Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nn1g00803 Nelumbo nucifera HOM05D003578 ORTHO05D004021 1.1e-118 429.9 204 100.0
Nn1g08568 Nelumbo nucifera HOM05D003578 ORTHO05D004021 3.1e-60 235.7 226 58.4
Nn1g00799 Nelumbo nucifera HOM05D003578 ORTHO05D004021 6.5e-50 201.4 213 57.7
vmacro01788 Vaccinium macrocarpon HOM05D003578 ORTHO05D004021 3.9e-31 139.0 218 44.0
Aqoxy7G03367 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 2.0e-30 136.7 196 42.9
Dinv19347 Davidia involucrata HOM05D003578 ORTHO05D004021 2.6e-30 136.3 212 42.5
Rhsim11G0132000 Rhododendron simsii HOM05D003578 ORTHO05D004021 5.7e-30 135.2 215 43.3
CSS0048877 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 4.8e-29 132.1 186 44.6
CSS0023378 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 6.3e-29 131.7 129 51.2
PSO017G3053 Papaver somniferum HOM05D003578 ORTHO05D004021 6.9e-28 128.3 148 46.6
Aqoxy2G04052 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 9.1e-28 127.9 105 58.1
PSO478G2549 Papaver somniferum HOM05D003578 ORTHO05D004021 2.6e-27 126.3 148 45.3
Lj1C1063G12 Lonicera japonica HOM05D003578 ORTHO05D004021 7.7e-27 124.8 205 40.5
PSO266G0076 Papaver somniferum HOM05D003578 ORTHO05D004021 2.9e-26 122.9 135 48.1
CSS0005813 Camellia sinensis var. sinensis HOM05D003578 ORTHO05D004021 8.5e-26 121.3 231 39.4
CiPaw.06G150300 Carya illinoinensis HOM05D003578 ORTHO05D004021 1.9e-25 120.2 221 37.6
PSO478G5278 Papaver somniferum HOM05D003578 ORTHO05D004021 2.5e-25 119.8 135 47.4
CiPaw.05G040600 Carya illinoinensis HOM05D003578 ORTHO05D004021 5.5e-25 118.6 224 36.6
Cfa005568 Carpinus fangiana HOM05D003578 ORTHO05D004021 9.4e-25 117.9 116 48.3
Prupe.1G564000 Prunus persica HOM05D003578 ORTHO05D004021 9.4e-25 117.9 203 41.9
Actinidia39059 Actinidia chinensis HOM05D003578 ORTHO05D004021 1.2e-24 117.5 230 37.0
arahy.Tifrunner.gnm1.ann1.FVSM65 Arachis hypogaea HOM05D003578 ORTHO05D004021 1.2e-24 117.5 230 37.8
Haze_10786 Corylus avellana HOM05D003578 ORTHO05D004021 1.6e-24 117.1 116 48.3
Lalb_Chr20g0123381 Lupinus albus HOM05D003578 ORTHO05D004021 2.1e-24 116.7 216 38.9
Medtr2g028550 Medicago truncatula HOM05D003578 ORTHO05D004021 3.6e-24 115.9 221 35.7
Manes.07G012900 Manihot esculenta HOM05D003578 ORTHO05D004021 4.7e-24 115.5 129 46.5
TWI23G0776 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 4.7e-24 115.5 130 47.7
SGA_v2.0_scaffold110G31277 Striga asiatica HOM05D003578 ORTHO05D004021 7.9e-24 114.8 219 37.0
Phvul.006G211900 Phaseolus vulgaris HOM05D003578 ORTHO05D004021 1.0e-23 114.4 125 46.4
TWI14G0091 Tripterygium wilfordii HOM05D003578 ORTHO05D004021 1.0e-23 114.4 150 43.3
arahy.Tifrunner.gnm1.ann1.CJK4SJ Arachis hypogaea HOM05D003578 ORTHO05D004021 1.8e-23 113.6 130 46.2
Eucgr.G00633 Eucalyptus grandis HOM05D003578 ORTHO05D004021 1.8e-23 113.6 154 40.3
arahy.Tifrunner.gnm1.ann1.0E6AR9 Arachis hypogaea HOM05D003578 ORTHO05D004021 3.0e-23 112.8 130 46.2
arahy.Tifrunner.gnm1.ann1.H2X3VG Arachis hypogaea HOM05D003578 ORTHO05D004021 3.0e-23 112.8 130 46.2
