Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00804 Nelumbo nucifera HOM05D001914 ORTHO05D273667 1.6e-39 165.6 82 100.0
Nn1g00801 Nelumbo nucifera HOM05D001914 ORTHO05D001983 1.7e-30 135.6 69 94.2
Nn1g00797 Nelumbo nucifera HOM05D001914 ORTHO05D001983 9.0e-27 123.2 59 94.9
Nn1g00802 Nelumbo nucifera HOM05D001914 ORTHO05D001983 1.3e-25 119.4 59 91.5
Nn7g38112 Nelumbo nucifera HOM05D001914 ORTHO05D001983 2.9e-25 118.2 59 89.8
Nn7g38283 Nelumbo nucifera HOM05D001914 ORTHO05D001983 2.9e-25 118.2 59 89.8
Nn1g00800 Nelumbo nucifera HOM05D001914 ORTHO05D001983 6.4e-25 117.1 59 89.8
Nn7g36648 Nelumbo nucifera HOM05D001914 ORTHO05D001983 1.1e-24 116.3 59 88.1
Nn7g38281 Nelumbo nucifera HOM05D001914 ORTHO05D001983 1.2e-23 112.8 59 84.7
Nn1g00798 Nelumbo nucifera HOM05D001914 ORTHO05D001983 2.5e-21 105.1 52 92.3
Nn7g38111 Nelumbo nucifera HOM05D001914 ORTHO05D001983 5.6e-21 104.0 55 85.5
HPP92_003917 Vanilla planifolia HOM05D001914 ORTHO05D001983 4.8e-12 74.3 57 61.4
Eucgr.D00432 Eucalyptus grandis HOM05D001914 ORTHO05D001983 6.9e-11 70.5 57 57.9
DCAR_021042 Daucus carota HOM05D001914 ORTHO05D001983 1.2e-10 69.7 59 57.6
Hma1.2p1_0519F.1_g171360 Hydrangea macrophylla HOM05D001914 ORTHO05D001983 2.0e-10 68.9 57 56.1
AL1G29190 Arabidopsis lyrata HOM05D001914 ORTHO05D001983 4.5e-10 67.8 57 52.6
FvH4_3g07210 Fragaria vesca HOM05D001914 ORTHO05D001983 4.5e-10 67.8 60 58.3
vmacro11977 Vaccinium macrocarpon HOM05D001914 ORTHO05D001983 4.5e-10 67.8 59 57.6
RcHm_v2.0_Chr5g0011941 Rosa chinensis HOM05D001914 ORTHO05D001983 5.8e-10 67.4 57 59.6
Carub.0001s1675 Capsella rubella HOM05D001914 ORTHO05D001983 1.0e-09 66.6 57 52.6
CiPaw.09G136700 Carya illinoinensis HOM05D001914 ORTHO05D001983 1.0e-09 66.6 57 59.6
vmacro03999 Vaccinium macrocarpon HOM05D001914 ORTHO05D001983 1.0e-09 66.6 69 50.7
Os05g0272200 Oryza sativa ssp. japonica HOM05D001914 ORTHO05D001983 1.3e-09 66.2 59 57.6
FvH4_3g07190 Fragaria vesca HOM05D001914 ORTHO05D001983 1.7e-09 65.9 57 57.9
FAN11G0502 Fragaria x ananassa HOM05D001914 ORTHO05D001983 1.7e-09 65.9 57 57.9
FAN16G2403 Fragaria x ananassa HOM05D001914 ORTHO05D001983 1.7e-09 65.9 57 57.9
FAN25G3377 Fragaria x ananassa HOM05D001914 ORTHO05D001983 1.7e-09 65.9 57 57.9
Nitab4.5_0001778g0040 Nicotiana tabacum HOM05D001914 ORTHO05D001983 2.2e-09 65.5 57 59.6
Nitab4.5_0008128g0030 Nicotiana tabacum HOM05D001914 ORTHO05D001983 2.2e-09 65.5 57 59.6
Sabra04G0041100 Salix brachista HOM05D001914 ORTHO05D001983 2.2e-09 65.5 57 59.6
AT1G17030 Arabidopsis thaliana HOM05D001914 ORTHO05D001983 2.9e-09 65.1 57 50.9
