Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00888 Nelumbo nucifera HOM05D003543 ORTHO05D004112 2.9e-46 188.3 103 100.0
Nn2g11431 Nelumbo nucifera HOM05D001865 ORTHO05D004112 2.8e-33 145.2 112 73.2
AUR62012814 Chenopodium quinoa HOM05D003543 ORTHO05D004112 5.8e-23 110.9 117 56.4
AUR62021839 Chenopodium quinoa HOM05D003543 ORTHO05D004112 5.8e-23 110.9 117 56.4
unitig_32.g11369 Utricularia gibba HOM05D003543 ORTHO05D004112 8.4e-22 107.1 91 67.0
Nn5g30699 Nelumbo nucifera HOM05D003543 ORTHO05D004112 1.9e-21 105.9 112 60.7
BcaC06g33483 Brassica carinata HOM05D003543 ORTHO05D004112 3.2e-21 105.1 107 58.9
Nn3g16767 Nelumbo nucifera HOM05D019617 ORTHO05D017182 2.5e-18 95.5 93 66.7
Nn1g00499 Nelumbo nucifera HOM05D003543 ORTHO05D004112 2.1e-17 92.4 95 62.1
Nn5g28912 Nelumbo nucifera HOM05D003543 ORTHO05D004112 1.2e-15 86.7 80 66.2
Actinidia26851 Actinidia chinensis HOM05D003543 ORTHO05D017182 7.6e-15 84.0 102 51.0
Nn3g17714 Nelumbo nucifera HOM05D003543 ORTHO05D004112 9.9e-15 83.6 78 64.1
THA.LOC104813330 Tarenaya hassleriana HOM05D003543 ORTHO05D004112 1.3e-14 83.2 67 68.7
BcaC01g04521 Brassica carinata HOM05D004466 ORTHO05D005007 2.9e-14 82.0 91 48.4
Os07g0587500 Oryza sativa ssp. japonica HOM05D000215 ORTHO05D005007 2.1e-12 75.9 90 48.9
Nn4g23510 Nelumbo nucifera HOM05D001760 ORTHO05D005007 4.6e-12 74.7 115 40.0
Potri.006G015100 Populus trichocarpa HOM05D003543 ORTHO05D004112 7.8e-12 73.9 66 66.7
Gohir.D03G026450 Gossypium hirsutum HOM05D001760 ORTHO05D001691 2.3e-11 72.4 114 40.4
Nn4g22552 Nelumbo nucifera HOM05D003543 ORTHO05D034927 5.1e-11 71.2 50 82.0
Zm00001eb085470 Zea mays HOM05D002753 ORTHO05D015449 5.1e-11 71.2 92 45.7
Zm00001eb326060 Zea mays HOM05D000215 ORTHO05D005007 5.1e-11 71.2 83 45.8
CDE05G3523 Ceratophyllum demersum HOM05D003543 ORTHO05D004112 1.1e-10 70.1 80 55.0
MELO3C000051.2 Cucumis melo HOM05D003543 ORTHO05D004112 4.3e-10 68.2 52 73.1
Hund23399 Selenicereus undatus HOM05D003543 ORTHO05D004112 7.3e-10 67.4 85 50.6
Glyma.06G045900 Glycine max HOM05D004466 ORTHO05D005007 9.6e-10 67.0 87 42.5
ECA234G1693 Erigeron canadensis HOM05D003543 ORTHO05D004112 1.3e-09 66.6 94 50.0
HanXRQChr17g0559481 Helianthus annuus HOM05D003543 ORTHO05D004112 1.3e-09 66.6 89 49.4
arahy.Tifrunner.gnm1.ann1.5SF4Q5 Arachis hypogaea HOM05D004466 ORTHO05D005007 6.2e-09 64.3 91 41.8
vmacro05227 Vaccinium macrocarpon HOM05D001760 ORTHO05D001691 6.2e-09 64.3 77 49.4
TWI12G1356 Tripterygium wilfordii HOM05D004466 ORTHO05D005007 8.1e-09 63.9 77 46.8
DCAR_015275 Daucus carota HOM05D001760 ORTHO05D001691 1.4e-08 63.2 64 51.6
Pp3c13_7510 Physcomitrium patens HOM05D006865 ORTHO05D004758 2.4e-08 62.4 96 36.5
Pp3c17_14150 Physcomitrium patens HOM05D000577 ORTHO05D003389 3.1e-08 62.0 96 42.7
AUR62038395 Chenopodium quinoa HOM05D000154 ORTHO05D000092 5.3e-08 61.2 90 42.2
ATR0165G061 Amborella trichopoda HOM05D001760 ORTHO05D001691 6.9e-08 60.8 92 41.3