arahy.Tifrunner.gnm1.ann1.MNPV6T Arachis hypogaea HOM05D003578 ORTHO05D004021 3.0e-23 112.8 130 46.2
CDE10G0634 Ceratophyllum demersum HOM05D003578 ORTHO05D004021 3.0e-23 112.8 227 36.6
Hund15694 Selenicereus undatus HOM05D003578 ORTHO05D004021 3.0e-23 112.8 228 36.0
CANSAT11G1197 Cannabis sativa HOM05D003578 ORTHO05D004021 5.2e-23 112.1 234 35.5
Lsat_1_v5_gn_9_116440 Lactuca sativa HOM05D003578 ORTHO05D004021 5.2e-23 112.1 109 48.6
VMungo0540G1591 Vigna mungo HOM05D003578 ORTHO05D004021 5.2e-23 112.1 134 44.0
Ca_00092_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 2.0e-22 110.2 152 39.5
Ca_29931_v3 Cicer arietinum L. HOM05D003578 ORTHO05D004021 2.0e-22 110.2 152 39.5
Sc20g0004020 Simmondsia chinensis HOM05D003578 ORTHO05D004021 2.0e-22 110.2 164 40.2
Cc02_g22230 Coffea canephora HOM05D003578 ORTHO05D004021 2.6e-22 109.8 149 42.3
PGR042G1741 Punica granatum HOM05D003578 ORTHO05D004021 5.7e-22 108.6 128 40.6
MSTRG.16537 Avicennia marina HOM05D003578 ORTHO05D004021 7.4e-22 108.2 213 36.2
RcHm_v2.0_Chr5g0046031 Rosa chinensis HOM05D003578 ORTHO05D004021 7.4e-22 108.2 205 37.1
MD15G1419200 Malus domestica HOM05D003578 ORTHO05D004021 9.7e-22 107.8 115 47.0
Lj6g0021493 Lotus japonicus HOM05D003578 ORTHO05D004021 1.3e-21 107.5 137 43.8
Potri.001G208700 Populus trichocarpa HOM05D003578 ORTHO05D004021 1.7e-21 107.1 109 46.8
MD08G1226900 Malus domestica HOM05D003578 ORTHO05D004021 2.2e-21 106.7 115 47.0
Lj1g0024840 Lotus japonicus HOM05D003578 ORTHO05D004021 2.8e-21 106.3 137 43.1
Oeu000197.1 Olea europaea HOM05D003578 ORTHO05D004021 2.8e-21 106.3 212 37.3
Glyma.15G048000 Glycine max HOM05D003578 ORTHO05D004021 3.7e-21 105.9 142 41.5
HanXRQChr03g0066191 Helianthus annuus HOM05D003578 ORTHO05D004021 4.8e-21 105.5 184 37.5
SGA_v2.0_scaffold1G00330 Striga asiatica HOM05D003578 ORTHO05D004021 4.8e-21 105.5 109 47.7
Gohir.A03G210700 Gossypium hirsutum HOM05D003578 ORTHO05D004021 6.3e-21 105.1 126 43.7
Gohir.D02G232300 Gossypium hirsutum HOM05D003578 ORTHO05D004021 6.3e-21 105.1 126 43.7
Gorai.005G260100 Gossypium raimondii HOM05D003578 ORTHO05D004021 6.3e-21 105.1 126 43.7
Duzib132G0407 Durio zibethinus HOM05D003578 ORTHO05D004021 8.2e-21 104.8 100 47.0
Aqoxy2G02352 Aquilegia oxysepala HOM05D003578 ORTHO05D004021 1.1e-20 104.4 118 44.9
Migut.B00662 Erythranthe guttata HOM05D003578 ORTHO05D004021 1.1e-20 104.4 108 48.1
Gorai.002G207800 Gossypium raimondii HOM05D003578 ORTHO05D004021 1.4e-20 104.0 105 44.8
Sabra01G0161000 Salix brachista HOM05D003578 ORTHO05D004021 1.4e-20 104.0 109 45.0
Atru.chr6.1000 Acer truncatum HOM05D003578 ORTHO05D004021 2.4e-20 103.2 138 40.6
THA.LOC104824162 Tarenaya hassleriana HOM05D003578 ORTHO05D004021 2.4e-20 103.2 134 41.0
HPP92_025499 Vanilla planifolia HOM05D003578 ORTHO05D004021 3.1e-20 102.8 179 38.0
CAN.G1352.14 Capsicum annuum HOM05D003578 ORTHO05D004021 4.1e-20 102.4 146 41.1
SHI16565 Sapria himalayana HOM05D003578 ORTHO05D004021 4.1e-20 102.4 198 33.8
Sopen01g047080 Solanum pennellii HOM05D003578 ORTHO05D004021 4.1e-20 102.4 134 42.5
AUR62033619 Chenopodium quinoa HOM05D003578 ORTHO05D004021 5.3e-20 102.1 135 43.0