CSS0018667 Camellia sinensis var. sinensis HOM05D001914 ORTHO05D001983 2.9e-09 65.1 57 59.6
CSS0044351 Camellia sinensis var. sinensis HOM05D001914 ORTHO05D001983 2.9e-09 65.1 57 59.6
CARHR017560 Cardamine hirsuta HOM05D001914 ORTHO05D001983 2.9e-09 65.1 57 50.9
Thhalv10007403m.g Eutrema salsugineum HOM05D001914 ORTHO05D001983 2.9e-09 65.1 57 52.6
Peaxi162Scf01009g00225 Petunia axillaris HOM05D001914 ORTHO05D001983 2.9e-09 65.1 59 57.6
PGR031G2652 Punica granatum HOM05D001914 ORTHO05D001983 2.9e-09 65.1 57 57.9
QL05p050205 Quercus lobata HOM05D001914 ORTHO05D001983 2.9e-09 65.1 57 56.1
TWI09G0314 Tripterygium wilfordii HOM05D001914 ORTHO05D001983 2.9e-09 65.1 57 57.9
BcaB02g06655 Brassica carinata HOM05D001914 ORTHO05D001983 3.8e-09 64.7 57 50.9
A06p12920 Brassica napus HOM05D001914 ORTHO05D001983 3.8e-09 64.7 57 50.9
C05p15350 Brassica napus HOM05D001914 ORTHO05D001983 3.8e-09 64.7 57 50.9
BolC5t30241H Brassica oleracea HOM05D001914 ORTHO05D001983 3.8e-09 64.7 57 50.9
BraA06t24452Z Brassica rapa HOM05D001914 ORTHO05D001983 3.8e-09 64.7 57 50.9
Aqoxy1G01992 Aquilegia oxysepala HOM05D001914 ORTHO05D001983 5.0e-09 64.3 57 57.9
GSVIVG01021266001 Vitis vinifera HOM05D001914 ORTHO05D001983 5.0e-09 64.3 57 57.9
CAN.G1569.2 Capsicum annuum HOM05D001914 ORTHO05D001983 6.5e-09 63.9 57 57.9
Cc05_g10600 Coffea canephora HOM05D001914 ORTHO05D001983 6.5e-09 63.9 57 56.1
Medtr2g072850 Medicago truncatula HOM05D001914 ORTHO05D001983 6.5e-09 63.9 59 55.9
Prupe.4G067900 Prunus persica HOM05D001914 ORTHO05D001983 6.5e-09 63.9 57 57.9
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 6.5e-09 63.9 66 53.0
Aa31LG7G1860 Aethionema arabicum HOM05D001914 ORTHO05D001983 8.4e-09 63.5 57 49.1
COL.COLO4_31218 Corchorus olitorius HOM05D001914 ORTHO05D001983 8.4e-09 63.5 57 56.1
Dinv26699 Davidia involucrata HOM05D001914 ORTHO05D001983 8.4e-09 63.5 57 56.1
Lj1C822G14 Lonicera japonica HOM05D001914 ORTHO05D001983 8.4e-09 63.5 59 54.2
Oeu058450.1 Olea europaea HOM05D001914 ORTHO05D001983 8.4e-09 63.5 59 55.9
TAR626G0111 Trochodendron aralioides HOM05D001914 ORTHO05D001983 8.4e-09 63.5 57 56.1
Cc02_g15730 Coffea canephora HOM05D001914 ORTHO05D001983 1.1e-08 63.2 57 57.9
Sabra16G0251500 Salix brachista HOM05D001914 ORTHO05D001983 1.1e-08 63.2 59 52.5
MD00G1008000 Malus domestica HOM05D001914 ORTHO05D001983 1.4e-08 62.8 57 57.9
Manes.17G060400 Manihot esculenta HOM05D001914 ORTHO05D001983 1.4e-08 62.8 57 57.9
Solyc02g072040.3 Solanum lycopersicum HOM05D001914 ORTHO05D001983 1.4e-08 62.8 57 56.1
Solyc03g006010.3 Solanum lycopersicum HOM05D001914 ORTHO05D001983 1.4e-08 62.8 57 56.1