Gorai.003G028100 Gossypium raimondii HOM05D001760 ORTHO05D001691 6.9e-08 60.8 87 42.5
Dinv26889 Davidia involucrata HOM05D001760 ORTHO05D001691 1.2e-07 60.1 154 31.2
HanXRQChr16g0517001 Helianthus annuus HOM05D003543 ORTHO05D004112 1.2e-07 60.1 94 45.7
MELO3C024097.2 Cucumis melo HOM05D000318 ORTHO05D004112 1.5e-07 59.7 46 73.9
Duzib187G1688 Durio zibethinus HOM05D001760 ORTHO05D001691 1.5e-07 59.7 63 50.8
Lsat_1_v5_gn_4_162241 Lactuca sativa HOM05D001760 ORTHO05D001691 2.0e-07 59.3 63 50.8
Lj7C86G4 Lonicera japonica HOM05D001760 ORTHO05D001691 2.0e-07 59.3 63 50.8
Os03g0435300 Oryza sativa ssp. japonica HOM05D000215 ORTHO05D005007 2.0e-07 59.3 99 41.4
CAN.G7501.1 Capsicum annuum HOM05D001760 ORTHO05D001691 2.6e-07 58.9 152 31.6
Cc07_g06640 Coffea canephora HOM05D001760 ORTHO05D001691 2.6e-07 58.9 63 50.8
MELO3C034797.2 Cucumis melo HOM05D003543 ORTHO05D004112 2.6e-07 58.9 52 63.5
Duzib264G0410 Durio zibethinus HOM05D001760 ORTHO05D001691 3.4e-07 58.5 63 49.2
MBI16_g42305_MAGBIO Magnolia biondii HOM05D003543 ORTHO05D004112 3.4e-07 58.5 70 55.7
CANSAT01G1330 Cannabis sativa HOM05D001760 ORTHO05D001691 4.5e-07 58.2 63 49.2
Pp3c4_28800 Physcomitrium patens HOM05D006865 ORTHO05D009005 4.5e-07 58.2 96 35.4
MSTRG.1787 Avicennia marina HOM05D001760 ORTHO05D001691 5.8e-07 57.8 90 41.1
Cpa.g.sc6.66 Carica papaya HOM05D001760 ORTHO05D001691 5.8e-07 57.8 63 47.6
Gohir.D11G205000 Gossypium hirsutum HOM05D001760 ORTHO05D001691 5.8e-07 57.8 92 40.2
Gorai.007G219900 Gossypium raimondii HOM05D001760 ORTHO05D001691 5.8e-07 57.8 92 40.2
Potri.007G051000 Populus trichocarpa HOM05D001760 ORTHO05D001691 5.8e-07 57.8 63 49.2
Rhsim08G0096400 Rhododendron simsii HOM05D001760 ORTHO05D001691 5.8e-07 57.8 63 49.2
COL.COLO4_11514 Corchorus olitorius HOM05D001760 ORTHO05D001691 7.6e-07 57.4 63 49.2
SGA_v2.0_scaffold89G27513 Striga asiatica HOM05D003543 ORTHO05D004112 7.6e-07 57.4 59 55.9
FAN28G2089 Fragaria x ananassa HOM05D001760 ORTHO05D001691 9.9e-07 57.0 63 47.6
Gohir.A11G218700 Gossypium hirsutum HOM05D001760 ORTHO05D001691 9.9e-07 57.0 91 40.7
Prupe.6G225600 Prunus persica HOM05D001760 ORTHO05D001691 9.9e-07 57.0 63 47.6
ATR0174G028 Amborella trichopoda HOM05D000215 ORTHO05D008904 1.3e-06 56.6 86 36.0
CDE01G0383 Ceratophyllum demersum HOM05D001760 ORTHO05D001691 1.3e-06 56.6 63 46.0
Pp3c26_12730 Physcomitrium patens HOM05D006865 ORTHO05D009005 1.3e-06 56.6 96 33.3
Rhsim06G0062200 Rhododendron simsii HOM05D004466 ORTHO05D005007 1.3e-06 56.6 73 42.5
SHI32533 Sapria himalayana HOM05D000002 ORTHO05D000001 1.3e-06 56.6 87 39.1
Dinv39225 Davidia involucrata HOM05D004466 ORTHO05D005007 1.7e-06 56.2 62 51.6
Gohir.A02G153900 Gossypium hirsutum HOM05D001760 ORTHO05D001691 1.7e-06 56.2 63 49.2
Potri.005G144700 Populus trichocarpa HOM05D001760 ORTHO05D001691 1.7e-06 56.2 63 47.6
Sabra05G0114600 Salix brachista HOM05D001760 ORTHO05D001691 1.7e-06 56.2 63 47.6
Sabra05G0115500 Salix brachista HOM05D001760 ORTHO05D001691 1.7e-06 56.2 63 47.6
