Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00907 Nelumbo nucifera HOM05D005527 ORTHO05D006480 1.2e-92 343.2 176 100.0
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 6.8e-64 247.7 134 89.6
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 2.6e-63 245.7 134 88.1
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 2.6e-63 245.7 134 88.8
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 1.8e-61 239.6 134 85.1
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 2.4e-61 239.2 134 85.8
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 7.0e-61 237.7 134 84.3
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 7.8e-60 234.2 134 83.6
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 2.3e-59 232.6 134 84.3
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 2.9e-59 232.3 132 84.8
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 2.9e-59 232.3 134 81.3
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 2.9e-59 232.3 134 82.8
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 5.0e-59 231.5 134 82.8
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 6.6e-59 231.1 134 82.8
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 8.6e-59 230.7 136 80.9
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 1.5e-58 229.9 134 81.3
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 1.5e-58 229.9 134 82.1
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 1.9e-58 229.6 134 81.3
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 2.5e-58 229.2 136 79.4
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 2.5e-58 229.2 136 79.4
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 3.3e-58 228.8 134 79.9
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 4.3e-58 228.4 134 82.1
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 5.6e-58 228.0 134 82.1
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 9.5e-58 227.3 134 79.9
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 2.8e-57 225.7 134 79.9
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 6.1e-57 224.6 133 79.7
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 6.1e-57 224.6 133 79.7
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 8.0e-57 224.2 131 81.7
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 8.0e-57 224.2 134 79.1
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 1.0e-56 223.8 133 75.9
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 1.8e-56 223.0 133 76.7
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 1.8e-56 223.0 134 77.6
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 1.8e-56 223.0 134 82.1
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 6.8e-56 221.1 133 74.4
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 8.9e-56 220.7 134 79.1
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 8.9e-56 220.7 136 75.0
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 1.5e-55 219.9 133 78.9
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 1.5e-55 219.9 133 80.5
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 1.5e-55 219.9 138 79.0
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 2.6e-55 219.2 133 75.9
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 3.4e-55 218.8 134 78.4
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 5.7e-55 218.0 133 77.4
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 7.5e-55 217.6 133 77.4
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 7.5e-55 217.6 133 77.4
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 9.8e-55 217.2 134 76.9
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 1.3e-54 216.9 133 75.2
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 1.3e-54 216.9 133 76.7
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 1.7e-54 216.5 133 75.2
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 2.2e-54 216.1 133 74.4
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 2.9e-54 215.7 133 73.7
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 3.7e-54 215.3 132 75.8
Rhsim01G0137400 Rhododendron simsii HOM05D005527 ORTHO05D006480 3.7e-54 215.3 189 60.8
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 6.4e-54 214.5 136 72.8
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 6.4e-54 214.5 136 72.8
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 6.4e-54 214.5 136 72.8
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 6.4e-54 214.5 136 75.0
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 6.4e-54 214.5 136 73.5
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 8.3e-54 214.2 133 75.2
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 8.3e-54 214.2 133 76.7
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 1.1e-53 213.8 133 74.4
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 1.1e-53 213.8 133 74.4
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 1.1e-53 213.8 133 74.4
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 1.1e-53 213.8 134 73.9
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 1.1e-53 213.8 132 75.8
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 1.1e-53 213.8 133 75.9
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 1.1e-53 213.8 134 74.6
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 1.4e-53 213.4 133 73.7
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 1.8e-53 213.0 133 75.2
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 1.8e-53 213.0 134 73.1