Sopen02g021010 Solanum pennellii HOM05D001914 ORTHO05D001983 1.4e-08 62.8 57 56.1
Sopen03g002010 Solanum pennellii HOM05D001914 ORTHO05D001983 1.4e-08 62.8 57 56.1
PGSC0003DMG400028415 Solanum tuberosum HOM05D001914 ORTHO05D001983 1.4e-08 62.8 57 56.1
Ciclev10024307m.g Citrus clementina HOM05D001914 ORTHO05D001983 1.9e-08 62.4 57 54.4
Duzib213G0910 Durio zibethinus HOM05D001914 ORTHO05D001983 1.9e-08 62.4 59 52.5
Nn6g34371 Nelumbo nucifera HOM05D001914 ORTHO05D001983 1.9e-08 62.4 57 54.4
Rhsim06G0212500 Rhododendron simsii HOM05D001914 ORTHO05D001983 1.9e-08 62.4 59 52.5
Dinv32329 Davidia involucrata HOM05D001914 ORTHO05D001983 2.5e-08 62.0 57 54.4
Eucgr.F01373 Eucalyptus grandis HOM05D001914 ORTHO05D001983 2.5e-08 62.0 59 52.5
Sp1g15150 Schrenkiella parvula HOM05D001914 ORTHO05D001983 2.5e-08 62.0 57 49.1
TPR.G27298 Trifolium pratense HOM05D001914 ORTHO05D001983 2.5e-08 62.0 59 54.2
Potri.001G381400 Populus trichocarpa HOM05D001914 ORTHO05D001983 3.2e-08 61.6 59 50.8
Potri.004G062000 Populus trichocarpa HOM05D001914 ORTHO05D001983 3.2e-08 61.6 57 54.4
Rhsim13G0187100 Rhododendron simsii HOM05D001914 ORTHO05D001983 3.2e-08 61.6 57 56.1
TAR627G1141 Trochodendron aralioides HOM05D001914 ORTHO05D001983 3.2e-08 61.6 57 54.4
Ah.11g045900 Amaranthus hybridus HOM05D001914 ORTHO05D001983 4.2e-08 61.2 62 46.8
Potri.001G381600 Populus trichocarpa HOM05D001914 ORTHO05D001983 4.2e-08 61.2 59 52.5
Thecc.06G164300 Theobroma cacao HOM05D001914 ORTHO05D001983 4.2e-08 61.2 57 54.4
Atru.chr10.1532 Acer truncatum HOM05D001914 ORTHO05D001983 5.5e-08 60.8 57 52.6
Migut.M01004 Erythranthe guttata HOM05D001914 ORTHO05D001983 5.5e-08 60.8 57 56.1
Nitab4.5_0001140g0100 Nicotiana tabacum HOM05D001914 ORTHO05D001983 5.5e-08 60.8 59 54.2
Nitab4.5_0003618g0030 Nicotiana tabacum HOM05D001914 ORTHO05D001983 5.5e-08 60.8 59 54.2
Oeu001070.1 Olea europaea HOM05D001914 ORTHO05D001983 5.5e-08 60.8 57 54.4
SalBow7G0904 Salvia bowleyana HOM05D001914 ORTHO05D001983 5.5e-08 60.8 57 56.1
Duzib235G1252 Durio zibethinus HOM05D001914 ORTHO05D001983 7.1e-08 60.5 57 54.4
QL08p024587 Quercus lobata HOM05D001914 ORTHO05D001983 7.1e-08 60.5 57 52.6
Sabra02G0130000 Salix brachista HOM05D001914 ORTHO05D001983 7.1e-08 60.5 82 43.9
CSS0030025 Camellia sinensis var. sinensis HOM05D001914 ORTHO05D001983 9.3e-08 60.1 59 52.5
CSS0043433 Camellia sinensis var. sinensis HOM05D001914 ORTHO05D001983 9.3e-08 60.1 59 52.5
CAN.G375.57 Capsicum annuum HOM05D001914 ORTHO05D001983 9.3e-08 60.1 59 54.2
Ciclev10014740m.g Citrus clementina HOM05D001914 ORTHO05D001983 9.3e-08 60.1 57 54.4