CSS0032810 Camellia sinensis var. sinensis HOM05D004466 ORTHO05D005007 2.2e-06 55.8 66 48.5
CAN.G442.7 Capsicum annuum HOM05D001760 ORTHO05D001691 2.2e-06 55.8 91 40.7
MELO3C020869.2 Cucumis melo HOM05D000261 ORTHO05D002902 2.2e-06 55.8 63 47.6
CsaV3_2G016590 Cucumis sativus L. HOM05D001760 ORTHO05D001691 2.2e-06 55.8 63 47.6
Glyma.14G202000 Glycine max HOM05D001760 ORTHO05D001691 2.2e-06 55.8 87 39.1
Os08g0110500 Oryza sativa ssp. japonica HOM05D001760 ORTHO05D001691 2.2e-06 55.8 91 39.6
Hund25681 Selenicereus undatus HOM05D001760 ORTHO05D001691 2.2e-06 55.8 63 47.6
CiPaw.01G008600 Carya illinoinensis HOM05D001760 ORTHO05D001691 2.9e-06 55.5 63 47.6
Rhsim08G0096500 Rhododendron simsii HOM05D001760 ORTHO05D001691 2.9e-06 55.5 55 56.4
TWI73G0164 Tripterygium wilfordii HOM05D001760 ORTHO05D001691 2.9e-06 55.5 64 48.4
Actinidia07395 Actinidia chinensis HOM05D001760 ORTHO05D001691 3.8e-06 55.1 63 47.6
MSTRG.20165 Avicennia marina HOM05D000271 ORTHO05D004758 3.8e-06 55.1 101 35.6
PGR004G0267 Punica granatum HOM05D001760 ORTHO05D001691 3.8e-06 55.1 64 45.3
Aqoxy1G01481 Aquilegia oxysepala HOM05D001760 ORTHO05D001691 4.9e-06 54.7 62 46.8
arahy.Tifrunner.gnm1.ann1.R1NTZK Arachis hypogaea HOM05D001865 ORTHO05D001815 4.9e-06 54.7 91 40.7
BcaC07g41004 Brassica carinata HOM05D001760 ORTHO05D001691 4.9e-06 54.7 91 39.6
PSO541G4419 Papaver somniferum HOM05D001760 ORTHO05D001691 4.9e-06 54.7 63 44.4
TAR629G3525 Trochodendron aralioides HOM05D003543 ORTHO05D004112 4.9e-06 54.7 44 72.7
VMungo0647G1663 Vigna mungo HOM05D001760 ORTHO05D001691 4.9e-06 54.7 63 46.0
Ca_15025_v3 Cicer arietinum L. HOM05D001760 ORTHO05D001691 6.4e-06 54.3 63 47.6
Gohir.D07G219700 Gossypium hirsutum HOM05D001760 ORTHO05D001691 6.4e-06 54.3 65 43.1
Gorai.007G146800 Gossypium raimondii HOM05D001760 ORTHO05D001691 6.4e-06 54.3 63 47.6
Lj4C158T3 Lonicera japonica HOM05D001760 ORTHO05D001691 6.4e-06 54.3 64 45.3
Manes.12G109600 Manihot esculenta HOM05D001760 ORTHO05D001691 6.4e-06 54.3 63 47.6
Pp3c20_16680 Physcomitrium patens HOM05D000215 ORTHO05D008904 6.4e-06 54.3 87 37.9
THA.LOC104807616 Tarenaya hassleriana HOM05D001760 ORTHO05D001691 6.4e-06 54.3 63 46.0
EL10Ac2g02554 Beta vulgaris HOM05D001760 ORTHO05D001691 8.4e-06 53.9 91 39.6
Cfa004085 Carpinus fangiana HOM05D001760 ORTHO05D001691 8.4e-06 53.9 63 46.0
Haze_15329 Corylus avellana HOM05D001760 ORTHO05D001691 8.4e-06 53.9 63 46.0
MELO3C018383.2 Cucumis melo HOM05D019617 ORTHO05D017182 8.4e-06 53.9 44 56.8
Oeu023079.1 Olea europaea HOM05D001760 ORTHO05D001691 8.4e-06 53.9 63 46.0
Thecc.01G066800 Theobroma cacao HOM05D001760 ORTHO05D001691 8.4e-06 53.9 60 48.3
TWI09G0363 Tripterygium wilfordii HOM05D001760 ORTHO05D001691 8.4e-06 53.9 63 47.6
Zm00001eb174100 Zea mays HOM05D001760 ORTHO05D001691 8.4e-06 53.9 91 38.5
Zm00001eb260470 Zea mays HOM05D001760 ORTHO05D001691 8.4e-06 53.9 91 38.5


User provided reference genes

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