MELO3C006920.2 Cucumis melo HOM05D003578 ORTHO05D004021 7.0e-20 101.7 129 42.6
Gohir.A01G176500 Gossypium hirsutum HOM05D003578 ORTHO05D004021 7.0e-20 101.7 128 39.8
MBI06_g22317_MAGBIO Magnolia biondii HOM05D003578 ORTHO05D004021 7.0e-20 101.7 194 36.6
Thecc.02G041600 Theobroma cacao HOM05D003578 ORTHO05D004021 7.0e-20 101.7 182 37.9
Nitab4.5_0003071g0040 Nicotiana tabacum HOM05D003578 ORTHO05D004021 9.1e-20 101.3 108 47.2
Nitab4.5_0009907g0020 Nicotiana tabacum HOM05D003578 ORTHO05D004021 9.1e-20 101.3 108 47.2
AUR62038607 Chenopodium quinoa HOM05D003578 ORTHO05D004021 1.6e-19 100.5 135 42.2
CsaV3_3G018800 Cucumis sativus L. HOM05D003578 ORTHO05D004021 1.6e-19 100.5 129 42.6
TPR.G17513 Trifolium pratense HOM05D003578 ORTHO05D004021 1.6e-19 100.5 222 31.1
Solyc01g104570.4 Solanum lycopersicum HOM05D003578 ORTHO05D004021 2.0e-19 100.1 108 48.1
FvH4_5g35831 Fragaria vesca HOM05D003578 ORTHO05D004021 3.5e-19 99.4 120 45.0
FAN13G2947 Fragaria x ananassa HOM05D003578 ORTHO05D004021 3.5e-19 99.4 120 45.0
FAN18G4487 Fragaria x ananassa HOM05D003578 ORTHO05D004021 3.5e-19 99.4 203 36.9
PGSC0003DMG400029761 Solanum tuberosum HOM05D003578 ORTHO05D004021 3.5e-19 99.4 133 42.9
Cpa.g.sc2.28 Carica papaya HOM05D003578 ORTHO05D004021 4.5e-19 99.0 209 33.0
FAN08G2591 Fragaria x ananassa HOM05D003578 ORTHO05D004021 4.5e-19 99.0 199 36.7
Ciclev10007743m.g Citrus clementina HOM05D003578 ORTHO05D004021 5.9e-19 98.6 198 34.3
Aa31LG8G7140 Aethionema arabicum HOM05D003578 ORTHO05D004021 7.7e-19 98.2 203 33.5
FAN04G0507 Fragaria x ananassa HOM05D003578 ORTHO05D004021 7.7e-19 98.2 120 44.2
GSVIVG01023069001 Vitis vinifera HOM05D003578 ORTHO05D004021 7.7e-19 98.2 202 36.6
GSVIVG01023023001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.0e-18 97.8 207 36.2
GSVIVG01013912001 Vitis vinifera HOM05D003578 ORTHO05D004021 1.3e-18 97.4 208 36.5
AL5G35710 Arabidopsis lyrata HOM05D003578 ORTHO05D004021 1.7e-18 97.1 177 36.2
ClCG05G009820 Citrullus lanatus HOM05D003578 ORTHO05D004021 1.7e-18 97.1 109 45.0
AT3G54630 Arabidopsis thaliana HOM05D003578 ORTHO05D004021 3.8e-18 95.9 203 36.0
Ah.10g033260 Amaranthus hybridus HOM05D003578 ORTHO05D004021 5.0e-18 95.5 204 32.8
arahy.Tifrunner.gnm1.ann1.V2489D Arachis hypogaea HOM05D003578 ORTHO05D004021 6.5e-18 95.1 130 43.1
EL10Ac2g02673 Beta vulgaris HOM05D003578 ORTHO05D004021 1.1e-17 94.4 115 44.3
HanXRQChr03g0066541 Helianthus annuus HOM05D003578 ORTHO05D004021 1.1e-17 94.4 213 33.3
Thhalv10010243m.g Eutrema salsugineum HOM05D003578 ORTHO05D004021 1.9e-17 93.6 182 34.6
unitig_8.g4524 Utricularia gibba HOM05D003578 ORTHO05D004021 1.9e-17 93.6 157 36.9
ECA238G3381 Erigeron canadensis HOM05D003578 ORTHO05D004021 2.5e-17 93.2 199 33.2
QL11p018835 Quercus lobata HOM05D003578 ORTHO05D004021 3.2e-17 92.8 205 34.6
Oeu026056.1 Olea europaea HOM05D003578 ORTHO05D004021 7.2e-17 91.7 178 39.3
Lsat_1_v5_gn_9_118160 Lactuca sativa HOM05D003578 ORTHO05D004021 1.6e-16 90.5 71 53.5
Psat1g170680 Pisum sativum HOM05D003578 ORTHO05D004021 1.6e-16 90.5 118 44.1