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 1.8e-53 213.0 133 73.7
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 2.4e-53 212.6 133 72.2
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 3.2e-53 212.2 134 73.1
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 7.0e-53 211.1 134 73.1
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 1.2e-52 210.3 134 73.1
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 1.2e-52 210.3 132 75.8
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 1.2e-52 210.3 134 74.6
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 1.6e-52 209.9 187 60.4
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 1.6e-52 209.9 133 74.4
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 2.0e-52 209.5 134 72.4
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 2.0e-52 209.5 134 72.4
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 2.0e-52 209.5 136 71.3
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 2.0e-52 209.5 133 73.7
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 2.0e-52 209.5 134 72.4
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 3.5e-52 208.8 140 70.7
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 5.9e-52 208.0 132 72.7
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 7.8e-52 207.6 140 74.3
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 2.3e-51 206.1 136 69.1
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 2.3e-51 206.1 133 72.9
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 3.0e-51 205.7 134 70.9
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 5.0e-51 204.9 133 71.4
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 6.6e-51 204.5 133 70.7
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 8.6e-51 204.1 133 71.4
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 8.6e-51 204.1 136 73.5
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 1.1e-50 203.8 136 69.9
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 1.1e-50 203.8 134 70.9
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 1.1e-50 203.8 134 70.9
SMO201G0136 Selaginella moellendorffii HOM05D005527 ORTHO05D006480 1.9e-50 203.0 133 69.9
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 3.3e-50 202.2 147 67.3
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 3.3e-50 202.2 147 67.3
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 3.3e-50 202.2 147 67.3
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 3.3e-50 202.2 147 67.3
AagrBONN_evm.TU.Sc2ySwM_117.1379 Anthoceros agrestis HOM05D005527 ORTHO05D006480 4.3e-50 201.8 133 71.4
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 5.6e-50 201.4 133 69.9
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 9.5e-50 200.7 137 68.6
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 1.6e-49 199.9 133 72.2
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 2.1e-49 199.5 138 75.4
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 8.0e-49 197.6 137 67.9
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 2.3e-48 196.1 150 65.3
CSS0049638 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 3.1e-48 195.7 109 85.3
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 5.2e-48 194.9 133 71.4
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 4.4e-47 191.8 132 64.4
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 3.7e-46 188.7 171 57.9
SEGI_20492 Sequoiadendron giganteum HOM05D005527 ORTHO05D006480 1.4e-45 186.8 140 66.4
Mapoly0168s0006 Marchantia polymorpha HOM05D005527 ORTHO05D006480 3.2e-45 185.7 132 64.4
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 4.6e-44 181.8 112 72.3
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 2.3e-43 179.5 134 65.7
BcaC07g39791 Brassica carinata HOM05D005527 ORTHO05D006480 1.1e-42 177.2 136 64.0
Oeu018739.1 Olea europaea HOM05D005527 ORTHO05D006480 1.4e-40 170.2 93 87.1
BcaB02g08455 Brassica carinata HOM05D005527 ORTHO05D006480 2.9e-38 162.5 136 60.3
CBR_g6321 Chara braunii HOM05D005527 ORTHO05D000048 2.9e-38 162.5 167 49.1
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 4.6e-36 155.2 98 72.4
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 3.0e-35 152.5 112 66.1
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 2.0e-31 139.8 83 78.3
Haze_19655 Corylus avellana HOM05D002184 ORTHO05D002379 5.8e-31 138.3 92 67.4
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 3.8e-30 135.6 84 75.0
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 1.1e-29 134.0 81 75.3
FAN23G2762 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.4e-24 117.1 99 53.5
Cre09.g405550 Chlamydomonas reinhardtii HOM05D005527 ORTHO05D006480 6.0e-20 101.7 125 40.8
MCO09G641 Micromonas commoda HOM05D005527 ORTHO05D006480 1.0e-19 100.9 116 43.1
PRCOL_00001529 Prasinoderma coloniale HOM05D005527 ORTHO05D006480 2.3e-19 99.8 135 40.7
FAN19G1210 Fragaria x ananassa HOM05D005527 ORTHO05D006480 3.0e-19 99.4 121 46.3
ECA240G0336 Erigeron canadensis HOM05D002424 ORTHO05D002640 8.4e-14 81.3 83 54.2
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 3.3e-10 69.3 43 69.8
Glyma.08G276700 Glycine max HOM05D005527 ORTHO05D006480 4.0e-08 62.4 61 47.5
HanXRQChr11g0351331 Helianthus annuus HOM05D005527 ORTHO05D006480 7.6e-07 58.2 56 53.6
A09p00830 Brassica napus HOM05D005527 ORTHO05D006480 3.8e-06 55.8 48 58.3
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 3.8e-06 55.8 42 66.7


User provided reference genes

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