Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g01036 Nelumbo nucifera HOM05D006466 ORTHO05D008084 1.5e-100 369.8 222 100.0
TAR375G0032 Trochodendron aralioides HOM05D006466 ORTHO05D008084 4.2e-63 245.4 216 66.2
Nn6g33981 Nelumbo nucifera HOM05D006466 ORTHO05D008084 1.7e-59 233.4 153 88.9
CiPaw.11G153200 Carya illinoinensis HOM05D006466 ORTHO05D008084 7.7e-57 224.6 216 66.7
Potri.001G123200 Populus trichocarpa HOM05D006466 ORTHO05D008084 5.6e-55 218.4 224 55.4
Dinv39131 Davidia involucrata HOM05D006466 ORTHO05D008084 1.2e-54 217.2 227 59.0
Eucgr.D02068 Eucalyptus grandis HOM05D006466 ORTHO05D008084 1.2e-54 217.2 224 56.2
GSVIVG01001313001 Vitis vinifera HOM05D006466 ORTHO05D008084 8.0e-54 214.5 219 58.4
Ciclev10005762m.g Citrus clementina HOM05D006466 ORTHO05D008084 1.4e-53 213.8 236 53.0
Sabra01G0094900 Salix brachista HOM05D006466 ORTHO05D008084 2.3e-53 213.0 224 54.5
Actinidia27463 Actinidia chinensis HOM05D006466 ORTHO05D008084 5.2e-53 211.8 218 56.9
QL12p012545 Quercus lobata HOM05D006466 ORTHO05D008084 1.5e-52 210.3 232 53.4
PSO170G1975 Papaver somniferum HOM05D006466 ORTHO05D008084 3.4e-52 209.1 221 58.4
Haze_07889 Corylus avellana HOM05D006466 ORTHO05D008084 4.4e-52 208.8 228 59.2
Gohir.A12G217700 Gossypium hirsutum HOM05D006466 ORTHO05D008084 4.4e-52 208.8 226 56.6
PSO528G0015 Papaver somniferum HOM05D006466 ORTHO05D008084 5.7e-52 208.4 222 58.1
Thecc.03G253200 Theobroma cacao HOM05D006466 ORTHO05D008084 5.7e-52 208.4 224 58.9
Cfa012739 Carpinus fangiana HOM05D006466 ORTHO05D008084 1.7e-51 206.8 223 58.3
MELO3C005537.2 Cucumis melo HOM05D006466 ORTHO05D008084 3.7e-51 205.7 218 56.4
TWI81G0148 Tripterygium wilfordii HOM05D006466 ORTHO05D008084 4.9e-51 205.3 240 51.2
Gohir.D12G220200 Gossypium hirsutum HOM05D006466 ORTHO05D008084 6.4e-51 204.9 226 55.8
Hma1.2p1_2380F.1_g320960 Hydrangea macrophylla HOM05D006466 ORTHO05D008084 8.3e-51 204.5 230 53.0
Gorai.008G235900 Gossypium raimondii HOM05D006466 ORTHO05D008084 1.1e-50 204.1 226 56.2
Atru.chr2.1841 Acer truncatum HOM05D006466 ORTHO05D008084 3.2e-50 202.6 224 55.8
Lj1A353T9 Lonicera japonica HOM05D006466 ORTHO05D008084 4.1e-50 202.2 222 51.8
CDE02G4728 Ceratophyllum demersum HOM05D006466 ORTHO05D008084 7.0e-50 201.4 203 57.1
CsaV3_5G004180 Cucumis sativus L. HOM05D006466 ORTHO05D008084 7.0e-50 201.4 217 54.8
ClCG01G004000 Citrullus lanatus HOM05D006466 ORTHO05D008084 9.2e-50 201.1 217 56.7
Manes.01G079600 Manihot esculenta HOM05D006466 ORTHO05D008084 2.7e-49 199.5 229 54.1