Manes.15G099700 Manihot esculenta HOM05D001914 ORTHO05D001983 9.3e-08 60.1 59 50.8
Nn3g21101 Nelumbo nucifera HOM05D001914 ORTHO05D001983 9.3e-08 60.1 57 52.6
Peaxi162Scf00112g00919 Petunia axillaris HOM05D001914 ORTHO05D001983 9.3e-08 60.1 57 54.4
Peaxi162Scf00573g00618 Petunia axillaris HOM05D001914 ORTHO05D001983 9.3e-08 60.1 62 50.0
SalBow7G1049 Salvia bowleyana HOM05D001914 ORTHO05D001983 9.3e-08 60.1 57 54.4
SalBow7G3760 Salvia bowleyana HOM05D001914 ORTHO05D001983 9.3e-08 60.1 57 54.4
Solyc02g072050.2 Solanum lycopersicum HOM05D001914 ORTHO05D001983 9.3e-08 60.1 57 54.4
Sopen02g021020 Solanum pennellii HOM05D001914 ORTHO05D001983 9.3e-08 60.1 57 54.4
CiPaw.10G103500 Carya illinoinensis HOM05D001914 ORTHO05D001983 1.2e-07 59.7 57 54.4
Potri.001G382000 Populus trichocarpa HOM05D001914 ORTHO05D001983 1.2e-07 59.7 59 50.8
TAR624G0254 Trochodendron aralioides HOM05D001914 ORTHO05D001983 1.2e-07 59.7 57 54.4
Zm00001eb064640 Zea mays HOM05D001914 ORTHO05D001983 1.2e-07 59.7 62 51.6
MSTRG.14256 Avicennia marina HOM05D001914 ORTHO05D001983 1.6e-07 59.3 59 49.2
EL10Ac8g19990 Beta vulgaris HOM05D001914 ORTHO05D001983 1.6e-07 59.3 57 50.9
Migut.J01321 Erythranthe guttata HOM05D001914 ORTHO05D001983 1.6e-07 59.3 57 50.9
SGA_v2.0_scaffold123G33476 Striga asiatica HOM05D001914 ORTHO05D001983 1.6e-07 59.3 57 56.1
Solyc07g062090.3 Solanum lycopersicum HOM05D001914 ORTHO05D001983 2.1e-07 58.9 59 52.5
Sopen07g030350 Solanum pennellii HOM05D001914 ORTHO05D001983 2.1e-07 58.9 59 52.5
PGSC0003DMG400007085 Solanum tuberosum HOM05D001914 ORTHO05D001983 2.1e-07 58.9 59 52.5
CSS0020979 Camellia sinensis var. sinensis HOM05D001914 ORTHO05D001983 2.7e-07 58.5 59 52.5
arahy.Tifrunner.gnm1.ann1.873UVH Arachis hypogaea HOM05D001914 ORTHO05D001983 3.5e-07 58.2 57 50.9
arahy.Tifrunner.gnm1.ann1.E23C16 Arachis hypogaea HOM05D001914 ORTHO05D001983 3.5e-07 58.2 57 52.6
arahy.Tifrunner.gnm1.ann1.M8PIUR Arachis hypogaea HOM05D001914 ORTHO05D001983 3.5e-07 58.2 56 55.4
arahy.Tifrunner.gnm1.ann1.WGJX0L Arachis hypogaea HOM05D001914 ORTHO05D001983 3.5e-07 58.2 56 55.4
Manes.15G099800 Manihot esculenta HOM05D001914 ORTHO05D001983 4.6e-07 57.8 59 49.2
Nitab4.5_0005428g0020 Nicotiana tabacum HOM05D001914 ORTHO05D001983 4.6e-07 57.8 55 52.7
Hund00925 Selenicereus undatus HOM05D001914 ORTHO05D001983 4.6e-07 57.8 57 50.9
ATR0568G091 Amborella trichopoda HOM05D001914 ORTHO05D001983 6.1e-07 57.4 57 49.1
arahy.Tifrunner.gnm1.ann1.BNV3MQ Arachis hypogaea HOM05D001914 ORTHO05D001983 6.1e-07 57.4 57 52.6
Eucgr.K00576 Eucalyptus grandis HOM05D001914 ORTHO05D001983 6.1e-07 57.4 57 50.9
