Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00955 Nelumbo nucifera HOM05D007712 ORTHO05D009755 1.1e-47 193.0 102 100.0
Nn6g33914 Nelumbo nucifera HOM05D007712 ORTHO05D009755 4.5e-20 101.3 55 92.7
Prupe.5G067000 Prunus persica HOM05D007712 ORTHO05D009755 7.8e-20 100.5 54 90.7
MD06G1056600 Malus domestica HOM05D007712 ORTHO05D009755 1.3e-19 99.8 54 90.7
MD04G1062500 Malus domestica HOM05D007712 ORTHO05D009755 1.7e-19 99.4 54 88.9
Thecc.03G249200 Theobroma cacao HOM05D007712 ORTHO05D009755 1.7e-19 99.4 54 88.9
CSS0007152 Camellia sinensis var. sinensis HOM05D007712 ORTHO05D009755 2.9e-19 98.6 58 86.2
PSO063G7306 Papaver somniferum HOM05D007712 ORTHO05D009755 2.9e-19 98.6 55 87.3
Glyma.17G143000 Glycine max HOM05D007712 ORTHO05D009755 5.0e-19 97.8 53 88.7
Duzib068G1393 Durio zibethinus HOM05D007712 ORTHO05D009755 1.1e-18 96.7 52 92.3
TWI60G0592 Tripterygium wilfordii HOM05D007712 ORTHO05D009755 1.1e-18 96.7 54 87.0
Gohir.D12G218700 Gossypium hirsutum HOM05D007712 ORTHO05D009755 1.5e-18 96.3 54 85.2
Gorai.008G234300 Gossypium raimondii HOM05D007712 ORTHO05D009755 1.5e-18 96.3 54 85.2
Manes.01G082000 Manihot esculenta HOM05D007712 ORTHO05D009755 1.5e-18 96.3 56 83.9
Medtr4g100770 Medicago truncatula HOM05D007712 ORTHO05D009755 1.5e-18 96.3 54 85.2
RcHm_v2.0_Chr7g0203631 Rosa chinensis HOM05D007712 ORTHO05D009755 1.5e-18 96.3 54 88.9
CSS0012443 Camellia sinensis var. sinensis HOM05D007712 ORTHO05D009755 1.9e-18 95.9 52 88.5
Glyma.05G061200 Glycine max HOM05D007712 ORTHO05D009755 1.9e-18 95.9 52 88.5
DCAR_006839 Daucus carota HOM05D007712 ORTHO05D009755 2.5e-18 95.5 52 88.5
Manes.02G041000 Manihot esculenta HOM05D007712 ORTHO05D009755 2.5e-18 95.5 54 85.2
Ca_21974_v3 Cicer arietinum L. HOM05D007712 ORTHO05D009755 3.3e-18 95.1 52 86.5
VMungo0251G2826 Vigna mungo HOM05D007712 ORTHO05D009755 3.3e-18 95.1 64 73.4
Cpa.g.sc29.177 Carica papaya HOM05D007712 ORTHO05D009755 4.3e-18 94.7 52 88.5
COL.COLO4_37150 Corchorus olitorius HOM05D007712 ORTHO05D009755 4.3e-18 94.7 52 86.5
PSO782G1928 Papaver somniferum HOM05D007712 ORTHO05D009755 4.3e-18 94.7 52 90.4
Gohir.A12G216100 Gossypium hirsutum HOM05D007712 ORTHO05D009755 5.6e-18 94.4 52 86.5
ATR0317G046 Amborella trichopoda HOM05D007712 ORTHO05D009755 7.3e-18 94.0 52 86.5
Haze_07896 Corylus avellana HOM05D007712 ORTHO05D009755 7.3e-18 94.0 52 88.5
DCAR_008500 Daucus carota HOM05D007712 ORTHO05D009755 9.5e-18 93.6 52 84.6
Duzib205G0100 Durio zibethinus HOM05D007712 ORTHO05D009755 9.5e-18 93.6 52 86.5