PGR031G1557 Punica granatum HOM05D006466 ORTHO05D008084 7.8e-49 198.0 217 56.7
RcHm_v2.0_Chr7g0203001 Rosa chinensis HOM05D006466 ORTHO05D008084 1.3e-48 197.2 231 52.8
FvH4_5g18710 Fragaria vesca HOM05D006466 ORTHO05D008084 3.9e-48 195.7 227 55.5
FAN18G0606 Fragaria x ananassa HOM05D006466 ORTHO05D008084 1.9e-47 193.4 227 54.6
Sopen08g027210 Solanum pennellii HOM05D006466 ORTHO05D008084 1.9e-47 193.4 240 47.5
FAN04G2180 Fragaria x ananassa HOM05D006466 ORTHO05D008084 5.6e-47 191.8 227 52.0
Sed0026776 Sechium edule HOM05D006466 ORTHO05D008084 5.6e-47 191.8 220 55.0
Solyc08g078740.1 Solanum lycopersicum HOM05D006466 ORTHO05D008084 7.3e-47 191.4 240 47.1
Lsat_1_v5_gn_3_521 Lactuca sativa HOM05D006466 ORTHO05D008084 9.5e-47 191.0 225 50.7
Sed0012351 Sechium edule HOM05D006466 ORTHO05D008084 9.5e-47 191.0 211 56.9
PGSC0003DMG401004755 Solanum tuberosum HOM05D006466 ORTHO05D008084 9.5e-47 191.0 233 48.1
Cpa.g.sc29.144 Carica papaya HOM05D006466 ORTHO05D008084 1.2e-46 190.7 228 55.7
DCAR_008489 Daucus carota HOM05D005079 ORTHO05D006362 8.0e-46 188.0 226 50.0
Nitab4.5_0000312g0170 Nicotiana tabacum HOM05D006466 ORTHO05D008084 1.4e-45 187.2 238 49.6
FAN13G1623 Fragaria x ananassa HOM05D006466 ORTHO05D008084 3.1e-45 186.0 227 52.0
MSTRG.12091 Avicennia marina HOM05D006466 ORTHO05D008084 6.8e-45 184.9 233 51.5
Prupe.5G071300 Prunus persica HOM05D006466 ORTHO05D008084 6.8e-45 184.9 216 58.8
Nitab4.5_0008481g0010 Nicotiana tabacum HOM05D006466 ORTHO05D008084 1.5e-44 183.7 239 49.4
ATR0193G040 Amborella trichopoda HOM05D006466 ORTHO05D008084 5.8e-44 181.8 159 64.2
Ah.12g056750 Amaranthus hybridus HOM05D006466 ORTHO05D008084 9.8e-44 181.0 229 49.3
Manes.15G178500 Manihot esculenta HOM05D006466 ORTHO05D008084 9.8e-44 181.0 233 49.4
Eucgr.D02058 Eucalyptus grandis HOM05D006466 ORTHO05D008084 2.2e-43 179.9 223 51.6
GSVIVG01030884001 Vitis vinifera HOM05D006466 ORTHO05D008084 2.9e-43 179.5 216 51.9
Manes.15G178400 Manihot esculenta HOM05D006466 ORTHO05D008084 6.4e-43 178.3 225 50.2
Sp7g15110 Schrenkiella parvula HOM05D006466 ORTHO05D008084 1.1e-42 177.6 253 50.2
Carub.0007s2494 Capsella rubella HOM05D006466 ORTHO05D008084 1.4e-42 177.2 252 49.2
CARHR222950 Cardamine hirsuta HOM05D006466 ORTHO05D008084 4.1e-42 175.6 253 53.4
MD04G1088600 Malus domestica HOM05D006466 ORTHO05D008084 4.1e-42 175.6 237 48.9
CANSAT21G1921 Cannabis sativa HOM05D006466 ORTHO05D008084 5.4e-42 175.3 232 50.9
Medtr4g101030 Medicago truncatula HOM05D006466 ORTHO05D008084 5.4e-42 175.3 231 49.4