EL10As5g23618 Beta vulgaris HOM05D001914 ORTHO05D001983 7.9e-07 57.0 62 46.8
Nn7g38198 Nelumbo nucifera HOM05D001914 ORTHO05D001983 7.9e-07 57.0 57 49.1
arahy.Tifrunner.gnm1.ann1.MKLC0K Arachis hypogaea HOM05D001914 ORTHO05D001983 1.0e-06 56.6 57 49.1
AUR62011694 Chenopodium quinoa HOM05D001914 ORTHO05D001983 1.0e-06 56.6 62 48.4
CDE02G1128 Ceratophyllum demersum HOM05D001914 ORTHO05D003011 1.3e-06 56.2 64 45.3
AUR62039489 Chenopodium quinoa HOM05D001914 ORTHO05D001983 1.3e-06 56.2 57 49.1
AUR62041811 Chenopodium quinoa HOM05D001914 ORTHO05D001983 1.3e-06 56.2 57 47.4
MD17G1284100 Malus domestica HOM05D001914 ORTHO05D001983 1.3e-06 56.2 57 52.6
Nitab4.5_0002458g0080 Nicotiana tabacum HOM05D001914 ORTHO05D001983 1.3e-06 56.2 40 65.0
Peaxi162Scf00111g10126 Petunia axillaris HOM05D001914 ORTHO05D001983 1.3e-06 56.2 57 50.9
AUR62024553 Chenopodium quinoa HOM05D001914 ORTHO05D001983 1.8e-06 55.8 62 46.8
FvH4_1g26330 Fragaria vesca HOM05D001914 ORTHO05D001983 1.8e-06 55.8 57 50.9
FAN19G1954 Fragaria x ananassa HOM05D001914 ORTHO05D001983 1.8e-06 55.8 57 50.9
FAN26G2781 Fragaria x ananassa HOM05D001914 ORTHO05D001983 1.8e-06 55.8 57 50.9
FAN28G0214 Fragaria x ananassa HOM05D001914 ORTHO05D001983 1.8e-06 55.8 57 50.9
RcHm_v2.0_Chr3g0486001 Rosa chinensis HOM05D001914 ORTHO05D001983 1.8e-06 55.8 57 50.9
Mapoly0011s0186 Marchantia polymorpha HOM05D001914 ORTHO05D001983 2.3e-06 55.5 59 54.2
Nn7g38199 Nelumbo nucifera HOM05D001914 ORTHO05D001983 2.3e-06 55.5 57 49.1
Oeu058447.1 Olea europaea HOM05D001914 ORTHO05D001983 2.3e-06 55.5 55 49.1
Cc05_g10590 Coffea canephora HOM05D001914 ORTHO05D001983 3.9e-06 54.7 57 47.4
QL12p034545 Quercus lobata HOM05D001914 ORTHO05D001983 5.1e-06 54.3 57 49.1
Haze_05371 Corylus avellana HOM05D001914 ORTHO05D001983 6.7e-06 53.9 48 54.2
SalBow2G1293 Salvia bowleyana HOM05D001914 ORTHO05D001983 6.7e-06 53.9 57 50.9
Thecc.01G324100 Theobroma cacao HOM05D001914 ORTHO05D001983 6.7e-06 53.9 57 50.9
Aqoxy5G02809 Aquilegia oxysepala HOM05D001914 ORTHO05D001983 8.7e-06 53.5 57 49.1
MSTRG.15095 Avicennia marina HOM05D001914 ORTHO05D001983 8.7e-06 53.5 57 49.1
Eucgr.A01013 Eucalyptus grandis HOM05D001914 ORTHO05D001983 8.7e-06 53.5 57 49.1
FAN08G2914 Fragaria x ananassa HOM05D001914 ORTHO05D001983 8.7e-06 53.5 62 46.8
FAN18G2682 Fragaria x ananassa HOM05D001914 ORTHO05D001983 8.7e-06 53.5 62 46.8
PGR042G1868 Punica granatum HOM05D001914 ORTHO05D001983 8.7e-06 53.5 57 50.9
SEGI_33994 Sequoiadendron giganteum HOM05D001914 ORTHO05D001983 8.7e-06 53.5 59 50.8


User provided reference genes

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