Psat4g072600 Pisum sativum HOM05D007712 ORTHO05D009755 9.5e-18 93.6 54 81.5
Lj4g0003995 Lotus japonicus HOM05D007712 ORTHO05D009755 1.6e-17 92.8 55 83.6
TAR629G1768 Trochodendron aralioides HOM05D007712 ORTHO05D009755 1.6e-17 92.8 55 85.5
ClCG01G004140 Citrullus lanatus HOM05D007712 ORTHO05D009755 2.1e-17 92.4 53 83.0
Ciclev10023737m.g Citrus clementina HOM05D007712 ORTHO05D009755 6.1e-17 90.9 49 85.7
EL10Ac5g12378 Beta vulgaris HOM05D007712 ORTHO05D009755 8.0e-17 90.5 52 82.7
Hma1.2p1_0316F.1_g122970 Hydrangea macrophylla HOM05D007712 ORTHO05D009755 8.0e-17 90.5 52 86.5
Potri.001G156500 Populus trichocarpa HOM05D007712 ORTHO05D009755 8.0e-17 90.5 53 88.7
Potri.003G078100 Populus trichocarpa HOM05D007712 ORTHO05D009755 1.0e-16 90.1 52 84.6
Lsat_1_v5_gn_6_18000 Lactuca sativa HOM05D007712 ORTHO05D009755 1.4e-16 89.7 55 80.0
Phvul.003G221800 Phaseolus vulgaris HOM05D007712 ORTHO05D009755 1.4e-16 89.7 52 84.6
Aa31LG2G12880 Aethionema arabicum HOM05D007712 ORTHO05D009755 1.8e-16 89.4 52 82.7
AL7G38040 Arabidopsis lyrata HOM05D007712 ORTHO05D009755 2.3e-16 89.0 54 79.6
CARHR223220 Cardamine hirsuta HOM05D007712 ORTHO05D009755 3.0e-16 88.6 54 79.6
Pp3c5_22940 Physcomitrium patens HOM05D007712 ORTHO05D009755 3.0e-16 88.6 89 53.9
BcaNung00160 Brassica carinata HOM05D007712 ORTHO05D009755 4.0e-16 88.2 52 80.8
AT4G16695 Arabidopsis thaliana HOM05D007712 ORTHO05D009755 5.2e-16 87.8 54 77.8
CiPaw.11G080700 Carya illinoinensis HOM05D007712 ORTHO05D009755 5.2e-16 87.8 54 81.5
C01p25890 Brassica napus HOM05D007712 ORTHO05D009755 6.8e-16 87.4 52 78.8
PGR031G2779 Punica granatum HOM05D007712 ORTHO05D009755 6.8e-16 87.4 52 80.8
CANSAT21G0844 Cannabis sativa HOM05D007712 ORTHO05D009755 1.2e-15 86.7 47 89.4
Carub.0007s2470 Capsella rubella HOM05D007712 ORTHO05D009755 1.2e-15 86.7 52 80.8
HanXRQChr16g0510951 Helianthus annuus HOM05D007712 ORTHO05D009755 1.2e-15 86.7 56 75.0
Mapoly0033s0142 Marchantia polymorpha HOM05D007712 ORTHO05D009755 2.6e-15 85.5 52 78.8
MELO3C005524.2 Cucumis melo HOM05D007712 ORTHO05D009755 4.4e-15 84.7 53 81.1
Sp7g15330 Schrenkiella parvula HOM05D007712 ORTHO05D009755 4.4e-15 84.7 51 80.4
CiPaw.12G051200 Carya illinoinensis HOM05D007712 ORTHO05D009755 5.8e-15 84.3 55 83.6
Eucgr.E00411 Eucalyptus grandis HOM05D007712 ORTHO05D009755 9.8e-15 83.6 81 56.8
Sed0021045 Sechium edule HOM05D007712 ORTHO05D009755 9.8e-15 83.6 53 81.1
A01p20590 Brassica napus HOM05D007712 ORTHO05D009755 1.7e-14 82.8 47 83.0