Aa31LG2G12660 Aethionema arabicum HOM05D006466 ORTHO05D008084 7.0e-42 174.9 240 49.2
BcaNung02868 Brassica carinata HOM05D006466 ORTHO05D008084 7.0e-42 174.9 248 47.6
Peaxi162Scf00002g00172 Petunia axillaris HOM05D006466 ORTHO05D008084 6.0e-41 171.8 257 46.3
Thhalv10026056m.g Eutrema salsugineum HOM05D006466 ORTHO05D008084 1.0e-40 171.0 254 50.0
SGA_v2.0_scaffold120G32877 Striga asiatica HOM05D006466 ORTHO05D008084 1.0e-40 171.0 238 48.3
FAN08G0853 Fragaria x ananassa HOM05D006466 ORTHO05D008084 1.7e-40 170.2 227 50.7
SHI10480 Sapria himalayana HOM05D006466 ORTHO05D008084 6.6e-40 168.3 221 49.3
AL7G38350 Arabidopsis lyrata HOM05D006466 ORTHO05D008084 8.6e-40 167.9 252 46.8
AL7G38400 Arabidopsis lyrata HOM05D006466 ORTHO05D008084 8.6e-40 167.9 252 46.8
ECA232G3467 Erigeron canadensis HOM05D006466 ORTHO05D008084 1.1e-39 167.5 235 45.1
Aqoxy6G01886 Aquilegia oxysepala HOM05D006466 ORTHO05D008084 2.5e-39 166.4 239 49.0
Rhsim07G0108000 Rhododendron simsii HOM05D006466 ORTHO05D008084 5.6e-39 165.2 160 56.9
HPP92_014482 Vanilla planifolia HOM05D006466 ORTHO05D008084 5.6e-39 165.2 225 48.4
SalBow6G4398 Salvia bowleyana HOM05D006466 ORTHO05D008084 7.3e-39 164.9 172 54.1
Phvul.003G219800 Phaseolus vulgaris HOM05D006466 ORTHO05D008084 9.5e-39 164.5 221 53.8
unitig_61.g26196 Utricularia gibba HOM05D006466 ORTHO05D008084 9.5e-39 164.5 234 44.9
BcaC06g33488 Brassica carinata HOM05D006466 ORTHO05D008084 1.2e-38 164.1 251 45.4
C07p47980 Brassica napus HOM05D006466 ORTHO05D008084 1.2e-38 164.1 251 45.4
BolC7t45321H Brassica oleracea HOM05D006466 ORTHO05D008084 1.2e-38 164.1 251 45.4
TPR.G37616 Trifolium pratense HOM05D006466 ORTHO05D008084 1.6e-38 163.7 228 50.4
A03p49940 Brassica napus HOM05D006466 ORTHO05D008084 2.1e-38 163.3 249 45.8
BraA03t14087Z Brassica rapa HOM05D006466 ORTHO05D008084 2.1e-38 163.3 249 45.8
Lj8A452G56 Lonicera japonica HOM05D006466 ORTHO05D008084 1.2e-36 157.5 225 44.4
Lj4g0024258 Lotus japonicus HOM05D006466 ORTHO05D008084 2.0e-36 156.8 216 48.6
AT4G16535 Arabidopsis thaliana HOM05D006466 ORTHO05D008084 3.4e-36 156.0 254 43.3
SEGI_30297 Sequoiadendron giganteum HOM05D006466 ORTHO05D008084 4.4e-36 155.6 231 48.5
arahy.Tifrunner.gnm1.ann1.VT8LY8 Arachis hypogaea HOM05D006466 ORTHO05D008084 5.8e-36 155.2 227 48.0
Migut.A00968 Erythranthe guttata HOM05D006466 ORTHO05D008084 5.8e-36 155.2 242 46.3
Cc08_g12600 Coffea canephora HOM05D006466 ORTHO05D008084 3.7e-35 152.5 196 48.0
VMungo0251G3296 Vigna mungo HOM05D006466 ORTHO05D008084 6.4e-35 151.8 227 51.5