Sed0026866 Sechium edule HOM05D003578 ORTHO05D004021 1.6e-16 90.5 109 43.1
DCAR_029239 Daucus carota HOM05D003578 ORTHO05D004021 3.6e-16 89.4 112 40.2
Peaxi162Scf00011g01125 Petunia axillaris HOM05D003578 ORTHO05D004021 4.7e-16 89.0 109 42.2
Carub.0005s2123 Capsella rubella HOM05D003578 ORTHO05D004021 1.0e-15 87.8 121 41.3
Psat1g170240 Pisum sativum HOM05D003578 ORTHO05D004021 1.4e-15 87.4 118 41.5
Sp5g07820 Schrenkiella parvula HOM05D003578 ORTHO05D004021 1.8e-15 87.0 204 31.9
Aa31LG2G6060 Aethionema arabicum HOM05D003578 ORTHO05D004021 2.3e-15 86.7 211 32.2
ATR0193G049 Amborella trichopoda HOM05D003578 ORTHO05D004021 1.2e-14 84.3 109 42.2
BcaB02g07728 Brassica carinata HOM05D003578 ORTHO05D004021 9.7e-14 81.3 205 30.2
BolC6t37412H Brassica oleracea HOM05D003578 ORTHO05D004021 9.7e-14 81.3 175 31.4
Os08g0468400 Oryza sativa ssp. japonica HOM05D003578 ORTHO05D004021 1.3e-13 80.9 188 35.1
SEGI_09452 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 2.2e-13 80.1 110 39.1
Eucgr.G00629 Eucalyptus grandis HOM05D003578 ORTHO05D004021 8.2e-13 78.2 202 33.2
Lsat_1_v5_gn_4_72880 Lactuca sativa HOM05D003578 ORTHO05D004021 3.1e-12 76.3 100 37.0
BcaC07g39801 Brassica carinata HOM05D003578 ORTHO05D004021 5.3e-12 75.5 175 30.9
C08p29780 Brassica napus HOM05D003578 ORTHO05D004021 5.3e-12 75.5 175 30.9
BolC8t50589H Brassica oleracea HOM05D003578 ORTHO05D004021 5.3e-12 75.5 176 32.4
A09p47580 Brassica napus HOM05D003578 ORTHO05D004021 9.1e-12 74.7 175 31.4
CARHR164540 Cardamine hirsuta HOM05D003578 ORTHO05D004021 9.1e-12 74.7 121 34.7
Cre02.g098300 Chlamydomonas reinhardtii HOM05D003578 ORTHO05D004021 9.1e-12 74.7 184 29.9
BraA09t40214Z Brassica rapa HOM05D003578 ORTHO05D004021 1.6e-11 73.9 175 31.4
arahy.Tifrunner.gnm1.ann1.3K20HM Arachis hypogaea HOM05D003578 ORTHO05D004021 2.7e-11 73.2 93 45.2
MCO01G050 Micromonas commoda HOM05D003578 ORTHO05D004021 2.7e-11 73.2 122 35.2
Pp3c7_8870 Physcomitrium patens HOM05D003578 ORTHO05D004021 5.9e-11 72.0 106 37.7
Zm00001eb040130 Zea mays HOM05D003578 ORTHO05D004021 5.9e-11 72.0 123 35.8
SEGI_11795 Sequoiadendron giganteum HOM05D003578 ORTHO05D004021 2.9e-10 69.7 111 34.2
PRCOL_00003819 Prasinoderma coloniale HOM05D003578 ORTHO05D004021 3.8e-10 69.3 136 33.1
BcaB01g00173 Brassica carinata HOM05D003578 ORTHO05D004021 5.0e-10 68.9 168 29.8
Mapoly0042s0088 Marchantia polymorpha HOM05D003578 ORTHO05D004021 1.5e-09 67.4 140 33.6
Actinidia00223 Actinidia chinensis HOM05D003578 ORTHO05D004021 2.5e-09 66.6 230 30.4
COL.COLO4_33122 Corchorus olitorius HOM05D003578 ORTHO05D004021 1.6e-08 63.9 55 54.5
arahy.Tifrunner.gnm1.ann1.ZN95YA Arachis hypogaea HOM05D003578 ORTHO05D004021 2.7e-08 63.2 71 43.7
BcaC08g44691 Brassica carinata HOM05D003578 ORTHO05D004021 2.7e-08 63.2 170 31.8
SMO254G0006 Selaginella moellendorffii HOM05D003578 ORTHO05D004021 2.7e-08 63.2 66 47.0
Pp3c11_11580 Physcomitrium patens HOM05D003578 ORTHO05D004021 6.8e-07 58.5 105 34.3
CBR_g55876 Chara braunii HOM05D003578 ORTHO05D004021 4.4e-06 55.8 95 33.7


User provided reference genes

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