BolC1t02534H Brassica oleracea HOM05D007712 ORTHO05D009755 1.7e-14 82.8 46 84.8
BraA01t01987Z Brassica rapa HOM05D007712 ORTHO05D009755 1.7e-14 82.8 47 83.0
THA.LOC104815500 Tarenaya hassleriana HOM05D007712 ORTHO05D009755 2.9e-14 82.0 52 78.8
BcaC06g33508 Brassica carinata HOM05D007712 ORTHO05D009755 6.4e-14 80.9 44 88.6
C07p48200 Brassica napus HOM05D007712 ORTHO05D009755 6.4e-14 80.9 44 88.6
BolC7t45343H Brassica oleracea HOM05D007712 ORTHO05D009755 6.4e-14 80.9 44 88.6
HanXRQChr11g0345641 Helianthus annuus HOM05D007712 ORTHO05D009755 6.4e-14 80.9 45 82.2
HanXRQChr13g0400821 Helianthus annuus HOM05D007712 ORTHO05D009755 1.1e-13 80.1 45 82.2
Nitab4.5_0002289g0090 Nicotiana tabacum HOM05D007712 ORTHO05D009755 1.1e-13 80.1 54 72.2
Migut.A01117 Erythranthe guttata HOM05D007712 ORTHO05D009755 1.8e-13 79.3 57 75.4
Solyc08g078480.3 Solanum lycopersicum HOM05D007712 ORTHO05D009755 1.8e-13 79.3 49 75.5
PGSC0003DMG402004821 Solanum tuberosum HOM05D007712 ORTHO05D009755 2.4e-13 79.0 54 72.2
Duzib268G1849 Durio zibethinus HOM05D007712 ORTHO05D009755 3.2e-13 78.6 64 62.5
Nitab4.5_0001381g0130 Nicotiana tabacum HOM05D007712 ORTHO05D009755 3.2e-13 78.6 47 76.6
HPP92_021033 Vanilla planifolia HOM05D007712 ORTHO05D009755 5.4e-13 77.8 51 78.4
HPP92_027434 Vanilla planifolia HOM05D007712 ORTHO05D009755 5.4e-13 77.8 51 78.4
CAN.G1178.28 Capsicum annuum HOM05D007712 ORTHO05D009755 7.0e-13 77.4 48 75.0
SHI02516 Sapria himalayana HOM05D007712 ORTHO05D009755 7.0e-13 77.4 48 81.2
vmacro00192 Vaccinium macrocarpon HOM05D007712 ORTHO05D009755 9.2e-13 77.0 54 74.1
Lalb_Chr16g0386781 Lupinus albus HOM05D007712 ORTHO05D009755 2.7e-12 75.5 54 70.4
BraA08t33255Z Brassica rapa HOM05D007712 ORTHO05D009755 6.0e-12 74.3 45 80.0
Lalb_Chr05g0221211 Lupinus albus HOM05D007712 ORTHO05D009755 7.8e-12 73.9 54 68.5
unitig_744.g24472 Utricularia gibba HOM05D007712 ORTHO05D009755 6.6e-11 70.9 66 56.1
CBR_g755 Chara braunii HOM05D007712 ORTHO05D009755 8.6e-11 70.5 52 65.4
FAN08G0196 Fragaria x ananassa HOM05D007712 ORTHO05D009755 6.2e-09 64.3 31 100.0
A03p50120 Brassica napus HOM05D007712 ORTHO05D009755 1.1e-08 63.5 46 67.4
FAN04G1285 Fragaria x ananassa HOM05D007712 ORTHO05D009755 2.0e-07 59.3 31 93.5
THA.LOC104815513 Tarenaya hassleriana HOM05D007712 ORTHO05D009755 5.8e-07 57.8 34 82.4
Os03g0102000 Oryza sativa ssp. japonica HOM05D007712 ORTHO05D009755 1.3e-06 56.6 57 52.6


User provided reference genes

Program Settings