Os10g0507500 Oryza sativa ssp. japonica HOM05D006466 ORTHO05D008084 8.3e-35 151.4 241 50.6
Psat4g071640 Pisum sativum HOM05D006466 ORTHO05D008084 2.4e-34 149.8 188 47.9
arahy.Tifrunner.gnm1.ann1.HK6I2L Arachis hypogaea HOM05D006466 ORTHO05D008084 4.1e-34 149.1 224 42.4
Oeu019590.1 Olea europaea HOM05D006466 ORTHO05D008084 4.1e-34 149.1 232 47.0
CDE11G0010 Ceratophyllum demersum HOM05D006466 ORTHO05D008084 5.4e-34 148.7 182 51.1
Lalb_Chr16g0389331 Lupinus albus HOM05D006466 ORTHO05D008084 9.2e-34 147.9 168 52.4
arahy.Tifrunner.gnm1.ann1.LISY29 Arachis hypogaea HOM05D006466 ORTHO05D008084 1.6e-33 147.1 230 42.6
arahy.Tifrunner.gnm1.ann1.MY6G43 Arachis hypogaea HOM05D006466 ORTHO05D008084 3.9e-32 142.5 225 46.7
AUR62007505 Chenopodium quinoa HOM05D006466 ORTHO05D008084 1.5e-31 140.6 163 50.9
Ca_21959_v3 Cicer arietinum L. HOM05D006466 ORTHO05D008084 8.1e-30 134.8 156 48.7
AUR62039958 Chenopodium quinoa HOM05D006466 ORTHO05D008084 1.8e-29 133.7 218 45.4
Glyma.17G140900 Glycine max HOM05D006466 ORTHO05D008084 3.5e-25 119.4 225 41.3
AagrBONN_evm.TU.Sc2ySwM_228.639 Anthoceros agrestis HOM05D007188 ORTHO05D009102 4.3e-23 112.5 235 36.2
arahy.Tifrunner.gnm1.ann1.Y2DLV0 Arachis hypogaea HOM05D006466 ORTHO05D008084 2.0e-20 103.6 105 55.2
Mapoly0015s0012 Marchantia polymorpha HOM05D006466 ORTHO05D008084 2.0e-20 103.6 248 33.1
Pp3c3_19850 Physcomitrium patens HOM05D006466 ORTHO05D008084 7.6e-20 101.7 219 35.6
Oeu039628.1 Olea europaea HOM05D006466 ORTHO05D008084 4.6e-17 92.4 55 83.6
Zm00001eb044010 Zea mays HOM05D006466 ORTHO05D008084 4.6e-17 92.4 65 72.3
Eucgr.L01522 Eucalyptus grandis HOM05D006466 ORTHO05D008084 1.1e-15 87.8 51 84.3
HanXRQChr02g0051581 Helianthus annuus HOM05D006466 ORTHO05D008084 1.4e-13 80.9 101 45.5
Sc22g0000810 Simmondsia chinensis HOM05D006466 ORTHO05D008084 5.3e-13 79.0 97 54.6
arahy.Tifrunner.gnm1.ann1.AC5BZW Arachis hypogaea HOM05D006466 ORTHO05D008084 9.0e-13 78.2 173 37.6
BcaC04g19403 Brassica carinata HOM05D006466 ORTHO05D008084 5.4e-10 68.9 92 43.5
BolC9t58475H Brassica oleracea HOM05D006466 ORTHO05D008084 5.4e-10 68.9 92 43.5
Actinidia05202 Actinidia chinensis HOM05D006466 ORTHO05D008084 2.1e-09 67.0 84 45.2
arahy.Tifrunner.gnm1.ann1.W2BU8F Arachis hypogaea HOM05D004339 ORTHO05D002389 6.7e-08 62.0 176 35.8
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 7.4e-07 58.5 47 68.1
CBR_g29445 Chara braunii HOM05D006466 ORTHO05D008084 7.4e-07 58.5 87 43.7


User provided reference genes

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