.0 295 37.6
THA.LOC104803743 Tarenaya hassleriana HOM05D007090 ORTHO05D008993 8.2e-25 118.6 298 38.6
arahy.Tifrunner.gnm1.ann1.KQM8V4 Arachis hypogaea HOM05D007090 ORTHO05D008993 1.1e-24 118.2 261 37.9
FvH4_7g11100 Fragaria vesca HOM05D007090 ORTHO05D008993 1.1e-24 118.2 294 37.4
Sed0010456 Sechium edule HOM05D007090 ORTHO05D008993 1.1e-24 118.2 269 46.1
Gohir.A11G078900 Gossypium hirsutum HOM05D007090 ORTHO05D008993 4.1e-24 116.3 209 45.9
Aa31LG5G170 Aethionema arabicum HOM05D007090 ORTHO05D008993 9.1e-24 115.2 300 32.7
PGSC0003DMG400025974 Solanum tuberosum HOM05D007090 ORTHO05D008993 1.6e-23 114.4 315 37.1
Thhalv10028898m.g Eutrema salsugineum HOM05D007090 ORTHO05D008993 2.6e-23 113.6 263 36.5
MELO3C022245.2 Cucumis melo HOM05D007090 ORTHO05D008993 5.9e-23 112.5 300 41.0
SGA_v2.0_scaffold11G05536 Striga asiatica HOM05D007090 ORTHO05D008993 5.9e-23 112.5 282 32.3
Ah.08g212650 Amaranthus hybridus HOM05D007090 ORTHO05D008993 1.7e-22 110.9 317 38.5
FAN06G0781 Fragaria x ananassa HOM05D007090 ORTHO05D008993 1.7e-22 110.9 302 36.4
Sp6g00210 Schrenkiella parvula HOM05D007090 ORTHO05D008993 2.9e-22 110.2 292 32.5
AT1G73440 Arabidopsis thaliana HOM05D007090 ORTHO05D008993 5.0e-22 109.4 290 35.9
FAN10G4025 Fragaria x ananassa HOM05D007090 ORTHO05D008993 5.0e-22 109.4 163 41.1
unitig_748.g7116 Utricularia gibba HOM05D007090 ORTHO05D008993 5.0e-22 109.4 269 31.6
FAN03G3027 Fragaria x ananassa HOM05D007090 ORTHO05D008993 2.5e-21 107.1 392 31.4
Peaxi162Scf00803g00118 Petunia axillaris HOM05D007090 ORTHO05D008993 4.2e-21 106.3 163 38.0
CARHR248180 Cardamine hirsuta HOM05D007090 ORTHO05D008993 1.6e-20 104.4 270 37.8
EL10Ac1g00840 Beta vulgaris HOM05D007090 ORTHO05D008993 6.1e-20 102.4 160 37.5
ClCG06G002820 Citrullus lanatus HOM05D007090 ORTHO05D008993 8.0e-20 102.1 302 32.5
AL6G53360 Arabidopsis lyrata HOM05D007090 ORTHO05D008993 1.4e-19 101.3 282 35.8
FAN01G0616 Fragaria x ananassa HOM05D007090 ORTHO05D008993 3.0e-19 100.1 363 32.2
ATR0317G013 Amborella trichopoda HOM05D007090 ORTHO05D008993 6.7e-19 99.0 134 41.8
FAN06G2008 Fragaria x ananassa HOM05D007090 ORTHO05D008993 4.4e-18 96.3 302 34.8
Eucgr.E01517 Eucalyptus grandis HOM05D007090 ORTHO05D008993 5.7e-18 95.9 78 56.4
Carub.0006s3709 Capsella rubella HOM05D007090 ORTHO05D008993 2.8e-17 93.6 287 35.2
BcaB01g02215 Brassica carinata HOM05D007090 ORTHO05D008993 2.2e-14 84.0 290 33.8
A09p00730 Brassica napus HOM05D007090 ORTHO05D008993 3.2e-13 80.1 289 34.3
C09p00130 Brassica napus HOM05D007090 ORTHO05D008993 7.2e-13 79.0 297 33.7
BraA09t35687Z Brassica rapa HOM05D007090 ORTHO05D008993 7.2e-13 79.0 297 33.7
BcaC04g24200 Brassica carinata HOM05D007090 ORTHO05D008993 3.6e-12 76.6 102 38.2
Cpa.g.sc49.155 Carica papaya HOM05D007090 ORTHO05D008993 6.1e-12 75.9 46 63.0
Pp3c13_5390 Physcomitrium patens HOM05D007090 ORTHO05D008993 5.7e-10 69.3 293 25.9
BolC9t52948H Brassica oleracea HOM05D007090 ORTHO05D008993 6.3e-09 65.9 296 33.8
Zm00001eb427420 Zea mays HOM05D007090 ORTHO05D008993 1.8e-08 64.3 186 40.9
ECA234G4391 Erigeron canadensis HOM05D007090 ORTHO05D008993 2.4e-08 63.9 166 33.1
Actinidia12185 Actinidia chinensis HOM05D007090 ORTHO05D008993 1.2e-07 61.6 103 39.8
CBR_g23736 Chara braunii HOM05D007090 ORTHO05D008993 5.0e-06 56.2 45 51.1


User provided reference genes

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